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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DEF8 is not prognostic in Kidney Chromophobe (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.0
Number of samples
64
Samples
Sample
Description
TPM
TCGA-KN-8423-01A
0 years, male, white, stage:Stage I, alive, 788 days
82.8
TCGA-KN-8426-01A
0 years, male, white, stage:Stage IV, alive, 108 days
65.8
TCGA-KN-8421-01A
0 years, female, white, stage:Stage II, alive, 2674 days
63.6
TCGA-KO-8414-01A
0 years, female, white, stage:Stage II, alive, 3212 days
61.4
TCGA-KO-8415-01A
0 years, female, white, stage:Stage I, alive, 2939 days
54.3
TCGA-KL-8325-01A
0 years, female, white, stage:Stage II, dead, 725 days
54.1
TCGA-KN-8424-01A
0 years, female, white, stage:Stage I, alive, 1983 days
52.8
TCGA-KL-8323-01A
0 years, female, white, stage:Stage III, dead, 1158 days
51.5
TCGA-KL-8324-01A
0 years, female, white, stage:Stage II, alive, 4676 days
51.3
TCGA-KL-8346-01A
0 years, male, white, stage:Stage II, alive, 1897 days
50.9
TCGA-KL-8330-01A
0 years, female, black or african american, stage:Stage II, alive, 3304 days
50.8
TCGA-KN-8434-01A
0 years, female, white, stage:Stage II, alive, 1797 days
49.1
TCGA-KO-8417-01A
0 years, female, white, stage:Stage I, alive, 2815 days
48.2
TCGA-KL-8329-01A
0 years, female, asian, stage:Stage I, alive, 2752 days
47.7
TCGA-KM-8440-01A
0 years, male, black or african american, stage:Stage III, alive, 1366 days
47.3
TCGA-KN-8433-01A
0 years, female, white, stage:Stage III, alive, 341 days
47.1
TCGA-KN-8429-01A
0 years, female, white, stage:Stage III, alive, 2650 days
46.4
TCGA-KL-8331-01A
0 years, female, white, stage:Stage II, alive, 3010 days
46.3
TCGA-KL-8334-01A
0 years, female, white, stage:Stage III, alive, 2949 days
45.5
TCGA-KO-8413-01A
0 years, male, white, stage:Stage I, alive, 3038 days
44.1
TCGA-KL-8332-01A
0 years, male, white, stage:Stage I, alive, 2582 days
44.0
TCGA-KN-8425-01A
0 years, male, white, stage:Stage I, alive, 3179 days
42.6
TCGA-KN-8435-01A
0 years, male, white, stage:Stage II, alive, 3498 days
42.6
TCGA-KO-8406-01A
0 years, female, white, stage:Stage I, alive, 3145 days
40.4
TCGA-KL-8340-01A
0 years, male, white, stage:Stage II, alive, 2024 days
39.2
TCGA-KN-8418-01A
0 years, female, white, stage:Stage II, alive, 3935 days
38.5
TCGA-KO-8405-01A
0 years, male, white, stage:Stage III, alive, 3056 days
37.8
TCGA-KO-8410-01A
0 years, female, white, stage:Stage I, alive, 3136 days
36.6
TCGA-KN-8427-01A
0 years, male, white, stage:Stage IV, alive, 30 days
36.1
TCGA-KL-8341-01A
0 years, male, asian, stage:Stage IV, dead, 754 days
35.8
TCGA-KN-8432-01A
0 years, female, white, stage:Stage II, alive, 76 days
35.7
TCGA-KN-8431-01A
0 years, female, stage:Stage II, alive, 588 days
35.6
TCGA-KM-8442-01A
0 years, male, stage:Stage II, alive, 1437 days
35.2
TCGA-KL-8337-01A
0 years, male, black or african american, stage:Stage II, alive, 1364 days
34.5
TCGA-KN-8436-01A
0 years, male, white, stage:Stage II, alive, 1288 days
33.9
TCGA-KO-8407-01A
0 years, male, white, stage:Stage II, alive, 2820 days
33.7
TCGA-KL-8344-01A
0 years, male, white, stage:Stage III, alive, 876 days
32.2
TCGA-KL-8335-01A
0 years, male, white, stage:Stage III, alive, 2815 days
31.8
TCGA-KL-8342-01A
0 years, female, white, stage:Stage II, alive, 2248 days
31.8
TCGA-KM-8443-01A
0 years, male, white, stage:Stage II, alive, 1520 days
30.5
TCGA-KM-8639-01A
0 years, male, white, stage:Stage I, alive, 953 days
30.2
TCGA-KL-8328-01A
0 years, male, white, stage:Stage II, alive, 3127 days
29.0
TCGA-KL-8345-01A
0 years, male, white, stage:Stage III, alive, 1665 days
28.0
TCGA-KM-8438-01A
0 years, female, white, stage:Stage II, alive, 4622 days
27.1
TCGA-KM-8476-01A
0 years, male, white, stage:Stage I, alive, 3745 days
25.7
TCGA-KM-8439-01A
0 years, male, white, stage:Stage I, alive, 708 days
25.2
TCGA-KO-8409-01A
0 years, male, white, stage:Stage II, alive, 3180 days
24.7
TCGA-KO-8416-01A
0 years, male, white, stage:Stage III, alive, 2752 days
24.5
TCGA-KO-8408-01A
0 years, male, white, stage:Stage III, dead, 507 days
24.0
TCGA-KL-8343-01A
0 years, male, white, stage:Stage III, dead, 2172 days
23.4
TCGA-KL-8333-01A
0 years, male, white, stage:Stage II, alive, 2991 days
23.4
TCGA-KM-8441-01A
0 years, female, white, stage:Stage I, alive, 876 days
23.1
TCGA-KO-8404-01A
0 years, male, white, stage:Stage IV, dead, 325 days
22.5
TCGA-KL-8326-01A
0 years, male, white, stage:Stage III, alive, 3322 days
22.2
TCGA-KL-8339-01A
0 years, male, white, stage:Stage IV, dead, 855 days
22.0
TCGA-KN-8437-01A
0 years, female, white, stage:Stage I, alive, 3068 days
22.0
TCGA-KL-8336-01A
0 years, female, white, stage:Stage IV, dead, 920 days
21.5
TCGA-KN-8419-01A
0 years, male, black or african american, stage:Stage II, alive, 714 days
21.2
TCGA-KO-8403-01A
0 years, male, white, stage:Stage I, alive, 3208 days
18.7
TCGA-KM-8477-01A
0 years, male, white, stage:Stage I, alive, 1553 days
17.5
TCGA-KL-8338-01A
0 years, male, white, stage:Stage III, alive, 2633 days
16.6
TCGA-KO-8411-01A
0 years, male, white, stage:Stage I, alive, 3958 days
13.8
TCGA-KL-8327-01A
0 years, female, white, stage:Stage I, alive, 4169 days
12.5
TCGA-KN-8428-01A
0 years, male, white, stage:Stage II, dead, 1590 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DEF8 is not prognostic in Kidney Renal Clear Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.7
Number of samples
521
Samples
Sample
Description
TPM
TCGA-AK-3447-01A
0 years, male, white, stage:Stage II, alive, 1217 days
61.1
TCGA-T7-A92I-01A
0 years, female, black or african american, stage:Stage I, alive, 356 days
57.7
TCGA-DV-A4VX-01A
0 years, male, black or african american, stage:Stage IV, dead, 1626 days
54.3
TCGA-BP-4174-01A
0 years, male, white, stage:Stage II, alive, 1879 days
49.4
TCGA-B0-5098-01A
0 years, female, black or african american, stage:Stage I, dead, 1584 days
46.2
TCGA-BP-4331-01A
0 years, male, white, stage:Stage I, dead, 2454 days
43.1
TCGA-AK-3427-01A
0 years, male, white, stage:Stage I, alive, 3583 days
43.1
TCGA-B0-5707-01A
0 years, female, white, stage:Stage I, alive, 3744 days
