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TISSUE PRIMARY DATA KIDNEY Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Kidney
Tissue proteome
Kidney
Tissue methods
KIDNEY - Expression summary
Protein expression
Kidneyi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Cells in glomeruli: Not detected
Cells in tubules: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2593.3 nTPM
HPA:1455.1 nTPM
GTEx:2593.3 nTPM
FANTOM5:237.8 Scaled Tags Per Million
KIDNEY - SINGLE CELL RNA EXPRESSION
Explore single cell type data

KIDNEY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA049719
Cells in glomeruli Not detected
Cells in tubules Medium


KIDNEY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1455.1
overview
Female, age 58
Kidney sample 55
nTPM: 1242.3
Cell types%
Cells in tubules:
60

Cells in glomeruli:
20

Fibroblasts:
5

Other cell types:
15

overview
Female, age 67
Kidney sample 56
nTPM: 1208.5
Cell types%
Cells in tubules:
70

Cells in glomeruli:
15

Fibroblasts:
10

Other cell types:
5

overview
Female, age 55
Kidney sample 57
nTPM: 1120.3
Cell types%
Cells in tubules:
80

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
5

overview
Male, age 46
Kidney sample 58
nTPM: 1370.3
Cell types%
Cells in tubules:
60

Cells in glomeruli:
25

Fibroblasts:
5

Other cell types:
10

overview
Female, age 57
Kidney sample 358
nTPM: 1353.5
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Male, age 78
Kidney sample 377
nTPM: 1459.7
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
20

overview
Male, age 73
Kidney sample 380
nTPM: 2762.1
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Female, age 59
Kidney sample 394
nTPM: 1242.1
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
15

overview
Female, age 48
Kidney sample 414
nTPM: 1337.3
Cell types%
Cells in tubules:
60

Cells in glomeruli:
5

Fibroblasts:
10

Other cell types:
25


KIDNEY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2593.3
GTEx sample id Sample description nTPM
Kidney - Cortex
Average nTPM: 2179.6
Samples: 104

