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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRPSAP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
48.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
34.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
32.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
30.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
25.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
23.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
23.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
21.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
21.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
21.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
20.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
20.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
17.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRPSAP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.3
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
42.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
34.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
24.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
16.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
392
Normal
1.1
466
Normal
0.9
777
Tumor
0.8
394
Normal
0.8
685
Tumor
0.8
172
Normal
0.7
147
Tumor
0.6
647
Tumor
0.6
436
Normal
0.6
818
Normal
0.5
627
Tumor
0.5
723
Tumor
0.5
922
Normal
0.5
1046
Normal
0.5
1026
Normal
0.5
714
Normal
0.5
1043
Tumor
0.5
824
Normal
0.5
862
Normal
0.5
742
Normal
0.5
1022
Normal
0.4
131
Tumor
0.4
746
Normal
0.4
952
Normal
0.4
298
Normal
0.4
342
Normal
0.4
1013
Tumor
0.4
186
Normal
0.4
912
Normal
0.4
882
Normal
0.4
426
Normal
0.4
432
Normal
0.4
695
Tumor
0.4
162
Normal
0.4
464
Normal
0.4
738
Normal
0.4
756
Normal
0.4
414
Normal
0.4
618
Normal
0.4
924
Normal
0.4
111
Normal
0.4
127
Tumor
0.4
528
Normal
0.4
698
Normal
0.3
616
Normal
0.3
123
Tumor
0.3
482
Normal
0.3
448
Normal
0.3
722
Normal
0.3
148
Normal
0.3
816
Normal
0.3
926
Normal
0.3
222
Normal
0.3
424
Normal
0.3
964
Normal
0.3
132
Normal
0.3
141
Tumor
0.3
727
Tumor
0.3
615
Tumor
0.3
866
Normal
0.3
472
Normal
0.3
128
Normal
0.3
858
Normal
0.3
778
Normal
0.3
146
Normal
0.3
716
Normal
0.3
1044
Normal
0.3
648
Normal
0.3
864
Normal
0.3
456
Normal
0.3
728
Normal
0.3
745
Tumor
0.3
358
Normal
0.3
196
Normal
0.3
435
Tumor
0.3
314
Normal
0.3
351
Tumor
0.3
884
Normal
0.3
428
Normal
0.3
534
Normal
0.2
786
Normal
0.2
663
Tumor
0.2
664
Normal
0.2
422
Normal
0.2
366
Normal
0.2
868
Normal
0.2
956
Normal
0.2
546
Normal
0.2
944
Normal
0.2
136
Normal
0.2
412
Normal
0.2
1016
Normal
0.2
666
Normal
0.2
518
Normal
0.2
938
Normal
0.2
376
Normal
0.2
356
Normal
0.2
354
Normal
0.2
484
Normal
0.2
966
Normal
0.2
878
Normal
0.2
446
Normal
0.2
462
Normal
0.2
978
Normal
0.2
863
Tumor
0.2
696
Normal
0.2
114
Normal
0.2
364
Normal
0.2
715
Tumor
0.2
918
Normal
0.2
386
Normal
0.2
286
Normal
0.2
514
Normal
0.2
1032
Normal
0.2
955
Tumor
0.2
228
Normal
0.2
416
Normal
0.2
852
Normal
0.2
218
Normal
0.2
874
Normal
0.2
312
Normal
0.2
724
Normal
0.2
744
Normal
0.2
488
Normal
0.2
628
Normal
0.2
982