42.5
TCGA-B0-4699-01A
0 years, male, white, stage:Stage IV, dead, 110 days
41.8
TCGA-AK-3451-01A
0 years, male, white, stage:Stage II, alive, 2868 days
41.6
TCGA-CZ-4859-01A
0 years, female, white, stage:Stage I, alive, 1787 days
40.5
TCGA-B0-5701-01A
0 years, male, white, stage:Stage III, alive, 2461 days
40.4
TCGA-A3-3346-01A
0 years, male, white, stage:Stage I, dead, 137 days
40.2
TCGA-B0-4821-01A
0 years, female, asian, stage:Stage III, dead, 1230 days
39.5
TCGA-A3-A8CQ-01A
0 years, female, black or african american, stage:Stage I, alive, 3 days
38.6
TCGA-B0-4698-01A
0 years, male, white, stage:Stage IV, dead, 42 days
38.6
TCGA-B0-5697-01A
0 years, male, white, stage:Stage I, alive, 2630 days
38.2
TCGA-B0-4688-01A
0 years, male, white, stage:Stage IV, dead, 101 days
36.9
TCGA-GK-A6C7-01A
0 years, female, black or african american, stage:Stage I, alive, 61 days
36.9
TCGA-B0-5400-01A
0 years, female, white, stage:Stage III, alive, 1733 days
36.8
TCGA-BP-4782-01A
0 years, female, white, stage:Stage I, alive, 354 days
36.3
TCGA-AK-3455-01A
0 years, female, white, stage:Stage III, dead, 683 days
36.1
TCGA-B0-4696-01A
0 years, male, white, stage:Stage III, dead, 866 days
36.1
TCGA-B8-4621-01A
0 years, male, black or african american, stage:Stage I, alive, 788 days
36.0
TCGA-CJ-4876-01A
0 years, male, white, stage:Stage II, alive, 1955 days
35.1
TCGA-CZ-5456-01A
0 years, male, white, stage:Stage II, alive, 2422 days
35.1
TCGA-B2-A4SR-01A
0 years, male, black or african american, stage:Stage II, alive, 507 days
34.7
TCGA-AK-3450-01A
0 years, female, white, stage:Stage I, alive, 1508 days
34.6
TCGA-AS-3778-01A
0 years, male, white, stage:Stage I, alive, 43 days
34.5
TCGA-B8-A8YJ-01A
0 years, female, black or african american, stage:Stage I, alive, 431 days
34.5
TCGA-A3-A6NI-01A
0 years, male, black or african american, stage:Stage I, alive, 1018 days
34.2
TCGA-B8-5546-01A
0 years, female, black or african american, stage:Stage I, alive, 505 days
34.1
TCGA-EU-5907-01A
0 years, male, white, stage:Stage III, alive, 127 days
33.7
TCGA-CJ-5680-01A
0 years, female, white, stage:Stage IV, dead, 768 days
33.7
TCGA-CJ-5675-01A
0 years, male, white, stage:Stage II, alive, 3936 days
33.3
TCGA-B2-5636-01A
0 years, male, white, stage:Stage I, alive, 919 days
33.3
TCGA-B0-4712-01A
0 years, male, white, stage:Stage IV, dead, 1337 days
33.2
TCGA-CW-5591-01A
0 years, male, white, stage:Stage IV, alive, 2271 days
33.2
TCGA-BP-4775-01A
0 years, female, white, stage:Stage I, alive, 1843 days
32.9
TCGA-AK-3433-01A
0 years, female, white, stage:Stage II, alive, 3409 days
32.9
TCGA-CW-5581-01A
0 years, male, white, stage:Stage I, alive, 2799 days
32.9
TCGA-AK-3425-01A
0 years, male, white, stage:Stage I, alive, 3343 days
32.8
TCGA-B8-A54E-01A
0 years, female, black or african american, stage:Stage I, alive, 909 days
32.7
TCGA-A3-A6NJ-01A
0 years, female, black or african american, stage:Stage I, alive, 468 days
32.3
TCGA-CJ-5677-01A
0 years, female, white, stage:Stage IV, dead, 782 days
32.0
TCGA-A3-3328-01A
0 years, male, white, stage:Stage I, alive, 1385 days
32.0
TCGA-B8-A54J-01A
0 years, male, black or african american, stage:Stage II, alive, 528 days
31.9
TCGA-B2-3923-01A
0 years, male, white, stage:Stage II, alive, 992 days
31.9
TCGA-A3-3358-01A
0 years, female, white, stage:Stage I, alive, 1307 days
31.7
TCGA-BP-4994-01A
0 years, male, white, stage:Stage I, alive, 1308 days
31.6
TCGA-3Z-A93Z-01A
0 years, male, black or african american, stage:Stage I, alive, 385 days
31.4
TCGA-CJ-4868-01A
0 years, male, white, stage:Stage IV, dead, 646 days
31.3
TCGA-CZ-4866-01A
0 years, female, white, stage:Stage I, alive, 3267 days
31.2
TCGA-B0-4694-01A
0 years, male, white, stage:Stage III, dead, 106 days
31.1
TCGA-BP-4974-01A
0 years, male, white, stage:Stage IV, dead, 211 days
31.1
TCGA-B0-5690-01A
0 years, female, white, stage:Stage I, alive, 3392 days
31.1
TCGA-A3-3376-01A
0 years, male, black or african american, stage:Stage I, dead, 1696 days
31.1
TCGA-B8-A54H-01A
0 years, female, black or african american, stage:Stage II, alive, 256 days
30.9
TCGA-CW-6088-01A
0 years, male, white, stage:Stage I, alive, 3222 days
30.7
TCGA-A3-A8OW-01A
0 years, male, black or african american, stage:Stage III, alive, 323 days
30.6
TCGA-MM-A563-01A
0 years, male, black or african american, stage:'--, alive, 591 days
30.5
TCGA-A3-3378-01A
0 years, male, white, stage:Stage I, alive, 630 days
30.4
TCGA-AK-3461-01A
0 years, male, white, stage:Stage I, alive, 2217 days
30.3
TCGA-B2-4102-01A
0 years, male, white, stage:Stage I, alive, 952 days
30.2
TCGA-A3-3370-01A
0 years, female, white, stage:Stage I, alive, 2274 days
30.1
TCGA-B8-5553-01A
0 years, female, white, stage:Stage I, alive, 435 days
30.0
TCGA-B0-5691-01A
0 years, female, white, stage:Stage I, alive, 3431 days
30.0
TCGA-AK-3458-01A
0 years, male, white, stage:Stage I, alive, 1168 days
29.9
TCGA-BP-4986-01A
0 years, male, white, stage:Stage I, alive, 785 days
29.8
TCGA-CW-5584-01A
0 years, male, white, stage:Stage III, dead, 164 days
29.7
TCGA-CJ-5679-01A
0 years, male, white, stage:Stage III, dead, 679 days
29.7
TCGA-B8-4148-01A
0 years, female, white, stage:Stage I, alive, 1520 days
29.6
TCGA-BP-5199-01A
0 years, male, white, stage:Stage II, alive, 1355 days
29.6
TCGA-A3-3319-01A
0 years, male, white, stage:Stage I, alive, 1130 days
29.4
TCGA-CJ-4871-01A
0 years, male, white, stage:Stage IV, alive, 2423 days
29.3
TCGA-B4-5377-01A
0 years, female, white, stage:Stage IV, alive, 365 days
29.2
TCGA-B2-5641-01A
0 years, male, white, stage:Stage I, alive, 656 days
29.1
TCGA-B0-5696-01A
0 years, male, white, stage:Stage III, alive, 2609 days
29.0
TCGA-BP-4325-01A
0 years, female, white, stage:Stage I, alive, 2964 days
29.0
TCGA-CJ-6027-01A
0 years, male, white, stage:Stage I, dead, 3615 days
29.0
TCGA-BP-4162-01A
0 years, female, white, stage:Stage I, alive, 3074 days
29.0
TCGA-CJ-4892-01A
0 years, female, white, stage:Stage I, alive, 1521 days
29.0
TCGA-DV-5566-01A
0 years, female, white, stage:Stage I, alive, 1398 days
29.0
TCGA-CZ-4863-01A
0 years, female, white, stage:Stage III, alive, 1928 days
28.9
TCGA-BP-4995-01A
