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RPS11
HPA
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  • RPS11
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2483.2 nTPM
HPA:1569.2 nTPM
GTEx:2483.2 nTPM
FANTOM5:269.9 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA049719
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1569.2
overview
Male, age 65
Small intestine sample 232
nTPM: 1904.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1563.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1436.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1372.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2483.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 2483.2
Samples: 207

Max nTPM: 5540.7
Min nTPM: 1193.7
Std nTPM: 799.6
Median nTPM: 2285.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 5540.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 4841.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 4814.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 4698.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 4605.5
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 4586.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 4529.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 4364.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 4294.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 4171.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 4144.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 4111.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 4071.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 3920.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 3819.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 3806.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 3775.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 3752.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 3695.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 3634.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 3587.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 3579.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 3572.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 3566.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 3526.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 3506.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 3469.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 3432.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 3396.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 3392.8
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 3378.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 3365.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 3358.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 3314.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 3255.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 3251.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 3211.7
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 3098.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 3097.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 3055.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 3050.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 3039.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 2968.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 2950.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 2939.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 2930.7
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 2930.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 2906.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 2886.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 2882.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2844.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 2842.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2839.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 2830.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2824.8
GTEX-1192X-2526-SM-59868 50-59 years, male 2824.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 2820.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 2815.3
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 2804.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 2780.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2726.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 2707.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 2692.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 2686.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 2685.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 2668.7
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 2662.2
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 2659.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2651.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 2648.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 2628.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 2618.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 2617.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 2594.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 2584.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 2582.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 2566.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 2563.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 2558.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 2557.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 2512.3
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 2490.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 2472.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 2469.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 2465.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 2462.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 2457.4
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 2449.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 2446.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 2438.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 2429.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 2428.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 2375.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 2370.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 2344.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 2342.9
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 2327.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 2319.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 2308.6
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 2302.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 2300.7
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 2300.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 2290.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 2285.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 2271.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 2245.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 2244.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 2243.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 2239.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 2233.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 2213.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 2212.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 2205.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 2193.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 2192.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 2187.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 2171.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 2171.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 2166.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 2163.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 2158.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 2147.4
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 2135.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 2125.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 2125.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 2123.9
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 2122.8
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 2121.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 2101.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 2094.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 2092.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 2091.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 2058.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 2047.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 2042.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 2036.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 2028.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 2023.8
GTEX-178AV-1226-SM-GOR11 40-49 years, male 2011.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 2004.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 2002.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1995.5
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 1990.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1990.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1980.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1971.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1970.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1969.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1966.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1961.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1961.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1944.8
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 1929.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1909.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1908.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1900.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1899.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1881.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1877.6
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 1876.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1874.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1866.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1863.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1861.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1849.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1838.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1824.8
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 1819.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1818.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1813.6
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 1812.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1812.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1810.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1804.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1800.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1799.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1798.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1794.6
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 1783.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1778.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1744.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1731.2
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 1728.3
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 1728.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1693.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1672.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1658.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1645.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1629.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1603.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1580.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1558.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1551.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1549.8
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 1542.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1529.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1519.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1513.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 1464.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1427.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1426.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1382.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1371.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1332.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1313.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1208.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 1193.7
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

269.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 269.9
FF:10024-101D6 15,40,85 years, mixed 269.9

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