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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IFITM3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2375.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7420.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7137.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6463.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5626.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5507.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5445.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5261.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5152.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5152.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5125.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5037.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4970.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4933.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4876.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4850.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4734.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4705.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4680.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4672.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4626.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4584.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4526.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4514.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4426.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4380.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4356.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4306.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4287.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4285.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4205.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4179.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4115.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4115.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4048.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4045.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4035.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3978.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3898.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3876.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3874.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3860.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3730.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3709.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3647.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3645.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3630.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3610.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3609.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3606.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3593.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3589.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3554.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3538.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3524.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3472.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3467.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3463.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3453.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3449.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3410.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3406.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3402.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3374.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3370.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3320.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3313.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3313.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3287.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3281.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
3274.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3234.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3232.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3227.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3225.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3220.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3212.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3192.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3190.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3188.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3184.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3173.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3150.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
3140.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3126.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3113.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3084.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3038.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3023.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3020.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3009.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3007.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3004.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2999.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2988.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2979.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2977.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2967.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2949.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2947.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2907.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2903.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
2903.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2884.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2872.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2853.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2835.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2826.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2821.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2821.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2810.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2807.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2794.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2786.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2769.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2762.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2753.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2743.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2740.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2726.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
2720.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2708.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2701.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2692.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2680.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2669.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2666.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2651.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2631.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2616.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2604.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2599.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2595.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2576.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2572.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2571.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2566.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2555.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2553.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2551.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2548.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2546.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
2534.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2513.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2496.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2495.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2495.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2495.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2494.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2486.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2484.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2473.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2472.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2470.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2467.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2458.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2441.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2437.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2432.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2410.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2408.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2392.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2389.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2384.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2379.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2378.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2370.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2370.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2356.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2354.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2352.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2342.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2327.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2324.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2323.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