0 years, male, white, stage:Stage I, alive, 1371 days
28.9
TCGA-CJ-5672-01A
0 years, male, white, stage:Stage I, dead, 1972 days
28.8
TCGA-BP-4340-01A
0 years, female, white, stage:Stage I, dead, 562 days
28.7
TCGA-MM-A84U-01A
0 years, female, black or african american, stage:Stage I, alive, 700 days
28.6
TCGA-MW-A4EC-01A
0 years, female, black or african american, stage:Stage I, alive, 498 days
28.6
TCGA-B0-4848-01A
0 years, male, white, stage:Stage III, dead, 883 days
28.6
TCGA-B2-5633-01A
0 years, male, white, stage:Stage I, alive, 963 days
28.5
TCGA-A3-3362-01A
0 years, female, white, stage:Stage I, alive, 1559 days
28.5
TCGA-A3-A6NL-01A
0 years, female, black or african american, stage:Stage I, alive, 689 days
28.5
TCGA-A3-3308-01A
0 years, female, white, stage:Stage III, alive, 16 days
28.4
TCGA-B8-5550-01A
0 years, male, white, stage:Stage III, alive, 1476 days
28.4
TCGA-B0-5107-01A
0 years, female, white, stage:Stage IV, dead, 927 days
28.4
TCGA-BP-4352-01A
0 years, female, white, stage:Stage IV, dead, 344 days
28.3
TCGA-BP-4334-01A
0 years, male, white, stage:Stage III, dead, 645 days
28.3
TCGA-EU-5906-01A
0 years, male, white, stage:Stage I, alive, 206 days
28.3
TCGA-B8-A7U6-01A
0 years, female, black or african american, stage:Stage I, alive, 495 days
28.3
TCGA-B0-4844-01A
0 years, male, white, stage:Stage IV, dead, 313 days
28.2
TCGA-G6-A8L7-01A
0 years, female, black or african american, stage:Stage I, alive, 2133 days
28.2
TCGA-BP-4801-01A
0 years, male, white, stage:Stage I, alive, 1124 days
28.2
TCGA-BP-4969-01A
0 years, female, white, stage:Stage I, alive, 1794 days
28.2
TCGA-CJ-5681-01A
0 years, female, white, stage:Stage IV, dead, 552 days
28.1
TCGA-A3-3349-01A
0 years, female, white, stage:Stage I, alive, 1385 days
28.1
TCGA-CJ-4893-01A
0 years, female, white, stage:Stage I, alive, 750 days
28.0
TCGA-A3-3363-01A
0 years, male, asian, stage:Stage II, alive, 319 days
28.0
TCGA-CJ-4902-01A
0 years, male, white, stage:Stage III, alive, 1520 days
27.9
TCGA-CZ-5462-01A
0 years, male, white, stage:Stage IV, dead, 311 days
27.9
TCGA-BP-4971-01A
0 years, male, white, stage:Stage III, alive, 1487 days
27.9
TCGA-A3-A8OV-01A
0 years, male, black or african american, stage:Stage I, alive, 340 days
27.8
TCGA-BP-5183-01A
0 years, male, white, stage:Stage III, alive, 1291 days
27.8
TCGA-CJ-4634-01A
0 years, female, white, stage:Stage I, alive, 3498 days
27.8
TCGA-B0-4845-01A
0 years, male, white, stage:Stage IV, dead, 1986 days
27.8
TCGA-CJ-5686-01A
0 years, female, white, stage:Stage I, alive, 2038 days
27.4
TCGA-AK-3440-01A
0 years, male, white, stage:Stage I, alive, 2865 days
27.4
TCGA-CZ-4864-01A
0 years, male, white, stage:Stage II, dead, 1315 days
27.4
TCGA-BP-5004-01A
0 years, male, white, stage:Stage I, alive, 1126 days
27.3
TCGA-BP-4344-01A
0 years, female, white, stage:Stage I, alive, 1666 days
27.3
TCGA-B0-5084-01A
0 years, male, white, stage:Stage IV, dead, 222 days
27.2
TCGA-AK-3465-01A
0 years, female, black or african american, stage:Stage I, alive, 369 days
27.2
TCGA-BP-5175-01A
0 years, male, white, stage:Stage I, alive, 932 days
27.2
TCGA-CJ-4907-01A
0 years, male, white, stage:Stage III, alive, 1499 days
27.1
TCGA-BP-4351-01A
0 years, female, white, stage:Stage III, alive, 970 days
27.0
TCGA-CJ-5683-01A
0 years, male, white, stage:Stage I, alive, 1889 days
27.0
TCGA-BP-4765-01A
0 years, male, white, stage:Stage I, alive, 2184 days
26.9
TCGA-BP-5180-01A
0 years, male, white, stage:Stage I, alive, 2263 days
26.9
TCGA-BP-5174-01A
0 years, female, white, stage:Stage I, alive, 2257 days
26.8
TCGA-B4-5844-01A
0 years, female, white, stage:Stage II, alive, 7 days
26.8
TCGA-B0-5081-01A
0 years, female, white, stage:Stage III, dead, 362 days
26.8
TCGA-BP-4991-01A
0 years, male, white, stage:Stage I, alive, 1413 days
26.8
TCGA-B8-A54F-01A
0 years, female, black or african american, stage:Stage I, alive, 519 days
26.7
TCGA-B0-4700-01A
0 years, male, white, stage:Stage IV, dead, 1980 days
26.7
TCGA-A3-3317-01A
0 years, male, stage:Stage II, alive, 1491 days
26.7
TCGA-BP-4968-01A
0 years, male, white, stage:Stage I, alive, 1746 days
26.7
TCGA-BP-4962-01A
0 years, male, white, stage:Stage II, alive, 1785 days
26.7
TCGA-B8-5545-01A
0 years, male, black or african american, stage:Stage I, alive, 1525 days
26.6
TCGA-B2-4099-01A
0 years, male, white, stage:Stage I, alive, 972 days
26.6
TCGA-B0-4810-01A
0 years, male, white, stage:Stage III, dead, 478 days
26.5
TCGA-CW-5585-01A
0 years, male, white, stage:Stage IV, alive, 2609 days
26.5
TCGA-CJ-4878-01A
0 years, female, white, stage:Stage III, alive, 2186 days
26.5
TCGA-CJ-6032-01A
0 years, female, white, stage:Stage II, alive, 3639 days
26.5
TCGA-B0-5700-01A
0 years, male, white, stage:Stage I, alive, 1790 days
26.5
TCGA-B0-4710-01A
0 years, female, white, stage:Stage III, alive, 1755 days
26.5
TCGA-CJ-4640-01A
0 years, male, white, stage:Stage III, alive, 3480 days
26.4
TCGA-BP-4756-01A
0 years, female, asian, stage:Stage I, alive, 374 days
26.3
TCGA-B0-4703-01A
0 years, male, white, stage:Stage IV, dead, 182 days
26.3
TCGA-DV-5565-01A
0 years, male, white, stage:Stage I, alive, 1329 days
26.2
TCGA-B0-4842-01A
0 years, female, white, stage:Stage III, dead, 1724 days
26.1
TCGA-A3-3373-01A
0 years, female, white, stage:Stage I, alive, 1621 days
26.1
TCGA-BP-4768-01A
0 years, female, white, stage:Stage I, alive, 400 days
26.1
TCGA-A3-3387-01A
0 years, male, white, stage:Stage I, alive, 617 days
26.1
TCGA-BP-5198-01A
0 years, male, white, stage:Stage III, alive, 603 days
26.1
TCGA-A3-3372-01A
0 years, male, white, stage:Stage III, alive, 735 days
26.0
TCGA-B0-5092-01A
0 years, female, white, stage:Stage IV, dead, 459 days
26.0
TCGA-CJ-4891-01A
0 years, female, white, stage:Stage III, dead, 819 days
26.0
TCGA-B0-5712-01A
0 years, female, black or african american, stage:Stage IV, alive, 2722 days
26.0
TCGA-A3-3359-01A
0 years, female, white, stage:Stage I, alive, 2504 days
25.9
TCGA-CZ-5466-01A
0 years, male, stage:Stage III, alive, 685 days
25.9
TCGA-DV-5573-01A
0 years, male, white, stage:Stage I, alive, 1130 days
25.9
TCGA-CZ-5467-01A
0 years, female, white, stage:Stage III, dead, 73 days