Max nTPM: 4864.3
Min nTPM: 1212.9
Std nTPM: 668.2
Median nTPM: 2037.8
GTEX-11TTK-1926-SM-5PNW8 60-69 years, female 4864.3
GTEX-15DCD-1926-SM-HAV33 70-79 years, female 4747.1
GTEX-ZYT6-2226-SM-5GIC9 30-39 years, male 3618.1
GTEX-1O9I2-1926-SM-F2TBQ 50-59 years, male 3464.9
GTEX-13RTJ-2226-SM-5S2Q1 60-69 years, male 3348.7
GTEX-17F97-1926-SM-7IGM4 50-59 years, male 3339.2
GTEX-13NYB-1726-SM-5N9G2 40-49 years, male 3303.9
GTEX-1PWST-2226-SM-EVR3G 70-79 years, male 3267.5
GTEX-1JMPZ-1226-SM-ARU8Y 30-39 years, male 3230.0
GTEX-WL46-1926-SM-GNIN6 50-59 years, male 3090.4
GTEX-1JMQJ-1726-SM-E9U4V 50-59 years, male 3085.1
GTEX-1N2DW-1826-SM-EAZ54 50-59 years, male 3043.9
GTEX-T6MN-1826-SM-EXOHN 50-59 years, male 3028.2
GTEX-1JJE9-1026-SM-HL9TH 70-79 years, male 3017.1
GTEX-14E6D-2526-SM-5YYA9 50-59 years, male 3010.2
GTEX-1QP6S-1526-SM-EXUSG 40-49 years, male 2785.1
GTEX-ZDXO-0226-SM-4WKH7 60-69 years, male 2751.5
GTEX-1399S-0526-SM-5IJG8 30-39 years, female 2730.2
GTEX-1NV8Z-2226-SM-EXOJ2 60-69 years, male 2717.9
GTEX-13OVL-1826-SM-5KLZR 50-59 years, male 2649.1
GTEX-13112-2126-SM-5GCO4 50-59 years, male 2645.5
GTEX-1LH75-1326-SM-F2I1R 50-59 years, female 2637.7
GTEX-11OF3-1326-SM-5N9FJ 60-69 years, male 2622.4
GTEX-15CHQ-2126-SM-6871M 60-69 years, male 2615.4
GTEX-1RQEC-2426-SM-F2I1J 60-69 years, male 2502.9
GTEX-1CB4J-1926-SM-7MGX8 60-69 years, male 2442.3
GTEX-1GN1U-2126-SM-AHZ4J 50-59 years, female 2439.8
GTEX-14C5O-2026-SM-5YYB1 60-69 years, male 2439.0
GTEX-T5JC-1526-SM-4DM68 20-29 years, male 2412.7
GTEX-1OJC4-2326-SM-DTXA5 50-59 years, female 2411.3
GTEX-ZXG5-2026-SM-HAUZV 60-69 years, male 2395.8
GTEX-1C6VQ-2326-SM-7IGN1 50-59 years, male 2382.0
GTEX-17HHY-2326-SM-7KFSR 50-59 years, male 2378.5
GTEX-1J1OQ-1426-SM-AHZ3P 40-49 years, female 2372.7
GTEX-16XZY-1026-SM-HAV39 70-79 years, male 2338.5
GTEX-1KWVE-0826-SM-CXZKO 30-39 years, male 2318.8
GTEX-1R9PO-1626-SM-E6CPT 60-69 years, female 2311.5
GTEX-1GTWX-1826-SM-9QEHG 60-69 years, male 2309.8
GTEX-14PJ2-1826-SM-HL9UB 50-59 years, male 2305.0
GTEX-1JMQK-1926-SM-CJI3B 60-69 years, male 2304.2
GTEX-1ICLY-2026-SM-GA913 50-59 years, male 2297.2
GTEX-O5YV-1226-SM-EV795 60-69 years, female 2219.1
GTEX-1HB9E-1826-SM-D4P33 50-59 years, male 2211.3
GTEX-17F96-1926-SM-7MGWY 70-79 years, male 2143.2
GTEX-1117F-2126-SM-GIN9G 60-69 years, female 2130.6
GTEX-QDT8-1726-SM-EYYV6 30-39 years, female 2129.0
GTEX-14JG1-2326-SM-HAUZ5 40-49 years, male 2114.1
GTEX-16XZZ-2226-SM-HAV34 60-69 years, male 2112.0
GTEX-13FHP-2126-SM-GIN8J 50-59 years, male 2098.2
GTEX-ZLFU-0926-SM-5P9F8 40-49 years, male 2084.1
GTEX-1A3MW-2226-SM-73KUX 60-69 years, female 2069.5
GTEX-1F48J-2226-SM-7MXTN 50-59 years, female 2052.5
GTEX-1GF9W-1326-SM-7P8PX 60-69 years, male 2023.0
GTEX-1E2YA-1626-SM-7MGXS 50-59 years, male 2001.4
GTEX-15DYW-2026-SM-6AJBD 60-69 years, female 1999.7
GTEX-1BAJH-1826-SM-731DA 70-79 years, male 1999.4
GTEX-ZE9C-1426-SM-4WKGM 60-69 years, male 1997.8
GTEX-1HCVE-2126-SM-HL9UO 50-59 years, male 1976.0
GTEX-13O1R-2526-SM-5N9FW 60-69 years, male 1922.7
GTEX-14C39-2126-SM-664OH 40-49 years, male 1906.2
GTEX-1GF9V-1926-SM-9JGHE 60-69 years, male 1897.8
