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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SH3GL1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
134.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
93.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
73.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
70.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
68.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
65.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
65.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
64.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
62.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
58.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
57.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
57.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
55.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
55.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
55.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
55.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
53.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
52.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
51.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
50.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
50.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
49.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
49.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
49.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
48.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
48.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
47.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
46.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
45.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
45.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
44.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
44.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
44.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
44.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
44.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
43.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
42.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
42.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
41.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
41.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
41.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
41.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
41.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
41.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
40.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
40.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
40.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
40.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
39.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
39.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
39.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
39.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
39.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
39.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
38.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
38.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
37.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
37.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
37.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
36.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
36.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
36.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
36.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
35.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
35.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
35.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
35.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
35.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
35.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
34.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
34.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
34.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
34.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
33.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
33.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
32.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
32.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
32.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
32.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
32.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
32.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
32.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
31.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
31.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
31.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
31.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
31.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
31.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
30.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
30.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
30.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
30.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
30.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
30.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
30.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
30.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
30.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
29.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
29.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
29.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
29.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
29.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
28.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
28.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
28.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
28.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
28.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
28.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
28.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
28.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
28.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
28.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
28.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
27.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
27.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
27.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
27.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
27.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
27.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
27.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
27.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
27.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
27.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
26.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
26.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
26.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
26.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
26.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