25.8
TCGA-CZ-5451-01A
0 years, male, white, stage:Stage II, alive, 1929 days
25.8
TCGA-A3-3347-01A
0 years, female, white, stage:Stage III, dead, 1610 days
25.8
TCGA-BP-4998-01A
0 years, male, asian, stage:Stage I, alive, 932 days
25.8
TCGA-BP-4807-01A
0 years, male, white, stage:Stage I, alive, 211 days
25.8
TCGA-BP-4963-01A
0 years, male, white, stage:Stage I, alive, 1834 days
25.7
TCGA-BP-4959-01A
0 years, male, white, stage:Stage I, alive, 2660 days
25.7
TCGA-CJ-4899-01A
0 years, male, asian, stage:Stage I, alive, 1528 days
25.7
TCGA-B0-5110-01A
0 years, female, white, stage:Stage I, alive, 2009 days
25.7
TCGA-AK-3456-01A
0 years, male, black or african american, stage:Stage II, alive, 1143 days
25.6
TCGA-A3-3320-01A
0 years, female, white, stage:Stage I, alive, 1508 days
25.6
TCGA-CZ-4858-01A
0 years, male, white, stage:Stage II, dead, 2105 days
25.6
TCGA-DV-5576-01A
0 years, female, black or african american, stage:Stage I, dead, 727 days
25.5
TCGA-BP-5176-01A
0 years, female, white, stage:Stage I, dead, 1590 days
25.5
TCGA-CZ-4856-01A
0 years, female, white, stage:Stage I, alive, 18 days
25.5
TCGA-BP-4992-01A
0 years, male, white, stage:Stage I, alive, 501 days
25.4
TCGA-CJ-4904-01A
0 years, female, white, stage:Stage IV, alive, 3302 days
25.4
TCGA-BP-5189-01A
0 years, male, white, stage:Stage I, dead, 822 days
25.3
TCGA-B0-5099-01A
0 years, female, white, stage:Stage III, dead, 485 days
25.2
TCGA-BP-4982-01A
0 years, male, white, stage:Stage I, alive, 1014 days
25.2
TCGA-BP-4965-01A
0 years, male, white, stage:Stage I, alive, 1871 days
25.2
TCGA-BP-4961-01A
0 years, male, white, stage:Stage I, alive, 1935 days
25.2
TCGA-B8-A54G-01A
0 years, male, black or african american, stage:Stage I, alive, 53 days
25.1
TCGA-BP-4167-01A
0 years, male, white, stage:Stage III, alive, 2718 days
25.1
TCGA-BP-4762-01A
0 years, male, white, stage:Stage I, dead, 1343 days
25.1
TCGA-B0-4945-01A
0 years, female, white, stage:Stage I, dead, 2145 days
25.0
TCGA-B4-5836-01A
0 years, female, white, stage:Stage I, alive, 141 days
25.0
TCGA-CJ-5671-01A
0 years, male, white, stage:Stage I, alive, 3987 days
24.9
TCGA-CJ-4897-01A
0 years, female, white, stage:Stage III, alive, 3341 days
24.9
TCGA-CJ-4643-01A
0 years, female, white, stage:Stage II, alive, 1793 days
24.9
TCGA-AS-3777-01A
0 years, male, white, stage:Stage I, alive, 1238 days
24.9
TCGA-BP-4999-01A
0 years, male, white, stage:Stage I, alive, 1266 days
24.9
TCGA-BP-4787-01A
0 years, female, white, stage:Stage IV, dead, 480 days
24.9
TCGA-CW-6093-01A
0 years, male, white, stage:Stage I, alive, 3146 days
24.8
TCGA-B0-5094-01A
0 years, male, white, stage:Stage IV, dead, 333 days
24.8
TCGA-AK-3426-01A
0 years, male, white, stage:Stage III, dead, 885 days
24.7
TCGA-CZ-4865-01A
0 years, female, white, stage:Stage I, dead, 166 days
24.7
TCGA-BP-4972-01A
0 years, female, white, stage:Stage III, alive, 1502 days
24.6
TCGA-CJ-4881-01A
0 years, male, white, stage:Stage III, alive, 2014 days
24.6
TCGA-A3-A6NN-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
24.6
TCGA-DV-A4W0-01A
0 years, male, black or african american, stage:Stage I, alive, 2470 days
24.6
TCGA-B0-5709-01A
0 years, female, white, stage:Stage III, alive, 3974 days
24.6
TCGA-A3-3325-01A
0 years, male, white, stage:Stage I, dead, 1170 days
24.6
TCGA-CJ-4908-01A
0 years, male, white, stage:Stage I, alive, 1531 days
24.6
TCGA-B0-4828-01A
0 years, male, white, stage:Stage IV, dead, 307 days
24.5
TCGA-CW-5589-01A
0 years, male, white, stage:Stage I, alive, 2378 days
24.5
TCGA-A3-3322-01A
0 years, male, white, stage:Stage I, alive, 1478 days
24.5
TCGA-BP-4349-01A
0 years, female, white, stage:Stage I, alive, 372 days
24.5
TCGA-A3-3323-01A
0 years, male, white, stage:Stage I, alive, 1106 days
24.5
TCGA-BP-4769-01A
0 years, male, white, stage:Stage I, alive, 1876 days
24.5
TCGA-BP-5182-01A
0 years, male, white, stage:Stage I, alive, 1165 days
24.5
TCGA-BP-4777-01A
0 years, male, white, stage:Stage I, alive, 1731 days
24.4
TCGA-BP-4774-01A
0 years, female, white, stage:Stage I, alive, 1885 days
24.4
TCGA-BP-4987-01A
0 years, female, asian, stage:Stage I, alive, 1124 days
24.4
TCGA-CJ-4873-01A
0 years, female, white, stage:Stage III, alive, 1776 days
24.3
TCGA-BP-5010-01A
0 years, male, white, stage:Stage III, dead, 878 days
24.3
TCGA-CW-5590-01A
0 years, male, white, stage:Stage IV, dead, 1075 days
24.3
TCGA-B0-4813-01A
0 years, male, white, stage:Stage III, dead, 18 days
24.3
TCGA-B0-4823-01A
0 years, male, white, stage:Stage I, dead, 454 days
24.2
TCGA-B0-4824-01A
0 years, female, white, stage:Stage I, dead, 1657 days
24.2
TCGA-CJ-4889-01A
0 years, female, white, stage:Stage I, alive, 1946 days
24.2
TCGA-CZ-5452-01A
0 years, male, white, stage:Stage II, alive, 1789 days
24.1
TCGA-BP-5196-01A
0 years, male, white, stage:Stage I, alive, 1018 days
24.1
TCGA-B8-5158-01A
0 years, male, white, stage:Stage III, alive, 1218 days
24.0
TCGA-DV-A4VZ-01A
0 years, male, black or african american, stage:Stage I, alive, 365 days
24.0
TCGA-BP-4766-01A
0 years, female, white, stage:Stage I, alive, 1462 days
24.0
TCGA-A3-3331-01A
0 years, female, white, stage:Stage I, alive, 1257 days
24.0
TCGA-BP-5195-01A
0 years, male, white, stage:Stage I, alive, 749 days
24.0
TCGA-B8-5164-01A
0 years, male, white, stage:Stage III, alive, 26 days
23.9
TCGA-B0-4843-01A
0 years, male, white, stage:Stage III, dead, 320 days
23.9
TCGA-CZ-5464-01A
0 years, male, white, stage:Stage IV, alive, 2128 days
23.9
TCGA-BP-5173-01A
0 years, male, white, stage:Stage I, dead, 62 days
23.8
TCGA-B8-4143-01A
0 years, female, white, stage:Stage IV, dead, 709 days
23.8
TCGA-6D-AA2E-01A
0 years, female, black or african american, stage:Stage I, alive, 362 days
23.8
TCGA-BP-4970-01A
0 years, male, asian, stage:Stage III, alive, 433 days
23.8
TCGA-CW-5583-01A
0 years, female, white, stage:Stage I, alive, 2489 days
23.8
TCGA-CJ-4635-01A
0 years, male, white, stage:Stage I, alive, 1416 days
23.7
TCGA-B0-4822-01A
0 years, male, white, stage:Stage II, dead, 1111 days
23.7
TCGA-A3-3351-01A
0 years, male, white, stage:Stage II, alive, 910 days
23.7
TCGA-A3-3335-01A
