We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RPS11
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RPS11
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2172.0 nTPM
HPA Brain:830.8 nTPM
GTEx:2172.0 nTPM
FANTOM5:172.9 Scaled Tags Per Million
Pig:192.3 nTPM
Mouse:719.8 nTPM
Allen mouse:10.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

830.8
Sample id Sample description nTPM
Amygdala
nTPM: 830.8
2695 Female, age 67, right hemisphere 1085.1
2514 Male, age 75, right hemisphere 848.5
2517 Female, age 94, left hemisphere 744.5
2814 Male, age 76, right hemisphere 743.4
1987 Female, age 91, left hemisphere 732.5
Basal amygdala
nTPM: 693.8
2827 Female, age 67, right hemisphere 948.5
2609 Male, age 75, right hemisphere 761.5
2110 Male, age 80, left hemisphere 658.0
2685 Female, age 94, left hemisphere 656.3
1955 Male, age 76, both hemispheres 574.0
2243 Female, age 91, right hemisphere 564.3
Central amygdala
nTPM: 754.5
2826 Female, age 94, left hemisphere 1167.9
2515 Male, age 75, right hemisphere 767.8
1905 Male, age 76, both hemispheres 650.0
2239 Male, age 80, left hemisphere 606.9
2701 Female, age 91, right hemisphere 579.9
Corticomedial amygdala
nTPM: 630.7
2428 Male, age 75, right hemisphere 711.6
2535 Female, age 67, right hemisphere 668.9
2429 Female, age 94, left hemisphere 621.8
2829 Male, age 80, left hemisphere 615.7
2240 Male, age 76, both hemispheres 587.2
2242 Female, age 91, right hemisphere 579.3
Lateral amygdala
nTPM: 795.6
2830 Female, age 67, right hemisphere 1219.7
2516 Male, age 75, right hemisphere 938.9
2534 Female, age 94, left hemisphere 837.7
2256 Male, age 80, left hemisphere 655.5
1883 Male, age 76, both hemispheres 579.1
2255 Female, age 91, right hemisphere 542.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2172.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 2172.0
Samples: 181

Max nTPM: 5698.9
Min nTPM: 985.4
Std nTPM: 768.8
Median nTPM: 2074.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 5698.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 5341.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 5223.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 4660.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 4216.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 4175.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 4138.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 3646.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 3592.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 3588.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 3567.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3500.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 3263.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 3246.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 3231.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 3225.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 3124.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 3081.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 3008.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2951.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2945.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 2937.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2895.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2840.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 2832.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 2819.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2808.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 2777.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 2672.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 2666.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 2654.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 2652.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 2636.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 2631.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 2627.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 2624.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 2609.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 2551.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 2550.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 2546.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 2516.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 2513.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2486.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 2461.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 2461.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 2454.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 2442.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 2434.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 2399.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 2391.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 2390.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 2383.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 2348.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 2346.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 2338.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 2335.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 2330.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2329.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 2312.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 2309.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 2295.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 2244.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 2242.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 2220.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 2219.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 2216.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 2206.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 2204.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 2202.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 2195.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 2184.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 2177.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 2159.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 2157.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 2152.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 2149.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 2140.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 2139.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 2139.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 2131.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 2129.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2128.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 2114.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 2112.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 2105.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 2084.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 2080.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 2079.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 2076.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 2075.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 2074.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 2047.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 2044.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 2042.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 2041.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2040.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 2021.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 2002.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1974.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1973.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1962.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1961.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1950.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1932.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1929.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 1916.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1915.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1915.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1907.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1890.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1886.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1866.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1859.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1850.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1848.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1840.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1830.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1828.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 1815.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 1809.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1804.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1799.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1799.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1790.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1783.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 1781.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1774.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1759.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1757.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1753.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 1750.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 1743.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1720.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1663.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1661.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1652.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1649.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1641.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1641.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1639.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1633.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1625.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1605.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1598.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1583.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1570.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1552.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1551.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 1549.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1531.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 1519.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1516.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1512.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1504.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1479.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1479.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 1466.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1453.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1452.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1440.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 1405.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1394.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1370.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1350.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1346.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1340.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1338.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1324.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 1312.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1311.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1306.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 1301.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1289.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1272.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1233.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1212.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1186.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1071.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1061.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1028.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 985.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

172.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 172.9
FF:10151-102I7 76 years, female 172.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

192.3
Pig sample Sample description nTPM
Amygdala
nTPM: 192.4
Samples: 4

Max nTPM: 257.3
Min nTPM: 123.4
Sample A Female 257.3
Sample B Female 212.2
Sample C Male 176.5
Sample D Male 123.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

719.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 719.8
Samples: 4

Max nTPM: 745.8
Min nTPM: 688.9
Sample A Male 688.9
Sample B Male 736.6
Sample C Female 745.8
Sample D Female 708.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.4
100143572 Antisense, RP_110407_01_F09, Mouse strain C57BL/6J (56 days, male) 10.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo