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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
415.4
nTPM
HPA Brain:
314.3
nTPM
GTEx:
415.4
nTPM
FANTOM5:
151.6
Scaled Tags Per Million
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA004337
Glial cells
Not detected
Neuronal cells
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
314.3
Sample id
Sample description
nTPM
Hippocampus nTPM: 314.3
2529
Female, age 94, left hemisphere
369.4
1855
Male, age 76, left hemisphere
324.8
2148
Female, age 91, left hemisphere
308.4
1911
Female, age 85, right hemisphere
306.8
2621
Female, age 67, right hemisphere
298.1
1898
Male, age 80, left hemisphere
278.2
Dentate gyrus nTPM: 264.2
2530
Female, age 94, left hemisphere
318.6
2246
Female, age 85, both hemispheres
272.4
2010
Male, age 76, both hemispheres
268.7
2528
Male, age 74, both hemispheres
268.1
2531
Female, age 67, both hemispheres
254.6
1927
Female, age 91, both hemispheres
202.8
Entorhinal gyrus nTPM: 237.2
2117
Female, age 91, right hemisphere
336.1
2686
Male, age 75, right hemisphere
275.2
1787
Male, age 76, left hemisphere
254.9
1938
Female, age 85, left hemisphere
235.5
2764
Male, age 80, right hemisphere
181.4
2613
Female, age 94, left hemisphere
140.5
Hippocampus, CA1 nTPM: 240.6
2527
Male, age 74, both hemispheres
323.1
1873
Female, age 85, both hemispheres
262.4
2045
Male, age 76, both hemispheres
236.0
2082
Female, age 91, right hemisphere
222.2
2749
Male, age 80, left hemisphere
159.2
Hippocampus, CA2 nTPM: 258.5
2249
Male, age 74, both hemispheres
365.5
2437
Female, age 94, left hemisphere
282.6
1940
Female, age 85, left hemisphere
269.3
2113
Female, age 91, right hemisphere
259.5
1963
Male, age 80, left hemisphere
203.7
1892
Male, age 76, both hemispheres
170.6
Hippocampus, CA3 nTPM: 255.5
2436
Male, age 74, both hemispheres
333.3
2861
Female, age 67, both hemispheres
281.1
1891
Female, age 85, both hemispheres
274.6
2620
Female, age 94, left hemisphere
224.1
1867
Male, age 76, both hemispheres
210.9
2137
Male, age 80, left hemisphere
208.9
Parahippocampal cortex nTPM: 233.3
2250
Female, age 67, right hemisphere
340.6
2245
Female, age 91, both hemispheres
261.2
2018
Male, age 76, both hemispheres
253.8
1990
Female, age 91, right hemisphere
247.0
2692
Male, age 74, both hemispheres
234.5
2622
Female, age 67, right hemisphere
230.1
2532
Female, age 72, left hemisphere
229.9
1933
Female, age 85, both hemispheres
197.3
1850
Male, age 80, both hemispheres
182.6
2693
Female, age 94, both hemispheres
156.4
Perirhinal gyrus nTPM: 197.0
2521
Female, age 94, right hemisphere
223.3
1841
Female, age 85, right hemisphere
210.2
1794
Male, age 80, right hemisphere
191.3
1847
Female, age 91, left hemisphere
189.9
2848
Male, age 76, right hemisphere
170.5
Subiculum nTPM: 261.1
2619
Male, age 74, both hemispheres
304.2
2042
Male, age 76, both hemispheres
286.9
2438
Female, age 94, left hemisphere
278.6
2729
Female, age 91, right hemisphere
263.8
1977
Female, age 85, both hemispheres
224.2
1901
Male, age 80, both hemispheres
209.1
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
415.4
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 415.4
Samples: 197
Max nTPM: 2587.7
Min nTPM: 97.2
Std nTPM: 312.1
Median nTPM: 336.7
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
2587.7
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
2073.9
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
1334.5
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
1300.9
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
1294.2
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
1249.3
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
1011.9
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
1005.2
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
988.3
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
978.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
971.5
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
969.8
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
956.8
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
891.2
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
865.6
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
812.1
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
791.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
773.0
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
766.4
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
740.1
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
738.0
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
727.2
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
705.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
697.0
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
691.8
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
681.2
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
677.4
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
671.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
656.3
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
654.4
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
650.6
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
644.2
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
622.7
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
617.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
616.3
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
600.9
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
591.4
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
588.1
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
570.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
566.1
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
565.6
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
542.4
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
541.6
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
525.5
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
522.3
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
513.6
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
496.6
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
496.3
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
486.1
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
485.7
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
485.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
482.6
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
481.3
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
475.8
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
474.7
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
472.1
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
450.7
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
447.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
446.6
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
446.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
441.1
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
436.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
435.5
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
430.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
426.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
409.1
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
405.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
402.5
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
399.0
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
393.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
393.5
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
391.5
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
389.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
387.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
386.8
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
385.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
385.4
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
375.8
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
374.2
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
368.0
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
362.8
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
355.7
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
354.9
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
353.8
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
352.8
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
349.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
347.2
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
346.7
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
346.1
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
344.7
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
344.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
344.0
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
341.5
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
340.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
339.9
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
338.5
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
338.3
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
337.1
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
336.7
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
332.1
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
331.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
329.3
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
322.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
322.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
322.3
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
317.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
316.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
315.6
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
313.8
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
312.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
308.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
293.9
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
290.5
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
289.1
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
287.0
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
286.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
285.3
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
280.7
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
280.7
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
278.7
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
276.9
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
270.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
270.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
269.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
269.1
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
267.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
267.2
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
267.0
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
266.8
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
266.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
263.0
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
260.8
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
257.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
257.1
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
253.9
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
247.1
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
244.8
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
243.3
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
243.0
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
242.2
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
241.4
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
240.3
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
231.9
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
230.6
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
230.4
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
230.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
226.7
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
226.7
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
226.3
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
224.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
223.4
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
219.9
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
217.2
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
217.2
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
215.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
215.8
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
215.4
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
215.0
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
211.9
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
209.6
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
205.3
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
203.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
197.2
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
196.7
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
195.2
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
195.2
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
194.3
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
194.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
192.9
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
183.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
182.7
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
181.6
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
180.6
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
179.2
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
176.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
174.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
169.9
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
169.4
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
166.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
164.1
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
162.2
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
154.4
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
150.2
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
150.1
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
145.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
145.2
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
144.4
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
136.6
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
131.3
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
131.2
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
127.5
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
125.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
124.9
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
120.1
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
113.5
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
108.9
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
97.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.