0 years, male, white, stage:Stage II, alive, 1886 days
23.7
TCGA-AK-3443-01A
0 years, male, white, stage:Stage II, alive, 1423 days
23.7
TCGA-CJ-4641-01A
0 years, female, white, stage:Stage IV, dead, 1661 days
23.7
TCGA-CJ-4920-01A
0 years, female, white, stage:Stage I, dead, 139 days
23.6
TCGA-BP-4173-01A
0 years, male, white, stage:Stage II, alive, 1893 days
23.6
TCGA-B0-5695-01A
0 years, female, white, stage:Stage I, alive, 2150 days
23.6
TCGA-CJ-4644-01A
0 years, female, white, stage:Stage IV, dead, 336 days
23.6
TCGA-B2-5635-01A
0 years, male, white, stage:Stage I, alive, 755 days
23.5
TCGA-BP-4790-01A
0 years, male, white, stage:Stage I, dead, 1111 days
23.5
TCGA-CJ-4894-01A
0 years, male, white, stage:Stage III, dead, 841 days
23.5
TCGA-B0-5705-01A
0 years, female, white, stage:Stage I, alive, 4537 days
23.5
TCGA-BP-4163-01A
0 years, female, white, stage:Stage III, alive, 2839 days
23.5
TCGA-B4-5834-01A
0 years, male, white, stage:Stage I, alive, 38 days
23.5
TCGA-BP-4347-01A
0 years, male, white, stage:Stage III, alive, 1367 days
23.4
TCGA-BP-4795-01A
0 years, female, white, stage:Stage I, alive, 620 days
23.4
TCGA-CZ-5984-01A
0 years, male, white, stage:Stage I, alive, 2067 days
23.4
TCGA-CZ-5987-01A
0 years, male, white, stage:Stage IV, dead, 445 days
23.4
TCGA-BP-5008-01A
0 years, male, white, stage:Stage I, alive, 1071 days
23.3
TCGA-CZ-5463-01A
0 years, male, white, stage:Stage II, alive, 662 days
23.3
TCGA-A3-3365-01A
0 years, male, white, stage:Stage I, alive, 873 days
23.3
TCGA-B4-5838-01A
0 years, male, white, stage:'--, alive, 166 days
23.3
TCGA-BP-4337-01A
0 years, female, white, stage:Stage III, dead, 2 days
23.2
TCGA-G6-A5PC-01A
0 years, female, black or african american, stage:Stage IV, dead, 242 days
23.2
TCGA-CJ-4912-01A
0 years, male, white, stage:Stage II, alive, 1657 days
23.1
TCGA-BP-4967-01A
0 years, male, white, stage:Stage III, alive, 205 days
23.1
TCGA-A3-3311-01A
0 years, male, stage:Stage I, dead, 1191 days
23.1
TCGA-BP-4345-01A
0 years, male, white, stage:Stage III, alive, 1516 days
23.0
TCGA-BP-5001-01A
0 years, female, white, stage:Stage I, alive, 1177 days
23.0
TCGA-BP-5006-01A
0 years, male, white, stage:Stage I, alive, 840 days
23.0
TCGA-AK-3445-01A
0 years, male, white, stage:Stage III, alive, 2392 days
22.9
TCGA-BP-4342-01A
0 years, male, white, stage:Stage II, dead, 2256 days
22.9
TCGA-B0-4691-01A
0 years, male, white, stage:Stage IV, dead, 139 days
22.9
TCGA-B0-4818-01A
0 years, female, white, stage:Stage II, dead, 510 days
22.9
TCGA-BP-4803-01A
0 years, male, white, stage:Stage III, alive, 204 days
22.9
TCGA-B0-4847-01A
0 years, male, white, stage:Stage IV, dead, 793 days
22.9
TCGA-B2-4098-01A
0 years, female, black or african american, stage:Stage I, dead, 51 days
22.8
TCGA-BP-5178-01A
0 years, male, white, stage:Stage IV, dead, 1912 days
22.8
TCGA-BP-5184-01A
0 years, male, white, stage:Stage I, alive, 1133 days
22.8
TCGA-B0-4816-01A
0 years, male, white, stage:Stage II, dead, 1371 days
22.8
TCGA-EU-5904-01A
0 years, female, white, stage:Stage I, alive, 551 days
22.8
TCGA-CW-6087-01A
0 years, male, white, stage:Stage IV, dead, 41 days
22.8
TCGA-BP-5200-01A
0 years, male, white, stage:Stage II, alive, 1063 days
22.8
TCGA-BP-4760-01A
0 years, male, black or african american, stage:Stage I, alive, 2361 days
22.7
TCGA-B0-5399-01A
0 years, male, white, stage:Stage I, alive, 1411 days
22.7
TCGA-B0-4693-01A
0 years, female, white, stage:Stage III, dead, 77 days
22.7
TCGA-B0-4690-01A
0 years, male, white, stage:Stage IV, dead, 43 days
22.6
TCGA-BP-4166-01A
0 years, male, white, stage:Stage III, alive, 13 days
22.6
TCGA-A3-3307-01A
0 years, male, stage:Stage III, alive, 1436 days
22.6
TCGA-B0-5075-01A
0 years, female, white, stage:Stage III, dead, 637 days
22.5
TCGA-BP-4161-01A
0 years, male, white, stage:Stage I, alive, 2746 days
22.5
TCGA-A3-3352-01A
0 years, male, white, stage:Stage III, dead, 561 days
22.5
TCGA-BP-4789-01A
0 years, male, white, stage:Stage I, alive, 1489 days
22.5
TCGA-B0-5713-01A
0 years, female, white, stage:Stage III, alive, 2782 days
22.5
TCGA-BP-4327-01A
0 years, female, white, stage:Stage II, dead, 109 days
22.4
TCGA-B0-5100-01A
0 years, male, black or african american, stage:Stage III, dead, 1913 days
22.4
TCGA-CJ-4905-01A
0 years, female, white, stage:Stage I, alive, 1496 days
22.4
TCGA-CZ-4853-01A
0 years, male, white, stage:Stage I, alive, 774 days
22.4
TCGA-B0-4849-01A
0 years, male, white, stage:Stage III, dead, 69 days
22.3
TCGA-A3-3324-01A
0 years, male, white, stage:Stage I, alive, 1186 days
22.3
TCGA-BP-4164-01A
0 years, female, white, stage:Stage III, dead, 992 days
22.3
TCGA-B0-5120-01A
0 years, female, white, stage:Stage I, alive, 1169 days
22.3
TCGA-DV-5575-01A
0 years, female, white, stage:Stage I, alive, 1729 days
22.3
TCGA-B0-5095-01A
0 years, male, white, stage:Stage III, dead, 245 days
22.3
TCGA-B0-5692-01A
0 years, female, white, stage:Stage III, alive, 3944 days
22.3
TCGA-CZ-5461-01A
0 years, male, white, stage:Stage IV, dead, 330 days
22.2
TCGA-B8-4622-01A
0 years, male, white, stage:Stage IV, alive, 1525 days
22.1
TCGA-B0-5703-01A
0 years, male, white, stage:Stage I, alive, 2246 days
22.1
TCGA-CW-5588-01A
0 years, female, white, stage:Stage I, alive, 2017 days
22.1
TCGA-CZ-5468-01A
0 years, male, white, stage:Stage IV, dead, 59 days
22.1
TCGA-BP-4332-01A
0 years, male, white, stage:Stage III, alive, 1133 days
22.0
TCGA-CW-6097-01A
0 years, male, white, stage:Stage III, dead, 571 days
22.0
TCGA-CZ-5986-01A
0 years, male, white, stage:Stage I, alive, 373 days
21.9
TCGA-BP-5202-01A
0 years, male, white, stage:Stage III, alive, 29 days
21.9
TCGA-BP-4770-01A
0 years, female, white, stage:Stage IV, dead, 329 days
21.9
TCGA-CZ-4860-01A
0 years, male, white, stage:Stage IV, dead, 206 days
21.8
TCGA-B0-5102-01A
0 years, female, white, stage:Stage I, dead, 2764 days
21.7
TCGA-CJ-5682-01A
0 years, male, white, stage:Stage IV, alive, 3736 days
21.7
TCGA-BP-4176-01A
0 years, male, white, stage:Stage I, alive, 1955 days
21.7
TCGA-BP-5186-01A
0 years, female, white, stage:Stage I, alive, 693 days
21.7
TCGA-BP-4989-01A
0 years, male, white, stage:Stage III, alive, 118 days