26.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
26.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
26.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
26.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
26.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
26.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
25.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
25.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
25.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
25.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
25.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
25.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
25.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
25.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
25.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
25.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
25.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
25.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
24.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
24.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
24.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
24.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
24.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
24.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
24.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
24.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
23.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
23.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
23.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
23.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
23.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
23.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
23.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
23.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
23.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
23.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
23.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
23.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
23.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
22.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
22.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
22.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
22.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
22.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
22.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
22.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
22.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
22.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
21.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
21.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
21.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
21.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
21.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
21.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
21.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
21.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
21.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
20.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
20.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
20.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
20.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
20.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
19.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
19.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
19.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
19.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
18.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
18.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
18.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
18.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
18.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
17.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
17.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
16.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
15.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
12.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SH3GL1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.7
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
107.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
83.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
80.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
77.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
77.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
72.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
61.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
59.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
56.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
54.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
45.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
45.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
44.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
43.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
43.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
42.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
40.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
39.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
39.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
39.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
38.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
37.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
36.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
36.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
36.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
36.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
35.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
35.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
35.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
35.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
35.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
35.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
35.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
33.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
33.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
33.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
32.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
32.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
32.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
31.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
31.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
31.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
31.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
30.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
30.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
30.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
29.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
29.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
29.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
29.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
29.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
29.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
29.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
29.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
