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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
544.8
nTPM
HPA Brain:
380.7
nTPM
GTEx:
544.8
nTPM
FANTOM5:
290.7
Scaled Tags Per Million
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
380.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 246.5
2666
Male, age 74, left hemisphere
361.1
2828
Female, age 72, unknown
357.5
1870
Female, age 42, unknown
312.9
1830
Male, age 51, unknown
241.7
1827
Male, age 72, unknown
236.8
1833
Male, age 53, unknown
233.3
2411
Female, age 72, unknown
214.6
2019
Male, age 18, unknown
203.6
2586
Male, age 75, left hemisphere
164.0
2219
Male, age 76, both hemispheres
139.7
Dorsal raphe nucleus nTPM: 294.8
1828
Male, age 53, unknown
358.9
2016
Female, age 72, unknown
297.1
2047
Male, age 72, unknown
282.1
2750
Male, age 76, both hemispheres
268.3
2298
Female, age 72, unknown
267.6
Inferior colliculus nTPM: 258.2
1848
Female, age 42, unknown
273.9
2097
Female, age 72, unknown
270.3
2849
Male, age 72, unknown
254.9
1890
Male, age 53, unknown
233.5
Median raphe nucleus nTPM: 336.4
2220
Male, age 76, midline
336.4
Periaquaductal grey, anterior nTPM: 318.7
1947
Male, age 18, unknown
331.9
2502
Female, age 75, unknown
318.2
1795
Male, age 51, unknown
305.8
Periaquaductal grey, dorsal nTPM: 323.4
2850
Male, age 76, both hemispheres
550.9
1831
Male, age 72, unknown
293.5
2464
Female, age 72, unknown
239.7
1840
Male, age 53, unknown
209.4
Periaquaductal grey, lateral nTPM: 380.7
2140
Male, age 76, both hemispheres
461.6
2053
Male, age 18, unknown
369.4
2272
Male, age 74, both hemispheres
311.3
Pretectal area nTPM: 253.8
2825
Male, age 18, unknown
313.4
1817
Female, age 42, unknown
301.9
2316
Male, age 76, right hemisphere
290.8
2224
Female, age 72, unknown
288.4
2667
Female, age 75, unknown
277.5
2273
Male, age 74, both hemispheres
259.5
1944
Female, age 72, unknown
254.1
1815
Male, age 53, unknown
248.1
2007
Male, age 72, unknown
218.3
1816
Male, age 51, unknown
198.3
2407
Male, age 75, both hemispheres
140.9
Red nucleus nTPM: 309.3
1954
Female, age 42, unknown
367.1
1821
Female, age 72, unknown
358.6
2503
Female, age 72, unknown
346.7
2725
Female, age 75, unknown
344.8
2823
Male, age 76, right hemisphere
342.3
2769
Male, age 72, unknown
331.9
2227
Male, age 72, unknown
331.6
1865
Male, age 51, unknown
328.2
1904
Male, age 53, unknown
286.7
2588
Male, age 74, left hemisphere
268.4
2785
Male, age 18, unknown
238.7
2584
Male, age 75, left hemisphere
166.2
Substantia nigra nTPM: 276.5
2665
Male, age 74, both hemispheres
375.9
2699
Male, age 18, unknown
368.0
1851
Male, age 51, unknown
338.2
1916
Female, age 42, unknown
318.0
2409
Female, age 72, unknown
265.3
1889
Female, age 72, unknown
253.7
1941
Male, age 53, unknown
253.1
2590
Female, age 75, unknown
241.4
2241
Male, age 72, unknown
205.8
2583
Male, age 75, right hemisphere
145.3
Superior colliculus nTPM: 264.2
1796
Male, age 53, unknown
365.6
1995
Male, age 72, unknown
336.6
1913
Female, age 42, unknown
317.8
2087
Female, age 72, unknown
290.1
2587
Male, age 74, left hemisphere
288.4
1839
Male, age 51, unknown
246.9
2668
Female, age 75, unknown
222.3
1895
Male, age 76, right hemisphere
217.9
2261
Male, age 18, unknown
211.0
2664
Male, age 75, both hemispheres
145.2
Ventral tegmental area nTPM: 315.1
1915
Female, age 42, unknown
348.1
2218
Male, age 76, both hemispheres
346.7
2021
Male, age 53, unknown
319.7
2223
Female, age 72, unknown
315.3
1942
Male, age 51, unknown
301.2
2410
Female, age 72, unknown
259.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
544.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 544.8
Samples: 139
Max nTPM: 2160.5
Min nTPM: 78.2
Std nTPM: 365.9
Median nTPM: 439.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
2160.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
1918.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1858.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1747.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
1692.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1593.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
1240.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1232.4
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
1151.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1123.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1048.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1031.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1012.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
955.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
932.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
915.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
912.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
887.1
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
882.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
860.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
857.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
854.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
820.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
799.9
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
791.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
763.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
721.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
718.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
712.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
697.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
693.1
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
684.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
657.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
650.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
644.4
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
631.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
628.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
620.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
617.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
616.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
601.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
595.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
590.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
587.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
583.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
575.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
569.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
531.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
528.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
526.9
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
524.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
524.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
514.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
506.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
504.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
500.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
489.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
478.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
475.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
468.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
466.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
466.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
460.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
459.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
455.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
454.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
444.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
443.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
443.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
439.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
438.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
434.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
429.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
429.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
424.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
421.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
414.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
412.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
411.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
411.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
410.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
409.4
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
407.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
405.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
403.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
400.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
399.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
391.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
388.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
369.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
364.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
359.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
351.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
348.6
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
345.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
345.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
343.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
342.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
338.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
334.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
333.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
329.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
326.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
324.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
322.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
315.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
315.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
311.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
301.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
295.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
282.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
276.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
275.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
264.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
263.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
262.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
258.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
255.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
250.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
250.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
243.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
240.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
240.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
236.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
232.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
225.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
219.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
216.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
211.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
205.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
203.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
201.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
189.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
180.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
153.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
150.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
147.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
106.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
78.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.