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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC39A6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
73.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
65.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
57.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
57.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
53.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
48.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
45.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
42.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
38.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
35.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
34.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
34.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
34.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
33.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
33.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
31.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
29.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
26.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
25.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
25.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
25.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
16.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
2.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC39A6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.6
Number of samples
231
Samples
Sample
Description
TPM
DO45205
0 years, female, NA, stage:2, dead, 90 days
42.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
42.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
39.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
35.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
35.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
34.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
33.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
32.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
31.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
30.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
30.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
29.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
29.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
26.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
26.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
24.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
23.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
20.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
3.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
777
Tumor
1.7
332
Normal
1.5
813
Tumor
1.3
857
Tumor
1.2
387
Tumor
1.2
314
Normal
1.2
391
Tumor
1.1
823
Tumor
1.1
817
Tumor
1.1
392
Normal
1.1
298
Normal
1.1
814
Normal
1.0
278
Normal
1.0
257
Tumor
1.0
231
Tumor
0.9
491
Tumor
0.9
211
Tumor
0.9
394
Normal
0.8
473
Tumor
0.8
312
Normal
0.7
268
Normal
0.7
443
Tumor
0.7
943
Tumor
0.7
567
Tumor
0.6
545
Tumor
0.6
963
Tumor
0.6
671
Tumor
0.6
267
Tumor
0.6
385
Tumor
0.6
815
Tumor
0.5
635
Tumor
0.5
724
Normal
0.5
743
Tumor
0.5
487
Tumor
0.5
661
Tumor
0.5
283
Tumor
0.5
573
Tumor
0.5
647
Tumor
0.5
396
Normal
0.5
852
Normal
0.5
271
Tumor
0.5
665
Tumor
0.5
223
Tumor
0.4
285
Tumor
0.4
851
Tumor
0.4
478
Normal
0.4
975
Tumor
0.4
663
Tumor
0.4
497
Tumor
0.4
258
Normal
0.4
431
Tumor
0.3
395
Tumor
0.3
386
Normal
0.3
388
Normal
0.3
444
Normal
0.3
471
Tumor
0.3
498
Normal
0.3
261
Tumor
0.3
666
Normal
0.3
262
Normal
0.3
533
Tumor
0.2
461
Tumor
0.2
967
Tumor
0.2
492
Normal
0.2
976
Normal
0.2
534
Normal
0.2
493
Tumor
0.2
433
Tumor
0.2
563
Tumor
0.2
944
Normal
0.2
664
Normal
0.2
393
Tumor
0.1
272
Normal
0.1
956
Normal
0.1
472
Normal
0.1
662
Normal
0.1
954
Normal
0.1
737
Tumor
0.1
432
Normal
0.1
618
Normal
0.1
723
Tumor
0.1
755
Tumor
0.1
672
Normal
0.1
648
Normal
0.1
742
Normal
0.1
965
Tumor
0.1
546
Normal
0.1
557
Tumor
0.0
938
Normal
0.0
756
Normal
0.0
483
Tumor
0.0
642
Normal
0.0
232
Normal
0.0
445
Tumor
0.0
628
Normal
0.0
538
Normal
0.0
527
Tumor
0.0
741
Tumor
0.0
528
Normal
0.0
786
Normal
0.0
785
Tumor
0.0
434
Normal
-0.1
488
Normal
-0.1
778
Normal
-0.1
636
Normal
-0.1
553
Tumor
-0.1
968
Normal
-0.1
228
Normal
-0.1
554
Normal
-0.1
627
Tumor
-0.1
224
Normal
-0.1
227
Tumor
-0.1
641
Tumor
-0.1
728
Normal
-0.1
617
Tumor
-0.1
574
Normal
-0.1
446
Normal
-0.1
615
Tumor
-0.1
462
Normal
-0.1
474
Normal
-0.1
616
Normal
-0.2
564
Normal
-0.2
482
Normal
-0.2
738
Normal
-0.2
558
Normal
-0.2
816
Normal
-0.2
966
Normal
-0.2
744
Normal
-0.2
957
Tumor
-0.2
952
Normal
-0.2
481
Tumor
-0.2
212
Normal
-0.2
953
Tumor
-0.2
494
Normal
-0.2
958
Normal
-0.3
964
Normal
-0.3
436
Normal
-0.3
824
Normal
-0.3
818
Normal
-0.3
477
Tumor
-0.3
745
Tumor
-0.3
435
Tumor
-0.4
937
Tumor
-0.4
951
Tumor
-0.4
955
Tumor
-0.4
572
Normal
-0.4
568
Normal
-0.5
284
Normal
-0.5
727
Tumor
-0.5
746
Normal
-0.6
858
Normal
-0.6
484
Normal
-0.6
286
Normal
-0.6
571
Tumor
-0.6
537
Tumor
-0.8
313
Tumor
-1.9
297
Tumor
-2.2
277
Tumor
-4.2
331
Tumor
-4.4
311
Tumor
-4.8
351
Tumor
N/A
352
Normal
N/A
111
Normal
N/A
353
Tumor
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
125
Tumor
N/A
367
Tumor
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
141
Tumor
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
722
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
977
Tumor
N/A
978
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
862
Normal
N/A
983
Tumor
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
864
Normal
N/A
1045
Tumor
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
514
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
535
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
416
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
447
Tumor
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
341
Tumor
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
344
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