Normal
0.2
737
Tumor
0.1
474
Normal
0.1
1014
Normal
0.1
328
Normal
0.1
443
Tumor
0.1
434
Normal
0.1
1042
Normal
0.1
138
Normal
0.1
142
Normal
0.1
272
Normal
0.1
914
Normal
0.1
278
Normal
0.1
124
Normal
0.1
515
Tumor
0.1
662
Normal
0.1
327
Tumor
0.1
452
Normal
0.1
126
Normal
0.1
642
Normal
0.1
568
Normal
0.1
572
Normal
0.1
558
Normal
0.1
258
Normal
0.1
564
Normal
0.1
362
Normal
0.1
368
Normal
0.1
815
Tumor
0.1
388
Normal
0.1
344
Normal
0.1
341
Tumor
0.1
411
Tumor
0.1
516
Normal
0.1
214
Normal
0.1
554
Normal
0.1
636
Normal
0.1
262
Normal
0.1
968
Normal
0.1
981
Tumor
0.1
332
Normal
0.1
112
Tumor
0.1
873
Tumor
0.1
365
Tumor
0.1
232
Normal
0.1
352
Normal
0.1
686
Normal
0.1
188
Normal
0.1
192
Normal
0.1
224
Normal
0.1
958
Normal
0.1
231
Tumor
0.0
526
Normal
0.0
916
Normal
0.0
468
Normal
0.0
113
Tumor
0.0
1027
Tumor
0.0
284
Normal
0.0
1028
Normal
0.0
976
Normal
0.0
313
Tumor
0.0
755
Tumor
0.0
396
Normal
0.0
494
Normal
0.0
741
Tumor
0.0
283
Tumor
0.0
574
Normal
0.0
212
Normal
0.0
477
Tumor
0.0
433
Tumor
0.0
814
Normal
0.0
672
Normal
0.0
954
Normal
0.0
984
Normal
0.0
277
Tumor
0.0
813
Tumor
0.0
533
Tumor
0.0
137
Tumor
-0.1
285
Tumor
-0.1
857
Tumor
-0.1
721
Tumor
-0.1
465
Tumor
-0.1
217
Tumor
-0.1
423
Tumor
-0.1
915
Tumor
-0.1
953
Tumor
-0.1
268
Normal
-0.1
917
Tumor
-0.1
481
Tumor
-0.1
384
Normal
-0.1
617
Tumor
-0.1
161
Tumor
-0.1
261
Tumor
-0.1
487
Tumor
-0.1
451
Tumor
-0.1
393
Tumor
-0.1
571
Tumor
-0.1
865
Tumor
-0.1
353
Tumor
-0.1
447
Tumor
-0.2
671
Tumor
-0.2
221
Tumor
-0.2
478
Normal
-0.2
444
Normal
-0.2
195
Tumor
-0.2
641
Tumor
-0.2
1031
Tumor
-0.2
513
Tumor
-0.2
536
Normal
-0.2
421
Tumor
-0.2
425
Tumor
-0.2
361
Tumor
-0.2
538
Normal
-0.2
921
Tumor
-0.2
523
Tumor
-0.2
445
Tumor
-0.2
524
Normal
-0.2
957
Tumor
-0.2
355
Tumor
-0.2
1021
Tumor
-0.2
391
Tumor
-0.3
415
Tumor
-0.3
498
Normal
-0.3
267
Tumor
-0.3
525
Tumor
-0.3
697
Tumor
-0.3
375
Tumor
-0.3
1045
Tumor
-0.3
977
Tumor
-0.3
573
Tumor
-0.3
867
Tumor
-0.3
877
Tumor
-0.3
145
Tumor
-0.3
357
Tumor
-0.3
427
Tumor
-0.3
1015
Tumor
-0.3
461
Tumor
-0.3
567
Tumor
-0.3
943
Tumor
-0.3
191
Tumor
-0.3
557
Tumor
-0.4
227
Tumor
-0.4
713
Tumor
-0.4
492
Normal
-0.4
553
Tumor
-0.4
851
Tumor
-0.4
211
Tumor
-0.4
1025
Tumor
-0.4
517
Tumor
-0.4
363
Tumor
-0.4
665
Tumor
-0.4
493
Tumor
-0.4
635
Tumor
-0.4
463
Tumor
-0.4
967
Tumor
-0.4
661
Tumor
-0.4
413
Tumor
-0.4
785
Tumor
-0.4
185
Tumor
-0.4
963
Tumor
-0.4
975
Tumor
-0.4
545
Tumor
-0.4
467
Tumor
-0.4
343
Tumor
-0.4
527
Tumor
-0.4
937
Tumor
-0.4
861
Tumor
-0.5
537
Tumor
-0.5
213
Tumor
-0.5
135
Tumor
-0.5
257
Tumor
-0.5
563
Tumor
-0.5
925
Tumor
-0.5
271
Tumor
-0.5
491
Tumor
-0.5
923
Tumor
-0.5
823
Tumor
-0.5
331
Tumor
-0.5
311
Tumor
-0.5
911
Tumor
-0.5
881
Tumor
-0.5
983
Tumor
-0.6
817
Tumor
-0.6
187
Tumor
-0.6
223
Tumor
-0.6
743
Tumor
-0.6
387
Tumor
-0.6
171
Tumor
-0.6
297
Tumor
-0.6
965
Tumor
-0.6
883
Tumor
-0.6
125
Tumor
-0.6
497
Tumor
-0.6
383
Tumor
-0.6
367
Tumor
-0.6
951
Tumor
-0.6
913
Tumor
-0.7
455
Tumor
-0.7
471
Tumor
-0.7
473
Tumor
-0.7
395
Tumor
-0.8
385
Tumor
-0.8
483
Tumor
-0.8
535
Tumor
-0.9
1041
Tumor
-1.0
431
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
