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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
41.5
Sample id
Sample description
nTPM
Anterior thalamic nucleus, ventral nTPM: 10.5
2497
Male, age 66, unknown
14.8
2396
Male, age 61, right hemisphere
10.5
2032
Female, age 42, unknown
6.2
Centromedial thalamic nucleus nTPM: 6.2
2401
Male, age 76, right hemisphere
11.7
2279
Female, age 85, left hemisphere
0.7
Habenula nTPM: 41.5
2203
Male, age 61, left hemisphere
55.3
1957
Male, age 80, both hemispheres
52.7
2276
Male, age 66, unknown
41.7
2252
Male, age 62, unknown
16.4
Lateral geniculate body nTPM: 4.3
1953
Male, age 62, unknown
11.7
2106
Female, age 67, right hemisphere
6.3
2857
Male, age 74, right hemisphere
3.6
2575
Female, age 94, right hemisphere
3.2
2399
Male, age 61, left hemisphere
2.8
2659
Male, age 66, unknown
2.7
2841
Male, age 80, both hemispheres
2.6
2035
Female, age 72, unknown
1.8
Lateral thalamic nuclei nTPM: 9.2
1903
Male, age 76, left hemisphere
30.8
2765
Female, age 67, both hemispheres
4.5
2661
Female, age 72, unknown
4.4
2577
Male, age 74, both hemispheres
3.2
2573
Female, age 94, left hemisphere
2.8
Medial dorsal thalamic nucleus nTPM: 18.1
2498
Male, age 66, unknown
54.8
2026
Male, age 62, unknown
31.6
2039
Female, age 72, unknown
27.1
1971
Male, age 61, right hemisphere
25.1
1930
Female, age 42, unknown
24.0
2283
Male, age 80, right hemisphere
17.8
1859
Male, age 76, both hemispheres
9.6
2660
Female, age 72, unknown
9.1
2402
Female, age 67, both hemispheres
8.6
2492
Male, age 75, right hemisphere
7.6
1810
Male, age 48, unknown
7.5
2576
Male, age 74, both hemispheres
7.1
2572
Female, age 94, right hemisphere
4.8
Medial geniculate body nTPM: 8.4
1811
Female, age 42, unknown
18.6
2207
Male, age 80, right hemisphere
17.2
2049
Male, age 76, both hemispheres
6.1
2657
Male, age 74, right hemisphere
4.7
2217
Female, age 72, unknown
4.4
2650
Female, age 94, left hemisphere
3.9
2571
Male, age 75, right hemisphere
3.6
Nucleus reuniens nTPM: 12.7
2205
Male, age 80, left hemisphere
19.4
2212
Female, age 67, left hemisphere
17.9
2210
Female, age 85, left hemisphere
0.8
Nucleus rhomboideus nTPM: 10.4
2206
Male, age 80, both hemispheres
26.6
2213
Female, age 67, left hemisphere
3.9
2280
Female, age 85, left hemisphere
0.8
Posterior thalamic nucleus nTPM: 8.2
2495
Female, age 67, right hemisphere
15.6
2266
Male, age 76, right hemisphere
8.0
2655
Male, age 74, right hemisphere
4.8
2649
Female, age 94, both hemispheres
4.4
Pulvinar nTPM: 8.8
1972
Male, age 62, unknown
16.6
2214
Male, age 76, right hemisphere
13.6
1929
Male, age 48, unknown
12.1
2582
Female, age 72, unknown
10.7
1899
Female, age 42, unknown
10.1
2496
Female, age 67, right hemisphere
6.9
2499
Male, age 66, unknown
5.8
1932
Male, age 80, right hemisphere
4.3
2398
Male, age 61, left hemisphere
3.7
2724
Male, age 74, right hemisphere
3.7
Subthalamic nucleus nTPM: 8.1
2779
Female, age 42, unknown
18.6
2406
Female, age 72, unknown
11.0
2216
Male, age 48, unknown
8.0
2658
Male, age 74, both hemispheres
7.2
2282
Male, age 61, both hemispheres
6.9
2056
Female, age 72, unknown
6.3
2275
Male, age 66, unknown
4.8
2124
Male, age 62, unknown
1.8
Ventral posterolateral thalamic nucleus nTPM: 3.6
2197
Male, age 80, both hemispheres
9.0
2740
Male, age 76, right hemisphere
3.5
2581
Female, age 72, unknown
2.7
2578
Male, age 74, both hemispheres
2.6
2397
Male, age 61, right hemisphere
2.2
2570
Male, age 75, right hemisphere
1.8
Ventral posteromedial thalamic nucleus nTPM: 9.2
2127
Male, age 76, right hemisphere
23.6
2758
Male, age 80, both hemispheres
11.2
2202
Male, age 61, left hemisphere
6.2
2653
Male, age 74, both hemispheres
3.0
2281
Male, age 75, right hemisphere
1.8
Ventral thalamic nuclei nTPM: 9.1
1912
Female, age 42, unknown
26.1
2291
Female, age 72, unknown
13.4
2204
Male, age 80, both hemispheres
11.7
2285
Male, age 62, unknown
9.1
1845
Male, age 48, unknown
7.6
1860
Male, age 76, both hemispheres
5.0
2580
Male, age 66, unknown
3.3
2652
Male, age 74, left hemisphere
3.1
2858
Female, age 72, unknown
2.3
Zona incerta nTPM: 14.1
2663
Female, age 72, unknown
37.4
2208
Male, age 80, right hemisphere
19.9
2215
Male, age 66, unknown
5.0
2822
Male, age 74, right hemisphere
4.7
2403
Male, age 62, unknown
3.6
THALAMUS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.2
Mouse sample
Sample description
nTPM
Thalamus nTPM: 21.2
Samples: 4
Max nTPM: 26.1
Min nTPM: 18.0
Sample A
Male
18.2
Sample B
Male
22.4
Sample C
Female
18.0
Sample D
Female
26.1
THALAMUS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
