We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
IFITM3
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • IFITM3
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:590.7 nTPM
HPA Brain:309.3 nTPM
GTEx:590.7 nTPM
FANTOM5:273.2 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

309.3
Sample id Sample description nTPM
Amygdala
nTPM: 309.3
2695 Female, age 67, right hemisphere 466.4
1987 Female, age 91, left hemisphere 323.7
2814 Male, age 76, right hemisphere 307.4
2517 Female, age 94, left hemisphere 236.7
2514 Male, age 75, right hemisphere 212.2
Basal amygdala
nTPM: 242.7
1955 Male, age 76, both hemispheres 278.1
2827 Female, age 67, right hemisphere 263.6
2110 Male, age 80, left hemisphere 254.5
2243 Female, age 91, right hemisphere 249.1
2609 Male, age 75, right hemisphere 225.7
2685 Female, age 94, left hemisphere 185.4
Central amygdala
nTPM: 301.6
2826 Female, age 94, left hemisphere 409.2
2515 Male, age 75, right hemisphere 334.1
1905 Male, age 76, both hemispheres 285.5
2239 Male, age 80, left hemisphere 261.7
2701 Female, age 91, right hemisphere 217.6
Corticomedial amygdala
nTPM: 230.1
2240 Male, age 76, both hemispheres 274.3
2242 Female, age 91, right hemisphere 246.9
2829 Male, age 80, left hemisphere 235.0
2428 Male, age 75, right hemisphere 229.2
2535 Female, age 67, right hemisphere 208.9
2429 Female, age 94, left hemisphere 185.9
Lateral amygdala
nTPM: 276.3
2830 Female, age 67, right hemisphere 371.8
2534 Female, age 94, left hemisphere 303.8
2256 Male, age 80, left hemisphere 265.5
1883 Male, age 76, both hemispheres 248.6
2516 Male, age 75, right hemisphere 244.9
2255 Female, age 91, right hemisphere 223.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

590.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 590.7
Samples: 181

Max nTPM: 3148.0
Min nTPM: 116.9
Std nTPM: 412.1
Median nTPM: 449.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 3148.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 2034.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1829.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 1771.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1676.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1601.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1597.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1479.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1462.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1448.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 1378.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1354.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1309.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1263.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1185.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1180.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1102.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1102.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1099.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1099.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 1049.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1040.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1037.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1001.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 992.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 981.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 951.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 940.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 937.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 912.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 910.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 844.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 838.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 837.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 823.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 820.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 807.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 794.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 766.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 765.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 758.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 756.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 737.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 725.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 723.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 707.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 688.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 686.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 684.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 675.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 670.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 668.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 668.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 634.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 624.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 622.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 621.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 620.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 620.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 617.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 614.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 609.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 607.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 603.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 594.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 589.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 589.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 580.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 580.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 574.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 573.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 565.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 560.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 559.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 554.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 551.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 548.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 535.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 527.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 527.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 505.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 485.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 483.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 480.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 461.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 460.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 459.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 459.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 457.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 454.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 449.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 445.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 444.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 442.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 432.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 431.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 430.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 422.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 420.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 415.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 414.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 411.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 407.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 405.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 404.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 395.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 394.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 392.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 391.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 389.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 388.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 383.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 383.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 376.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 375.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 374.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 374.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 373.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 373.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 370.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 367.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 365.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 364.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 364.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 363.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 361.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 356.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 356.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 351.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 351.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 350.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 349.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 347.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 345.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 343.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 340.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 339.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 338.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 327.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 326.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 321.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 319.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 316.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 313.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 309.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 308.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 305.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 301.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 299.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 296.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 293.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 285.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 284.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 279.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 277.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 274.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 273.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 262.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 251.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 245.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 240.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 228.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 227.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 220.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 219.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 214.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 209.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 208.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 206.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 205.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 197.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 188.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 187.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 184.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 184.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 183.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 183.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 176.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 172.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 163.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 116.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

273.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 273.2
FF:10151-102I7 76 years, female 273.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo