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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMC6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
141.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
106.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
88.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
64.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
63.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
59.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
58.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
57.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
52.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
49.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
49.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
48.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
47.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
46.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
39.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
39.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
38.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
36.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
34.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
33.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
33.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
32.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
30.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
29.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
27.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
26.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
25.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
25.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
25.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
24.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
24.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
23.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
22.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
21.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
20.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
20.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
19.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
19.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
19.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
17.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
15.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
14.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
5.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
3.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
3.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
1.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMC6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.4
Number of samples
231
Samples
Sample
Description
TPM
DO45277
0 years, male, NA, stage:3, alive, 600 days
71.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
60.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
40.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
37.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
37.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
37.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
33.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
32.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
32.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
32.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
31.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
30.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
29.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
28.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
27.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
26.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
25.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
20.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
19.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
3.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
2.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
2.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
2.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
192
Normal
1.3
958
Normal
1.3
1041
Tumor
1.2
975
Tumor
1.1
391
Tumor
1.0
217
Tumor
0.9
386
Normal
0.9
968
Normal
0.9
368
Normal
0.9
524
Normal
0.8
218
Normal
0.8
396
Normal
0.8
1044
Normal
0.8
222
Normal
0.7
191
Tumor
0.7
394
Normal
0.7
697
Tumor
0.7
963
Tumor
0.7
388
Normal
0.7
366
Normal
0.7
392
Normal
0.7
214
Normal
0.7
514
Normal
0.7
196
Normal
0.7
966
Normal
0.7
447
Tumor
0.7
195
Tumor
0.7
518
Normal
0.6
384
Normal
0.6
641
Tumor
0.6
573
Tumor
0.6
911
Tumor
0.6
976
Normal
0.6
395
Tumor
0.6
536
Normal
0.6
526
Normal
0.6
385
Tumor
0.6
135
Tumor
0.6
1031
Tumor
0.5
954
Normal
0.5
964
Normal
0.5
138
Normal
0.5
478
Normal
0.5
878
Normal
0.5
554
Normal
0.5
538
Normal
0.5
628
Normal
0.5
132
Normal
0.5
146
Normal
0.4
938
Normal
0.4
481
Tumor
0.4
1025
Tumor
0.4
136
Normal
0.4
525
Tumor
0.4
387
Tumor
0.4
1045
Tumor
0.4
126
Normal
0.4
142
Normal
0.4
943
Tumor
0.4
367
Tumor
0.4
361
Tumor
0.4
376
Normal
0.4
362
Normal
0.4
528
Normal
0.4
516
Normal
0.4
213
Tumor
0.4
713
Tumor
0.3
145
Tumor
0.3
951
Tumor
0.3
944
Normal
0.3
956
Normal
0.3
482
Normal
0.3
616
Normal
0.3
882
Normal
0.3
472
Normal
0.3
574
Normal
0.3
913
Tumor
0.3
364
Normal
0.3
534
Normal
0.3
914
Normal
0.3
314
Normal
0.3
311
Tumor
0.3
558
Normal
0.3
383
Tumor
0.2
571
Tumor
0.2
462
Normal
0.2
564
Normal
0.2
365
Tumor
0.2
356
Normal
0.2
1046
Normal
0.2
617
Tumor
0.2
1026
Normal
0.2
568
Normal
0.2
328
Normal
0.2
1028
Normal
0.2
572
Normal
0.2
141
Tumor
0.2
1032
Normal
0.2
1042
Normal
0.2
721
Tumor
0.2
884
Normal
0.2
416
Normal
0.2
1021
Tumor
0.1
567
Tumor
0.1
137
Tumor
0.1
877
Tumor
0.1
716
Normal
0.1
312
Normal
0.1
535
Tumor
0.1
618
Normal
0.1
434
Normal
0.1
698
Normal
0.1
221
Tumor
0.1
778
Normal
0.1
615
Tumor
0.1
533
Tumor
0.1
635
Tumor
0.1
563
Tumor
0.1
955
Tumor
0.0
557
Tumor
0.0
814
Normal
0.0
124
Normal
0.0
912
Normal
0.0
883
Tumor
0.0
375
Tumor
0.0
415
Tumor
0.0
332
Normal
0.0
1022
Normal
0.0
627
Tumor
-0.1
444
Normal
-0.1
546
Normal
-0.1
474
Normal
-0.1
448
Normal
-0.1
131
Tumor
-0.1
545
Tumor
-0.1
278
Normal
-0.1
642
Normal
-0.1
965
Tumor
-0.1
858
Normal
-0.1
443
Tumor
-0.1
756
Normal
-0.1
636
Normal
-0.1
432
Normal
-0.1
527
Tumor
-0.1
824
Normal
-0.1
513
Tumor
-0.1
818
Normal
-0.1
393
Tumor
-0.2
446
Normal
-0.2
881
Tumor
-0.2
686
Normal
-0.2
714
Normal
-0.2
952
Normal
-0.2
363
Tumor
-0.2
331
Tumor
-0.2
696
Normal
-0.3
553
Tumor
-0.3
114
Normal
-0.3
1027
Tumor
-0.3
813
Tumor
-0.3
412
Normal
-0.3
298
Normal
-0.3
436
Normal
-0.3
327
Tumor
-0.4
517
Tumor
-0.4
816
Normal
-0.4
355
Tumor
-0.4
433
Tumor
-0.4
1043
Tumor
-0.4
786
Normal
-0.4
537
Tumor
-0.4
111
Normal
-0.4
445
Tumor
-0.4
722
Normal
-0.4
817
Tumor
-0.4
957
Tumor
-0.4
715
Tumor
-0.5
515
Tumor
-0.5
852
Normal
-0.5
431
Tumor
-0.5
277
Tumor
-0.6
815
Tumor
-0.6
953
Tumor
-0.6
297
Tumor
-0.6
785
Tumor
-0.6
128
Normal
-0.6
823
Tumor
-0.7
523
Tumor
-0.7
746
Normal
-0.7
313
Tumor
-0.7
937
Tumor
-0.7
127
Tumor
-0.7
851
Tumor
-0.7
857
Tumor
-0.8
435
Tumor
-0.8
461
Tumor
-0.8
411
Tumor
-0.9
978
Normal
-0.9
471
Tumor
-0.9
113
Tumor
-0.9
755
Tumor
-0.9
984
Normal
-1.0
967
Tumor
-1.0
685
Tumor
-1.1
1016
Normal
-1.1
125
Tumor
-1.1
777
Tumor
-1.2
745
Tumor
-1.2
983
Tumor
-1.2
1014
Normal
-1.2
112
Tumor
-1.2
695
Tumor
-1.3
982
Normal
-1.3
123
Tumor
-1.6
477
Tumor
-1.7
1015
Tumor
-1.7
473
Tumor
-1.8
981
Tumor
-2.0
977
Tumor
-2.1
1013
Tumor
-2.4
351
Tumor
N/A
231
Tumor
N/A
352
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
483
Tumor
N/A
484
Normal
N/A
487
Tumor
N/A
488
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
494
Normal
N/A
497
Tumor
N/A
498
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
267
Tumor
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
737
Tumor
N/A
738
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
861
Tumor
N/A
741
Tumor
N/A
862
Normal
N/A
742
Normal
N/A
863
Tumor
N/A
743
Tumor
N/A
864
Normal
N/A
744
Normal
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
423
Tumor
N/A
665
Tumor
N/A
424
Normal
N/A
666
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
211
Tumor
N/A
212
Normal
N/A
455
Tumor
N/A
456
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