21.6
TCGA-B0-5085-01A
0 years, female, white, stage:Stage III, dead, 770 days
21.6
TCGA-B0-5077-01A
0 years, male, white, stage:Stage I, dead, 1317 days
21.5
TCGA-B0-5080-01A
0 years, male, white, stage:Stage IV, dead, 342 days
21.5
TCGA-BP-4797-01A
0 years, male, white, stage:Stage III, alive, 1107 days
21.5
TCGA-AK-3460-01A
0 years, male, white, stage:Stage I, alive, 2508 days
21.4
TCGA-BP-5190-01A
0 years, male, white, stage:Stage I, alive, 1011 days
21.4
TCGA-BP-4355-01A
0 years, female, white, stage:Stage III, dead, 953 days
21.3
TCGA-BP-5201-01A
0 years, male, white, stage:Stage IV, alive, 951 days
21.3
TCGA-A3-3343-01A
0 years, male, white, stage:Stage II, alive, 945 days
21.3
TCGA-B0-4714-01A
0 years, male, white, stage:Stage IV, dead, 99 days
21.3
TCGA-BP-4804-01A
0 years, male, white, stage:Stage I, alive, 1459 days
21.3
TCGA-CZ-4862-01A
0 years, male, white, stage:Stage I, alive, 3271 days
21.2
TCGA-AK-3431-01A
0 years, female, white, stage:Stage II, dead, 2241 days
21.2
TCGA-CJ-4886-01A
0 years, female, white, stage:Stage I, alive, 1952 days
21.2
TCGA-B0-4838-01A
0 years, female, white, stage:Stage I, dead, 834 days
21.1
TCGA-CZ-5988-01A
0 years, male, white, stage:Stage I, alive, 693 days
21.1
TCGA-B8-5159-01A
0 years, female, white, stage:Stage I, alive, 722 days
21.1
TCGA-EU-5905-01A
0 years, female, white, stage:Stage I, alive, 119 days
21.1
TCGA-BP-4326-01A
0 years, female, white, stage:Stage I, dead, 1625 days
21.1
TCGA-B2-4101-01A
0 years, male, white, stage:Stage II, alive, 648 days
21.1
TCGA-CW-5580-01A
0 years, female, white, stage:Stage IV, dead, 1964 days
21.0
TCGA-AK-3453-01A
0 years, female, white, stage:Stage II, alive, 2531 days
21.0
TCGA-BP-4330-01A
0 years, female, black or african american, stage:Stage III, alive, 1888 days
20.8
TCGA-CJ-5684-01A
0 years, male, white, stage:Stage III, alive, 2231 days
20.8
TCGA-CJ-4888-01A
0 years, male, white, stage:Stage IV, dead, 1567 days
20.8
TCGA-B8-5165-01A
0 years, male, white, stage:Stage I, alive, 737 days
20.8
TCGA-CJ-4869-01A
0 years, male, white, stage:Stage III, alive, 2554 days
20.8
TCGA-BP-4784-01A
0 years, female, white, stage:Stage I, alive, 1854 days
20.8
TCGA-CZ-5453-01A
0 years, male, white, stage:Stage II, dead, 2419 days
20.8
TCGA-DV-5568-01A
0 years, male, white, stage:Stage I, alive, 370 days
20.8
TCGA-CZ-5459-01A
0 years, male, white, stage:Stage III, alive, 1683 days
20.8
TCGA-BP-5177-01A
0 years, female, white, stage:Stage I, alive, 293 days
20.8
TCGA-BP-5181-01A
0 years, female, white, stage:Stage I, alive, 1495 days
20.7
TCGA-CJ-5678-01A
0 years, male, black or african american, stage:Stage IV, dead, 574 days
20.7
TCGA-B8-4620-01A
0 years, female, white, stage:Stage III, alive, 777 days
20.7
TCGA-AK-3454-01A
0 years, male, white, stage:Stage I, alive, 874 days
20.7
TCGA-B8-4619-01A
0 years, male, white, stage:Stage I, alive, 523 days
20.6
TCGA-CJ-4639-01A
0 years, female, white, stage:Stage II, alive, 3229 days
20.6
TCGA-CJ-6033-01A
0 years, female, white, stage:Stage IV, dead, 224 days
20.6
TCGA-CJ-4895-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
20.6
TCGA-BP-4976-01A
0 years, male, white, stage:Stage I, alive, 1632 days
20.5
TCGA-BP-5187-01A
0 years, male, white, stage:Stage I, alive, 406 days
20.5
TCGA-B4-5843-01A
0 years, male, white, stage:Stage I, alive, 11 days
20.5
TCGA-B0-4697-01A
0 years, female, white, stage:Stage IV, dead, 578 days
20.5
TCGA-CZ-4857-01A
0 years, male, white, stage:Stage IV, dead, 1432 days
20.4
TCGA-BP-4346-01A
0 years, male, white, stage:Stage III, dead, 1493 days
20.4
TCGA-A3-3374-01A
0 years, female, black or african american, stage:Stage I, alive, 1314 days
20.3
TCGA-B0-4706-01A
0 years, male, white, stage:Stage III, dead, 65 days
20.3
TCGA-BP-4781-01A
0 years, male, white, stage:Stage I, alive, 2080 days
20.3
TCGA-B0-5812-01A
0 years, male, white, stage:Stage I, alive, 3834 days
20.3
TCGA-BP-4763-01A
0 years, female, white, stage:Stage I, dead, 1270 days
20.2
TCGA-CZ-5985-01A
0 years, male, white, stage:Stage II, alive, 1997 days
20.2
TCGA-BP-4983-01A
0 years, female, asian, stage:Stage III, alive, 1413 days
20.2
TCGA-B0-4817-01A
0 years, male, white, stage:Stage III, dead, 1019 days
20.1
TCGA-CJ-4887-01A
0 years, male, white, stage:Stage IV, dead, 932 days
20.1
TCGA-A3-3385-01A
0 years, female, white, stage:Stage I, alive, 1993 days
20.0
TCGA-BP-5007-01A
0 years, male, white, stage:Stage II, alive, 1140 days
20.0
TCGA-B0-5088-01A
0 years, male, white, stage:Stage I, dead, 563 days
19.9
TCGA-B0-5113-01A
0 years, female, white, stage:Stage III, alive, 1175 days
19.9
TCGA-DV-5567-01A
0 years, female, black or african american, stage:Stage I, alive, 2004 days
19.9
TCGA-BP-4975-01A
0 years, male, white, stage:Stage I, alive, 1433 days
19.9
TCGA-DV-5569-01A
0 years, female, white, stage:Stage I, alive, 355 days
19.9
TCGA-B0-4827-01A
0 years, female, white, stage:Stage III, dead, 885 days
19.9
TCGA-CJ-4885-01A
0 years, male, white, stage:Stage IV, alive, 3451 days
19.8
TCGA-B0-5119-01A
0 years, female, white, stage:Stage I, alive, 1552 days
19.8
TCGA-CZ-5458-01A
0 years, male, white, stage:Stage III, alive, 2789 days
19.8
TCGA-B0-4701-01A
0 years, female, white, stage:Stage IV, dead, 238 days
19.8
TCGA-BP-4170-01A
0 years, female, white, stage:Stage I, dead, 2343 days
19.8
TCGA-BP-4771-01A
0 years, male, white, stage:Stage IV, dead, 162 days
19.8
TCGA-BP-4981-01A
0 years, female, white, stage:Stage III, dead, 1097 days
19.8
TCGA-CJ-4903-01A
0 years, male, white, stage:Stage I, alive, 1560 days
19.8
TCGA-BP-4960-01A
0 years, male, white, stage:Stage II, alive, 2172 days
19.7
TCGA-CJ-4638-01A
0 years, female, white, stage:Stage IV, dead, 431 days
19.7
TCGA-A3-3383-01A
0 years, male, white, stage:Stage I, alive, 861 days
19.6
TCGA-BP-4341-01A
0 years, male, white, stage:Stage III, dead, 1589 days
19.6
TCGA-AK-3429-01A
0 years, female, white, stage:Stage II, alive, 3328 days
19.6
TCGA-B8-5549-01A
0 years, male, white, stage:Stage I, alive, 194 days
19.5
TCGA-CW-5587-01A
0 years, female, white, stage:Stage III, alive, 2226 days
19.5
TCGA-A3-3316-01A
0 years, male, white, stage:Stage II, alive, 1493 days