2312.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
2309.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2299.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2298.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2296.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2277.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2267.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2264.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2263.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2259.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2256.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2245.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2240.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2218.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2217.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2199.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2199.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2182.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
2181.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2162.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2162.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
2141.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2140.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2138.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2135.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2135.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2119.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2107.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2107.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2090.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2082.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
2061.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
2048.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2037.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2035.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2035.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2031.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2018.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1998.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1970.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1957.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1954.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1951.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1947.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1947.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1931.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1917.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1911.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1904.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1899.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1893.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1887.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1881.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1878.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1870.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1842.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1840.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1831.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1825.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1822.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1822.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1814.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1814.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1793.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1789.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1787.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1784.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1766.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1729.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1724.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1718.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
1718.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1712.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1710.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1709.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1706.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1702.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1700.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1689.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1665.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1665.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1661.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1655.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1646.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1639.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1630.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1627.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1618.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1602.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1580.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1576.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1553.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1548.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1535.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1528.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1525.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1524.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1515.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1513.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1511.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1497.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1474.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1473.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1462.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1454.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1449.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1448.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1443.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1441.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1430.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1418.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1408.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1391.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1367.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1362.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1354.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1352.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1341.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1317.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1307.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1293.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1282.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1276.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1264.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1260.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1220.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1178.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1177.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1163.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1148.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1140.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1133.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1128.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1122.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1113.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1098.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1092.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1083.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1066.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1062.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1058.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1058.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1044.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1039.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1033.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1028.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1022.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1015.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
992.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
970.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
967.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
964.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
952.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
949.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
938.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
934.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
928.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
927.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
919.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
910.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
884.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
880.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
880.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
879.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
855.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
845.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