28.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
28.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
28.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
28.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
28.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
28.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
27.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
27.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
27.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
27.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
27.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
27.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
27.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
27.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
26.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
26.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
26.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
26.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
26.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
26.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
26.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
26.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
26.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
26.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
26.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
25.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
25.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
24.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
24.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
24.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
24.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
24.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
24.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
24.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
24.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
23.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
23.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
22.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
21.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
21.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
21.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
19.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
17.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
17.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
285
Tumor
1.4
943
Tumor
1.1
125
Tumor
1.0
283
Tumor
0.9
737
Tumor
0.8
545
Tumor
0.8
1013
Tumor
0.8
785
Tumor
0.7
953
Tumor
0.7
917
Tumor
0.6
473
Tumor
0.6
745
Tumor
0.6
881
Tumor
0.6
851
Tumor
0.6
523
Tumor
0.6
355
Tumor
0.5
536
Normal
0.5
131
Tumor
0.5
815
Tumor
0.5
513
Tumor
0.5
923
Tumor
0.5
413
Tumor
0.4
463
Tumor
0.4
375
Tumor
0.4
524
Normal
0.4
447
Tumor
0.4
277
Tumor
0.4
537
Tumor
0.4
311
Tumor
0.4
365
Tumor
0.4
492
Normal
0.4
498
Normal
0.4
697
Tumor
0.4
147
Tumor
0.4
478
Normal
0.4
958
Normal
0.4
516
Normal
0.4
331
Tumor
0.4
641
Tumor
0.4
743
Tumor
0.3
727
Tumor
0.3
965
Tumor
0.3
863
Tumor
0.3
1025
Tumor
0.3
211
Tumor
0.3
921
Tumor
0.3
363
Tumor
0.3
271
Tumor
0.3
515
Tumor
0.3
967
Tumor
0.3
877
Tumor
0.3
415
Tumor
0.3
538
Normal
0.3
952
Normal
0.3
916
Normal
0.3
695
Tumor
0.3
814
Normal
0.3
778
Normal
0.3
1031
Tumor
0.3
884
Normal
0.3
963
Tumor
0.3
968
Normal
0.3
554
Normal
0.3
553
Tumor
0.3
567
Tumor
0.2
918
Normal
0.2
1015
Tumor
0.2
983
Tumor
0.2
1028
Normal
0.2
977
Tumor
0.2
297
Tumor
0.2
455
Tumor
0.2
518
Normal
0.2
878
Normal
0.2
445
Tumor
0.2
817
Tumor
0.2
865
Tumor
0.2
938
Normal
0.2
1045
Tumor
0.2
913
Tumor
0.2
944
Normal
0.2
444
Normal
0.2
964
Normal
0.2
627
Tumor
0.2
491
Tumor
0.2
924
Normal
0.2
714
Normal
0.2
724
Normal
0.2
481
Tumor
0.2
978
Normal
0.2
696
Normal
0.2
1014
Normal
0.2
1042
Normal
0.2
474
Normal
0.2
461
Tumor
0.2
984
Normal
0.2
261
Tumor
0.2
813
Tumor
0.2
484
Normal
0.2
546
Normal
0.2
223
Tumor
0.2
882
Normal
0.2
483
Tumor
0.2
723
Tumor
0.2
955
Tumor
0.1
1026
Normal
0.1
852
Normal
0.1
367
Tumor
0.1
1032
Normal
0.1
873
Tumor
0.1
951
Tumor
0.1
467
Tumor
0.1
698
Normal
0.1
976
Normal
0.1
686
Normal
0.1
721
Tumor
0.1
212
Normal
0.1
192
Normal
0.1
975
Tumor
0.1
922
Normal
0.1
954
Normal
0.1
663
Tumor
0.1
966
Normal
0.1
1046
Normal
0.1
661
Tumor
0.1
462
Normal
0.1
412
Normal
0.1
356
Normal
0.1
1044
Normal
0.1
937
Tumor
0.1
716
Normal
0.1
145
Tumor
0.1
471
Tumor
0.1
535
Tumor
0.1
528
Normal
0.1
472
Normal
0.1
672
Normal
0.1
786
Normal
0.1
777
Tumor
0.1
493
Tumor
0.1
558
Normal
0.1
482
Normal
0.1
364
Normal
0.1
494
Normal
0.1
534
Normal
0.1
224
Normal
0.1
926
Normal
0.1
572
Normal
0.1
874
Normal
0.1
744
Normal
0.1
227
Tumor
0.1
756
Normal
0.1
956
Normal
0.1
448
Normal
0.1
912
Normal
0.1
728
Normal
0.1
526
Normal
0.1
982
Normal
0.1
525
Tumor
0.1
824
Normal
0.1
327
Tumor
0.1
313
Tumor
0.0
1016
Normal
0.0
1022
Normal
0.0
497
Tumor
0.0
514
Normal
0.0
816
Normal
0.0
742
Normal
0.0
738
Normal
0.0
434
Normal
0.0
328
Normal
0.0
142
Normal
0.0
488
Normal
0.0
866
Normal
0.0
284
Normal
0.0
126
Normal
0.0
862
Normal
0.0
818
Normal
0.0
868
Normal
0.0
286
Normal
0.0
416
Normal
0.0
557
Tumor
0.0
312
Normal
0.0
563
Tumor
0.0
857
Tumor
0.0
981
Tumor
0.0
146
Normal
0.0
124
Normal
0.0
861
Tumor
0.0
527
Tumor
0.0
141
Tumor
0.0
267
Tumor
0.0
411
Tumor
0.0
664
Normal
0.0
111
Normal
0.0
628
Normal
0.0
386
Normal
0.0
268
Normal
0.0
466
Normal
0.0
662
Normal
0.0
715
Tumor
0.0
823
Tumor
0.0
617
Tumor
0.0
746
Normal
0.0
421
Tumor
-0.1
298
Normal
-0.1
671
Tumor
-0.1
188
Normal
-0.1
136
Normal
-0.1
864
Normal
-0.1
217
Tumor
-0.1
573
Tumor
-0.1
666
Normal
-0.1
722
Normal
-0.1
911
Tumor
-0.1
1043
Tumor
-0.1
883
Tumor
-0.1
385
Tumor
-0.1
957
Tumor
-0.1
262
Normal
-0.1
433
Tumor
-0.1
352
Normal
-0.1
218
Normal
-0.1
616
Normal
-0.1
362
Normal
-0.1
148
Normal
-0.1
228
Normal
-0.1
423
Tumor
-0.1
396
Normal
-0.1
113
Tumor
-0.1
138
Normal
-0.1
568
Normal
-0.1
384
Normal
-0.1
858
Normal
-0.1
395
Tumor
-0.1
392
Normal
-0.1
436
Normal
-0.1
195
Tumor
-0.1
914
Normal
-0.1
424
Normal
-0.1
665
Tumor
-0.1
272
Normal
-0.1
137
Tumor
-0.1
368
Normal
-0.1
344
Normal
-0.1
376
Normal
-0.2
135
Tumor
-0.2
132
Normal
-0.2
713
Tumor
-0.2
214
Normal
-0.2
196
Normal
-0.2
162
Normal
-0.2
648
Normal
-0.2
332
Normal
-0.2
428
Normal
-0.2
114
Normal
-0.2
517
Tumor
-0.2
232
Normal
-0.2
422
Normal
-0.2
574
Normal
-0.2
1027
Tumor
-0.2
427
Tumor
-0.2
128
Normal
-0.2
426
Normal
-0.2
414
Normal
-0.2
464
Normal
-0.2
647
Tumor
-0.2
187
Tumor
-0.2
383
Tumor
-0.2
354
Normal
-0.2
618
Normal
-0.2
432
Normal
-0.2
366
Normal
-0.2
468
Normal
-0.2
456
Normal
-0.2
172
Normal
-0.2
357
Tumor
-0.2
258
Normal
-0.3
278
Normal
-0.3
388
Normal
-0.3
431
Tumor
-0.3
186
Normal
-0.3
642
Normal
-0.3
222
Normal
-0.3
353
Tumor
-0.3
564
Normal
-0.3
394
Normal
-0.3
615
Tumor
-0.3
314
Normal
-0.3
185
Tumor
-0.3
343
Tumor
-0.3
925
Tumor
-0.3
446
Normal
-0.3
191
Tumor
-0.3
465
Tumor
-0.3
358
Normal
-0.3
351
Tumor
-0.3
161
Tumor
-0.3
213
Tumor
-0.3
1041
Tumor
-0.3
636
Normal
-0.3
221
Tumor
-0.4
915
Tumor
-0.4
867
Tumor
-0.4
451
Tumor
-0.4
685
Tumor
-0.4
393
Tumor
-0.4
391
Tumor
-0.4
342
Normal
-0.4
571
Tumor
-0.4
1021
Tumor
-0.4
487
Tumor
-0.4
452
Normal
-0.4
257
Tumor
-0.5
533
Tumor
-0.5
477
Tumor
-0.5
361
Tumor
-0.5
425
Tumor
-0.5
231
Tumor
-0.5
387
Tumor
-0.5
171
Tumor
-0.6
443
Tumor
-0.6
127
Tumor
-0.6
741
Tumor
-0.6
341
Tumor
-0.7
435
Tumor
-0.7
755
Tumor
-0.8
112
Tumor
-0.8
123
Tumor
-0.8
635
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