19.5
TCGA-BP-5000-01A
0 years, male, white, stage:Stage I, alive, 563 days
19.5
TCGA-BP-4158-01A
0 years, male, white, stage:Stage I, alive, 3377 days
19.5
TCGA-CZ-5460-01A
0 years, male, white, stage:Stage IV, alive, 2873 days
19.4
TCGA-AK-3436-01A
0 years, male, white, stage:Stage IV, alive, 3331 days
19.4
TCGA-BP-4993-01A
0 years, male, white, stage:Stage I, alive, 177 days
19.4
TCGA-BP-4761-01A
0 years, male, white, stage:Stage III, alive, 182 days
19.4
TCGA-B0-4846-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
19.4
TCGA-A3-3329-01A
0 years, male, white, stage:Stage I, alive, 1624 days
19.4
TCGA-CZ-5455-01A
0 years, male, white, stage:Stage IV, dead, 561 days
19.3
TCGA-BP-4776-01A
0 years, male, white, stage:Stage I, alive, 411 days
19.3
TCGA-B0-4707-01A
0 years, male, white, stage:Stage III, dead, 600 days
19.3
TCGA-A3-3382-01A
0 years, male, white, stage:Stage I, alive, 574 days
19.2
TCGA-B0-4713-01A
0 years, female, white, stage:Stage III, dead, 202 days
19.2
TCGA-CZ-5469-01A
0 years, male, white, stage:Stage II, dead, 946 days
19.2
TCGA-CJ-4901-01A
0 years, male, white, stage:Stage III, alive, 1450 days
19.2
TCGA-CJ-4637-01A
0 years, female, white, stage:Stage IV, dead, 2227 days
19.1
TCGA-CJ-4918-01A
0 years, male, white, stage:Stage IV, dead, 93 days
19.1
TCGA-B0-5106-01A
0 years, male, white, stage:Stage I, dead, 1598 days
19.1
TCGA-CJ-4884-01A
0 years, female, white, stage:Stage III, alive, 1759 days
19.1
TCGA-B0-5108-01A
0 years, male, white, stage:Stage III, alive, 1782 days
19.0
TCGA-B0-4811-01A
0 years, male, white, stage:Stage III, dead, 1417 days
19.0
TCGA-B8-A54D-01A
0 years, male, black or african american, stage:Stage III, alive, 830 days
19.0
TCGA-CJ-4874-01A
0 years, female, white, stage:Stage I, alive, 2283 days
18.9
TCGA-A3-3313-01A
0 years, male, black or african american, stage:Stage I, dead, 735 days
18.9
TCGA-B4-5378-01A
0 years, male, white, stage:Stage I, alive, 175 days
18.7
TCGA-A3-3326-01A
0 years, male, white, stage:Stage I, alive, 1137 days
18.7
TCGA-B0-5096-01A
0 years, female, white, stage:Stage III, dead, 68 days
18.7
TCGA-DV-5574-01A
0 years, male, white, stage:Stage I, alive, 2016 days
18.7
TCGA-B0-4819-01A
0 years, female, white, stage:Stage IV, dead, 183 days
18.7
TCGA-BP-4354-01A
0 years, male, white, stage:Stage IV, dead, 1034 days
18.6
TCGA-AK-3434-01A
0 years, male, white, stage:Stage I, alive, 2087 days
18.5
TCGA-B8-A54K-01A
0 years, male, black or african american, stage:Stage I, alive, 469 days
18.5
TCGA-B2-5639-01A
0 years, male, white, stage:Stage IV, dead, 1003 days
18.5
TCGA-BP-4159-01A
0 years, male, white, stage:Stage I, dead, 2601 days
18.4
TCGA-B0-5693-01A
0 years, female, white, stage:Stage I, alive, 4074 days
18.4
TCGA-CJ-4636-01A
0 years, male, white, stage:Stage III, alive, 1924 days
18.4
TCGA-B0-4839-01A
0 years, female, white, stage:Stage I, dead, 1639 days
18.3
TCGA-B8-A54I-01A
0 years, male, black or african american, stage:Stage I, alive, 150 days
18.3
TCGA-A3-3380-01A
0 years, male, stage:Stage I, alive, 567 days
18.2
TCGA-CJ-4916-01A
0 years, female, white, stage:Stage III, alive, 1373 days
18.2
TCGA-CJ-4872-01A
0 years, male, white, stage:Stage I, alive, 1435 days
18.1
TCGA-B0-4852-01A
0 years, female, white, stage:Stage II, dead, 1121 days
18.1
TCGA-BP-5194-01A
0 years, male, white, stage:Stage I, alive, 408 days
18.0
TCGA-BP-4165-01A
0 years, female, white, stage:Stage I, alive, 3037 days
18.0
TCGA-B0-4815-01A
0 years, male, white, stage:Stage III, dead, 1588 days
17.9
TCGA-BP-5192-01A
0 years, male, white, stage:Stage I, alive, 714 days
17.9
TCGA-BP-4169-01A
0 years, female, white, stage:Stage II, dead, 701 days
17.9
TCGA-CJ-4882-01A
0 years, male, black or african american, stage:Stage III, alive, 1883 days
17.8
TCGA-CJ-4870-01A
0 years, female, black or african american, stage:Stage III, alive, 1498 days
17.7
TCGA-CZ-5465-01A
0 years, female, stage:Stage III, dead, 2564 days
17.6
TCGA-A3-3367-01A
0 years, male, white, stage:Stage I, alive, 2270 days
17.6
TCGA-CJ-5676-01A
0 years, male, white, stage:Stage III, alive, 4067 days
17.6
TCGA-G6-A8L6-01A
0 years, male, black or african american, stage:Stage IV, dead, 313 days
17.5
TCGA-CZ-4854-01A
0 years, male, white, stage:Stage I, dead, 1404 days
17.5
TCGA-B0-5699-01A
0 years, male, white, stage:Stage I, alive, 3841 days
17.5
TCGA-B0-5694-01A
0 years, male, white, stage:Stage III, dead, 480 days
17.4
TCGA-BP-5009-01A
0 years, male, white, stage:Stage I, dead, 1092 days
17.4
TCGA-CJ-4875-01A
0 years, male, white, stage:Stage IV, dead, 3554 days
17.4
TCGA-CJ-4890-01A
0 years, male, white, stage:Stage IV, alive, 3519 days
17.3
TCGA-BP-4160-01A
0 years, male, white, stage:Stage III, alive, 2881 days
17.3
TCGA-B0-4836-01A
0 years, male, white, stage:Stage IV, dead, 1238 days
17.2
TCGA-B2-3924-01A
0 years, male, white, stage:Stage I, alive, 1092 days
17.2
TCGA-B0-4814-01A
0 years, male, white, stage:Stage IV, dead, 168 days
17.2
TCGA-CZ-5982-01A
0 years, female, white, stage:Stage I, alive, 2439 days
17.1
TCGA-BP-4964-01A
0 years, female, white, stage:Stage I, alive, 1862 days
17.1
TCGA-A3-3357-01A
0 years, male, white, stage:Stage II, alive, 2688 days
17.0
TCGA-B0-5117-01A
0 years, male, white, stage:Stage I, alive, 1608 days
16.9
TCGA-BP-4973-01A
0 years, male, white, stage:Stage III, alive, 1384 days
16.9
TCGA-BP-4985-01A
0 years, male, white, stage:Stage III, dead, 952 days
16.9
TCGA-B8-5551-01A
0 years, female, black or african american, stage:Stage I, alive, 16 days
16.9
TCGA-B0-5710-01A
0 years, male, white, stage:Stage I, alive, 2430 days
16.8
TCGA-G6-A8L8-01A
0 years, female, black or african american, stage:Stage I, dead, 1091 days
16.7
TCGA-BP-5170-01A
0 years, male, white, stage:Stage I, alive, 2412 days
16.6
TCGA-B4-5835-01A
0 years, female, white, stage:Stage I, alive, 16 days
16.5
TCGA-CJ-6030-01A
0 years, male, white, stage:Stage I, dead, 2299 days
16.4
TCGA-A3-3306-01A
0 years, male, white, stage:Stage I, alive, 1120 days
16.4
TCGA-CJ-6031-01A
0 years, male, white, stage:Stage I, alive, 1906 days
16.4
TCGA-B0-5711-01A
0 years, male, white, stage:Stage III, alive, 3989 days