831.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
818.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
791.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
775.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
771.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
750.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
740.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
738.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
730.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
725.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
699.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
608.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
585.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
564.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
563.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
532.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
520.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
500.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
477.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
387.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
366.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IFITM3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1279.3
Number of samples
231
Samples
Sample
Description
TPM
DO50805
0 years, male, NA, stage:2, alive, 690 days
4472.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
3726.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
3045.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2977.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
2918.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
2910.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
2789.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
2748.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
2683.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
2587.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
2506.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
2360.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
2355.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2349.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
2314.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
2283.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
2266.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2228.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
2164.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
2153.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2138.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
2091.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2089.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2087.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
2073.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
2060.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2044.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
2041.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
2019.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
1948.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
1943.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
1928.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
1875.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
1873.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1849.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
1845.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
1844.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
1844.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
1835.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
1830.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1806.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
1781.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1761.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
1752.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
1749.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
1740.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
1717.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1697.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
1691.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1688.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
1672.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
1667.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
1658.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
1633.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
1623.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
1612.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
1599.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
1577.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
1573.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
1568.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
1557.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
1552.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
1541.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
1524.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
1523.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1520.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
1516.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1510.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
1508.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
1495.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
1494.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
1475.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
1469.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
1454.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
1449.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
1442.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
1441.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1434.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
1432.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
1423.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
1422.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
1421.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
1407.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
1399.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
1386.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
1382.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
1379.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
1378.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
1361.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
1359.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
1358.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
1348.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
1347.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
1346.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
1339.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
1335.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
1332.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
1329.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
1315.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
1314.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
1311.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
1296.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
1293.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1293.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
1288.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1284.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
1272.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
1260.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1224.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
1219.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
1207.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
1185.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
1183.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1183.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
1178.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
1178.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1176.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
1176.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
1152.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1148.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
1144.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
1139.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
1130.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
1127.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1125.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1116.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
1115.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
1114.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1111.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1109.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
1107.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
1097.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
1096.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1088.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
1082.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
1078.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
1076.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
1076.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
1064.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
1061.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1057.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
1056.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
1055.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
1050.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
1049.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
1049.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
1043.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
