MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:733.4 nTPM
HPA Brain:380.7 nTPM
GTEx:733.4 nTPM
FANTOM5:290.7 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 380.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 246.5
2666 Male, age 74, left hemisphere 361.1
2828 Female, age 72, unknown 357.5
1870 Female, age 42, unknown 312.9
1830 Male, age 51, unknown 241.7
1827 Male, age 72, unknown 236.8
1833 Male, age 53, unknown 233.3
2411 Female, age 72, unknown 214.6
2019 Male, age 18, unknown 203.6
2586 Male, age 75, left hemisphere 164.0
2219 Male, age 76, both hemispheres 139.7
Dorsal raphe nucleus
nTPM: 294.8
1828 Male, age 53, unknown 358.9
2016 Female, age 72, unknown 297.1
2047 Male, age 72, unknown 282.1
2750 Male, age 76, both hemispheres 268.3
2298 Female, age 72, unknown 267.6
Inferior colliculus
nTPM: 258.2
1848 Female, age 42, unknown 273.9
2097 Female, age 72, unknown 270.3
2849 Male, age 72, unknown 254.9
1890 Male, age 53, unknown 233.5
Median raphe nucleus
nTPM: 336.4
2220 Male, age 76, midline 336.4
Periaquaductal grey, anterior
nTPM: 318.7
1947 Male, age 18, unknown 331.9
2502 Female, age 75, unknown 318.2
1795 Male, age 51, unknown 305.8
Periaquaductal grey, dorsal
nTPM: 323.4
2850 Male, age 76, both hemispheres 550.9
1831 Male, age 72, unknown 293.5
2464 Female, age 72, unknown 239.7
1840 Male, age 53, unknown 209.4
Periaquaductal grey, lateral
nTPM: 380.7
2140 Male, age 76, both hemispheres 461.6
2053 Male, age 18, unknown 369.4
2272 Male, age 74, both hemispheres 311.3
Pretectal area
nTPM: 253.8
2825 Male, age 18, unknown 313.4
1817 Female, age 42, unknown 301.9
2316 Male, age 76, right hemisphere 290.8
2224 Female, age 72, unknown 288.4
2667 Female, age 75, unknown 277.5
2273 Male, age 74, both hemispheres 259.5
1944 Female, age 72, unknown 254.1
1815 Male, age 53, unknown 248.1
2007 Male, age 72, unknown 218.3
1816 Male, age 51, unknown 198.3
2407 Male, age 75, both hemispheres 140.9
Red nucleus
nTPM: 309.3
1954 Female, age 42, unknown 367.1
1821 Female, age 72, unknown 358.6
2503 Female, age 72, unknown 346.7
2725 Female, age 75, unknown 344.8
2823 Male, age 76, right hemisphere 342.3
2769 Male, age 72, unknown 331.9
2227 Male, age 72, unknown 331.6
1865 Male, age 51, unknown 328.2
1904 Male, age 53, unknown 286.7
2588 Male, age 74, left hemisphere 268.4
2785 Male, age 18, unknown 238.7
2584 Male, age 75, left hemisphere 166.2
Substantia nigra
nTPM: 276.5
2665 Male, age 74, both hemispheres 375.9
2699 Male, age 18, unknown 368.0
1851 Male, age 51, unknown 338.2
1916 Female, age 42, unknown 318.0
2409 Female, age 72, unknown 265.3
1889 Female, age 72, unknown 253.7
1941 Male, age 53, unknown 253.1
2590 Female, age 75, unknown 241.4
2241 Male, age 72, unknown 205.8
2583 Male, age 75, right hemisphere 145.3
Superior colliculus
nTPM: 264.2
1796 Male, age 53, unknown 365.6
1995 Male, age 72, unknown 336.6
1913 Female, age 42, unknown 317.8
2087 Female, age 72, unknown 290.1
2587 Male, age 74, left hemisphere 288.4
1839 Male, age 51, unknown 246.9
2668 Female, age 75, unknown 222.3
1895 Male, age 76, right hemisphere 217.9
2261 Male, age 18, unknown 211.0
2664 Male, age 75, both hemispheres 145.2
Ventral tegmental area
nTPM: 315.1
1915 Female, age 42, unknown 348.1
2218 Male, age 76, both hemispheres 346.7
2021 Male, age 53, unknown 319.7
2223 Female, age 72, unknown 315.3
1942 Male, age 51, unknown 301.2
2410 Female, age 72, unknown 259.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 733.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 733.4
Samples: 183

Max nTPM: 3190.4
Min nTPM: 97.4
Std nTPM: 517.0
Median nTPM: 577.0
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 3190.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 2957.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 2589.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 2553.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 2370.8
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 2257.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 2139.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1712.3
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1691.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1685.4
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 1613.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 290.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 290.7
FF:10158-103A5 76 years, female 290.7

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