GTEX-13OW6-1826-SM-5N9F9 50-59 years, male 1877.5
GTEX-ZVZP-0926-SM-5GIDB 50-59 years, male 1872.1
GTEX-1LG7Y-2726-SM-D5OVW 50-59 years, male 1856.1
GTEX-QDVN-1726-SM-HL9TO 50-59 years, male 1838.7
GTEX-13OVI-1126-SM-5KLZF 60-69 years, female 1831.2
GTEX-W5X1-1626-SM-H7OGO 40-49 years, female 1824.7
GTEX-1IL2V-1826-SM-ARU7R 70-79 years, male 1821.1
GTEX-1MUQO-2526-SM-E9TJN 60-69 years, male 1781.7
GTEX-16Z82-2826-SM-HAUZZ 60-69 years, male 1763.8
GTEX-RN64-1626-SM-48FD7 50-59 years, male 1758.6
GTEX-1HBPI-2026-SM-CE6RZ 50-59 years, male 1734.6
GTEX-1QAET-2126-SM-F2TBS 50-59 years, male 1730.0
GTEX-147F4-2626-SM-5Q5CS 50-59 years, male 1729.3
GTEX-1I1GP-1926-SM-CNNQU 50-59 years, male 1701.8
GTEX-16MT8-1926-SM-7EPGL 60-69 years, female 1698.2
GTEX-S33H-1426-SM-EZ6L7 30-39 years, male 1695.5
GTEX-145MN-0326-SM-5QGQI 30-39 years, male 1681.9
GTEX-1IKK5-0926-SM-A9G2U 60-69 years, male 1679.0
GTEX-1A8FM-2026-SM-7P8RN 50-59 years, female 1672.8
GTEX-REY6-1826-SM-EAZAT 60-69 years, male 1660.5
GTEX-P4QS-1126-SM-3NMD5 60-69 years, male 1651.6
GTEX-12696-0926-SM-5FQTV 60-69 years, male 1639.5
GTEX-1H3NZ-2126-SM-9WPQ6 60-69 years, male 1626.2
GTEX-13O3O-1726-SM-GJ3RL 60-69 years, female 1614.7
GTEX-Y5V5-1226-SM-EYYVP 60-69 years, female 1608.9
GTEX-1EKGG-2226-SM-7IGOA 60-69 years, male 1605.8
GTEX-1HCU7-1826-SM-A9G2A 50-59 years, male 1572.0
GTEX-1N2EF-1426-SM-EXUSH 60-69 years, male 1571.5
GTEX-NFK9-1826-SM-HL9T3 40-49 years, male 1552.7
GTEX-1GMR3-2426-SM-7MXV2 40-49 years, male 1537.9
GTEX-Y5V6-2026-SM-5IFHO 60-69 years, male 1512.9
GTEX-1JJ6O-2526-SM-AHZ3J 60-69 years, male 1506.7
GTEX-1AX8Z-2326-SM-731CR 60-69 years, male 1483.6
GTEX-1H3VY-1926-SM-9JGHJ 50-59 years, male 1472.7
GTEX-ZYFG-1626-SM-5GZYY 60-69 years, female 1471.5
GTEX-QLQW-1626-SM-CMKFE 30-39 years, male 1440.2
GTEX-11GS4-2326-SM-5A5KS 60-69 years, male 1428.1
GTEX-1K9T9-1826-SM-CXZK2 50-59 years, female 1418.7
GTEX-ZC5H-1726-SM-5HL7X 40-49 years, female 1409.6
GTEX-XPVG-0526-SM-4B65N 50-59 years, male 1377.4
GTEX-12WSG-0826-SM-5EQ5A 50-59 years, female 1350.1
GTEX-1JMLX-1526-SM-AHZ3N 50-59 years, male 1340.8
GTEX-1497J-0826-SM-5NQAJ 60-69 years, male 1212.9
Show allShow less
Kidney - Medulla
Average nTPM: 2593.3
Samples: 11

Max nTPM: 4722.1
Min nTPM: 1504.2
Std nTPM: 842.8
Median nTPM: 2544.6
GTEX-N7MS-1526-SM-HAUZP 60-69 years, male 4722.1
GTEX-QEG5-2026-SM-H6Q6I 20-29 years, male 3224.2
GTEX-T6MN-1926-SM-GOQYD 50-59 years, male 2834.7
GTEX-SIU8-1926-SM-H7OG4 50-59 years, male 2804.9
GTEX-RU72-1926-SM-EAZ3F 50-59 years, female 2601.3
GTEX-T5JC-1626-SM-EZ6KW 20-29 years, male 2544.6
GTEX-R55E-2026-SM-EZ6L1 20-29 years, male 2442.0
GTEX-QEG4-1526-SM-GPRWK 30-39 years, male 2407.2
GTEX-S33H-1526-SM-GQ1CB 30-39 years, male 1799.9
GTEX-P4QS-1226-SM-HPAG8 60-69 years, male 1641.8
GTEX-TKQ2-0626-SM-EZ6LB 50-59 years, male 1504.2
Show allShow less

KIDNEY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

237.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Kidney
Scaled Tags Per Million: 237.8
FF:10017-101C8 60,62,63 years, female 237.8

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