1037.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1035.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
1025.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1014.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
1011.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1004.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
998.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
998.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
996.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
974.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
962.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
958.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
930.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
930.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
925.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
911.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
899.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
895.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
893.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
891.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
887.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
877.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
866.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
865.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
859.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
833.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
825.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
823.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
821.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
815.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
804.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
793.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
788.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
781.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
771.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
767.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
765.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
759.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
758.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
758.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
739.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
726.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
725.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
723.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
722.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
716.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
702.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
698.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
677.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
673.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
665.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
645.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
637.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
626.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
623.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
611.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
609.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
603.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
577.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
577.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
562.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
555.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
543.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
540.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
529.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
497.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
488.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
488.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
480.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
461.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
441.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
432.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
414.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
411.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
370.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
358.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
247.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
241.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
228.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
210.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
177.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
163.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
135.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
86.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
573
Tumor
2.1
715
Tumor
1.9
221
Tumor
1.5
545
Tumor
1.5
195
Tumor
1.2
343
Tumor
1.2
983
Tumor
1.1
943
Tumor
1.0
861
Tumor
1.0
493
Tumor
1.0
1015
Tumor
1.0
883
Tumor
1.0
557
Tumor
0.9
467
Tumor
0.9
527
Tumor
0.8
697
Tumor
0.8
524
Normal
0.7
536
Normal
0.7
443
Tumor
0.7
223
Tumor
0.7
393
Tumor
0.6
361
Tumor
0.6
937
Tumor
0.6
917
Tumor
0.5
823
Tumor
0.5
385
Tumor
0.5
187
Tumor
0.5
365
Tumor
0.5
538
Normal
0.4
471
Tumor
0.4
815
Tumor
0.4
537
Tumor
0.3
523
Tumor
0.3
283
Tumor
0.3
1041
Tumor
0.3
955
Tumor
0.3
415
Tumor
0.2
663
Tumor
0.2
311
Tumor
0.2
395
Tumor
0.2
857
Tumor
0.2
1025
Tumor
0.2
413
Tumor
0.2
113
Tumor
0.2
665
Tumor
0.2
284
Normal
0.2
185
Tumor
0.2
617
Tumor
0.1
574
Normal
0.1
713
Tumor
0.1
267
Tumor
0.1
978
Normal
0.1
222
Normal
0.1
716
Normal
0.1
192
Normal
0.1
353
Tumor
0.1
112
Tumor
0.1
515
Tumor
0.1
217
Tumor
0.1
224
Normal
0.1
647
Tumor
0.1
285
Tumor
0.1
483
Tumor
0.1
916
Normal
0.0
981
Tumor
0.0
383
Tumor
0.0
416
Normal
0.0
982
Normal
0.0
392
Normal
0.0
213
Tumor
0.0
135
Tumor
0.0
212
Normal
0.0
478
Normal
0.0
666
Normal
0.0
386
Normal
0.0
421
Tumor
0.0
171
Tumor
0.0
327
Tumor
0.0
375
Tumor
0.0
427
Tumor
0.0
352
Normal
0.0
358
Normal
0.0
196
Normal
0.0
257
Tumor
0.0
984
Normal
0.0
344
Normal
0.0
228
Normal
0.0
446
Normal
0.0
497
Tumor
-0.1
956
Normal
-0.1
963
Tumor
-0.1
218
Normal
-0.1
434
Normal
-0.1
1016
Normal
-0.1
394
Normal
-0.1
533
Tumor
-0.1
516
Normal
-0.1
817
Tumor
-0.1
1028
Normal
-0.1
696
Normal
-0.1
865
Tumor
-0.1
452
Normal
-0.1
387
Tumor
-0.1
1044
Normal
-0.1
461
Tumor
-0.1
526
Normal
-0.1
286
Normal
-0.1
1014
Normal
-0.1
388
Normal
-0.1
492
Normal
-0.1
368
Normal
-0.1
124
Normal
-0.1
354
Normal
-0.1
553
Tumor
-0.1
1043
Tumor
-0.1
966
Normal
-0.1
873
Tumor
-0.1
447
Tumor
-0.1
396
Normal
-0.1
433
Tumor
-0.1
498
Normal
-0.1
262
Normal
-0.1
915
Tumor
-0.2
755
Tumor
-0.2
554
Normal
-0.2
685
Tumor
-0.2
188
Normal
-0.2
881
Tumor
-0.2
563
Tumor
-0.2
342
Normal
-0.2
514
Normal
-0.2
391
Tumor
-0.2
852
Normal
-0.2
721
Tumor
-0.2
464
Normal
-0.2
494
Normal
-0.2
975
Tumor
-0.2
451
Tumor
-0.2
816
Normal
-0.2
186
Normal
-0.2
918
Normal
-0.2
271
Tumor
-0.2
162
Normal
-0.2
172
Normal
-0.2
432
Normal
-0.2
954
Normal
-0.2
924
Normal
-0.3
384
Normal
-0.3
686
Normal
-0.3
436
Normal
-0.3
558
Normal
-0.3
125
Tumor
-0.3
862
Normal
-0.3
444
Normal
-0.3
448
Normal
-0.3
944
Normal
-0.3
1032
Normal
-0.3
568
Normal
-0.3
191
Tumor
-0.3
671
Tumor
-0.3
123
Tumor
-0.3
357
Tumor
-0.3
672
Normal
-0.3
953
Tumor
-0.3
572
Normal
-0.3
642
Normal
-0.3
431
Tumor
-0.3
142
Normal
-0.3
874
Normal
-0.3
161
Tumor
-0.3
214
Normal
-0.3
111
Normal
-0.3
1026
Normal
-0.3
778
Normal
-0.3
976
Normal
-0.3
268
Normal
-0.3
423
Tumor
-0.3
925
Tumor
-0.3
866
Normal
-0.3
456
Normal
-0.3
641
Tumor
-0.3
662
Normal
-0.3
425
Tumor
-0.4
376
Normal
-0.4
126
Normal
-0.4
145
Tumor
-0.4
366
Normal
-0.4
858
Normal
-0.4
546
Normal
-0.4
958
Normal
-0.4
148
Normal
-0.4
231
Tumor
-0.4
867
Tumor
-0.4
913
Tumor
-0.4
1031
Tumor
-0.4
355
Tumor
-0.4
636
Normal
-0.4
364
Normal
-0.4
1022
Normal
-0.4
864
Normal
-0.4
926
Normal
-0.4
488
Normal
-0.4
1046
Normal
-0.4
952
Normal
-0.4
147
Tumor
-0.4
491
Tumor
-0.4
1045
Tumor
-0.4
141
Tumor
-0.4
661
Tumor
-0.4
211
Tumor
-0.4
518
Normal
-0.4
362
Normal
-0.4
824
Normal
-0.4
261
Tumor
-0.4
455
Tumor
-0.4
722
Normal
-0.4
367
Tumor
-0.4
297
Tumor
-0.4
564
Normal
-0.4
428
Normal
-0.4
341
Tumor
-0.5
714
Normal
-0.5
412
Normal
-0.5
814
Normal
-0.5
482
Normal
-0.5
463
Tumor
-0.5
1042
Normal
-0.5
914
Normal
-0.5
477
Tumor
-0.5
422
Normal
-0.5
312
Normal
-0.5
967
Tumor
-0.5
328
Normal
-0.5
571
Tumor
-0.5
351
Tumor
-0.5
258
Normal
-0.5
474
Normal
-0.5
818
Normal
-0.5
868
Normal
-0.5
567
Tumor
-0.5
968
Normal
-0.5
756
Normal
-0.5
462
Normal
-0.5
272
Normal
-0.5
884
Normal
-0.5
424
Normal
-0.5
466
Normal
-0.5
525
Tumor
-0.5
977
Tumor
-0.5
923
Tumor
-0.5
921
Tumor
-0.5
922
Normal
-0.5
723
Tumor
-0.5
664
Normal
-0.6
114
Normal
-0.6
332
Normal
-0.6
938
Normal
-0.6
878
Normal
-0.6
414
Normal
-0.6
635
Tumor
-0.6
535
Tumor
-0.6
912
Normal
-0.6
698
Normal
-0.6
426
Normal
-0.6
137
Tumor
-0.6
648
Normal
-0.6
356
Normal
-0.6
227
Tumor
-0.6
136
Normal
-0.6
146
Normal
-0.6
435
Tumor
-0.6
628
Normal
-0.6
534
Normal
-0.6
128
Normal
-0.6
813
Tumor
-0.6
877
Tumor
-0.6
445
Tumor
-0.6
468
Normal
-0.6
882
Normal
-0.6
232
Normal
-0.6
363
Tumor
-0.6
957
Tumor
-0.6
851
Tumor
-0.6
481
Tumor
-0.6
728
Normal
-0.6
132
Normal
-0.6
618
Normal
-0.7
472
Normal
-0.7
528
Normal
-0.7
738
Normal
-0.7
277
Tumor
-0.7
278
Normal
-0.7
411
Tumor
-0.7
616
Normal
-0.7
138
Normal
-0.7
487
Tumor
-0.7
484
Normal
-0.7
964
Normal
-0.7
1027
Tumor
-0.7
786
Normal
-0.7
744
Normal
-0.7
737
Tumor
-0.7
1021
Tumor
-0.7
331
Tumor
-0.7
1013
Tumor
-0.8
127
Tumor
-0.8
742
Normal
-0.8
911
Tumor
-0.8
785
Tumor
-0.8
465
Tumor
-0.8
695
Tumor
-0.8
724
Normal
-0.8
517
Tumor
-0.9
298
Normal
-0.9
473
Tumor
-0.9
745
Tumor
-0.9
513
Tumor
-0.9
746
Normal
-0.9
741
Tumor
-0.9
314
Normal
-0.9
863
Tumor
-0.9
777
Tumor
-1.0
131
Tumor
-1.0
951
Tumor
-1.0
615
Tumor
-1.1
313
Tumor
-1.1
627
Tumor
-1.2
727
Tumor
-1.2
743
Tumor
-1.3
965
Tumor
-1.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.