16.4
TCGA-CJ-6028-01A
0 years, male, white, stage:Stage IV, dead, 1625 days
16.3
TCGA-B0-4837-01A
0 years, male, white, stage:Stage I, dead, 1378 days
16.0
TCGA-B8-4154-01A
0 years, female, white, stage:Stage I, alive, 1380 days
16.0
TCGA-CJ-4900-01A
0 years, female, white, stage:Stage IV, dead, 1714 days
16.0
TCGA-BP-5168-01A
0 years, male, white, stage:Stage I, dead, 1463 days
15.9
TCGA-BP-4977-01A
0 years, male, white, stage:Stage I, alive, 454 days
15.7
TCGA-B0-4718-01A
0 years, male, white, stage:Stage III, alive, 1778 days
15.4
TCGA-BP-4343-01A
0 years, male, white, stage:Stage III, dead, 1912 days
15.3
TCGA-B0-4833-01A
0 years, female, white, stage:Stage I, dead, 2386 days
15.2
TCGA-B0-5109-01A
0 years, male, white, stage:Stage III, dead, 587 days
15.1
TCGA-BP-4335-01A
0 years, female, white, stage:Stage IV, dead, 475 days
15.0
TCGA-BP-4353-01A
0 years, male, white, stage:Stage I, dead, 375 days
14.9
TCGA-BP-4329-01A
0 years, male, white, stage:Stage III, dead, 845 days
14.8
TCGA-B0-5698-01A
0 years, male, black or african american, stage:Stage I, alive, 3631 days
14.8
TCGA-CZ-4861-01A
0 years, male, white, stage:Stage II, dead, 446 days
14.7
TCGA-MM-A564-01A
0 years, male, black or african american, stage:Stage II, alive, 607 days
14.7
TCGA-B8-5163-01A
0 years, female, white, stage:Stage III, alive, 822 days
14.7
TCGA-BP-4177-01A
0 years, male, white, stage:Stage I, alive, 1670 days
14.6
TCGA-B0-5097-01A
0 years, female, white, stage:Stage III, alive, 665 days
14.4
TCGA-CZ-5457-01A
0 years, male, white, stage:Stage III, alive, 2754 days
14.3
TCGA-CW-6090-01A
0 years, male, white, stage:Stage I, alive, 2552 days
14.3
TCGA-B8-4151-01A
0 years, female, white, stage:Stage III, alive, 1299 days
14.2
TCGA-AK-3428-01A
0 years, male, white, stage:Stage III, alive, 3728 days
13.6
TCGA-CZ-5470-01A
0 years, female, stage:Stage II, alive, 386 days
13.5
TCGA-B0-4834-01A
0 years, male, white, stage:Stage I, dead, 2090 days
13.3
TCGA-BP-5185-01A
0 years, male, white, stage:Stage I, alive, 1132 days
12.9
TCGA-BP-5169-01A
0 years, male, white, stage:Stage I, alive, 193 days
12.8
TCGA-CZ-5454-01A
0 years, male, white, stage:Stage IV, dead, 722 days
12.8
TCGA-B8-5162-01A
0 years, male, white, stage:Stage II, alive, 36 days
12.6
TCGA-BP-4758-01A
0 years, male, white, stage:Stage I, alive, 2208 days
12.4
TCGA-B0-5116-01A
0 years, male, white, stage:Stage III, alive, 1274 days
12.3
TCGA-BP-5191-01A
0 years, male, white, stage:Stage III, alive, 967 days
12.2
TCGA-B0-5083-01A
0 years, male, white, stage:Stage I, dead, 1045 days
12.2
TCGA-B0-5402-01A
0 years, male, white, stage:Stage IV, alive, 1290 days
12.1
TCGA-BP-4798-01A
0 years, male, white, stage:'--, dead, 334 days
12.1
TCGA-BP-4338-01A
0 years, male, white, stage:Stage I, alive, 2859 days
11.5
TCGA-B0-5121-01A
0 years, male, white, stage:Stage I, alive, 1485 days
11.2
TCGA-B0-5706-01A
0 years, male, white, stage:Stage II, alive, 3205 days
10.4
TCGA-BP-4759-01A
0 years, male, white, stage:Stage I, alive, 2372 days
10.0
TCGA-B0-4841-01A
0 years, male, white, stage:Stage IV, dead, 204 days
9.8
TCGA-BP-4799-01A
0 years, male, white, stage:Stage III, dead, 1133 days
6.0
TCGA-B0-5702-01A
0 years, male, white, stage:Stage I, alive, 2172 days
5.1
TCGA-B4-5832-01A
0 years, male, white, stage:Stage III, alive, 155 days
3.9
TCGA-CZ-5989-01A
0 years, male, white, stage:Stage II, alive, 1905 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DEF8 is not prognostic in Kidney Renal Clear Cell Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.2
Number of samples
100
Samples
Sample
Description
TPM
ccRCC-41
0 years, male, NA, stage:pT3bN0M0, dead, 540 days
56.8
ccRCC-102
0 years, male, NA, stage:pT1bN0M0, alive, 4260 days
47.3
ccRCC-98
0 years, male, NA, stage:pT1aN0M0, alive, 30 days
46.7
ccRCC-13
0 years, female, NA, stage:pT3aN2M0, dead, 540 days
43.2
ccRCC-18
0 years, female, NA, stage:pT1aN0M0, alive, 2130 days
40.2
ccRCC-52
0 years, female, NA, stage:pT3bN0M1, alive, 1350 days
39.5
ccRCC-1
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
38.5
ccRCC-81
0 years, male, NA, stage:pT3aN2M0, dead, 1290 days
37.8
ccRCC-3
0 years, male, NA, stage:pT3bN1M0, dead, 240 days
37.5
ccRCC-19
0 years, female, NA, stage:pT2N0M0, alive, 2100 days
37.4
ccRCC-92
0 years, male, NA, stage:pT1aN0M0, alive, 3660 days
36.0
ccRCC-86
0 years, female, NA, stage:pT1bN0M0, alive, 3390 days
35.7
ccRCC-5
0 years, male, NA, stage:pT1aN0M0, alive, 2940 days
35.6
ccRCC-94
0 years, male, NA, stage:pT1bN0M0, dead, 480 days
35.5
ccRCC-15
0 years, female, NA, stage:pT2N0M0, dead, 2070 days
34.9
ccRCC-60
0 years, female, NA, stage:pT1aN0M0, alive, 1470 days
34.8
ccRCC-105
0 years, male, NA, stage:pT1aN0M0, alive, 2190 days
34.6
ccRCC-84
0 years, male, NA, stage:pT1bN0M0, alive, 2010 days
34.5
ccRCC-38
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
34.5
ccRCC-29
0 years, female, NA, stage:pT1aN0M0, alive, 1710 days
34.0
ccRCC-65
0 years, male, NA, stage:pT3bN0M1, dead, 300 days
33.7
ccRCC-80
0 years, male, NA, stage:pT2N0M0, alive, 3000 days
33.6
ccRCC-7
0 years, female, NA, stage:pT2N0M0, alive, 330 days
33.5
ccRCC-93
0 years, male, NA, stage:pT1bN0M0, alive, 3660 days
33.1
ccRCC-20
0 years, female, NA, stage:pT3aN0M1, alive, 930 days
33.0
ccRCC-100
0 years, male, NA, stage:pT1aN0M0, alive, 4260 days
32.9
ccRCC-71
0 years, male, NA, stage:pT1bN0M0, alive, 2160 days
32.4
ccRCC-66
0 years, female, NA, stage:pT3bN0M1, alive, 2520 days
32.0
ccRCC-21
0 years, male, NA, stage:pT1bN0M0, alive, 1080 days
31.8
ccRCC-83
0 years, male, NA, stage:pT1aN0M0, alive, 300 days
31.5
ccRCC-25
0 years, male, NA, stage:pT1aN0M0, alive, 1350 days
31.3
ccRCC-43
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
30.8
ccRCC-75
0 years, male, NA, stage:pT3aN1M1, dead, 180 days
30.8
ccRCC-54
0 years, male, NA, stage:pT1bN0M0, alive, 1200 days
30.7
ccRCC-90
0 years, male, NA, stage:pT1aN0M0, dead, 1170 days
30.6
ccRCC-62
0 years, male, NA, stage:pT1bN0M0, alive, 1620 days
30.2
ccRCC-77
0 years, male, NA, stage:pT1bN0M0, alive, 1860 days
30.2
ccRCC-70
0 years, male, NA, stage:pT4N0M1, dead, 540 days
30.2
ccRCC-31
0 years, male, NA, stage:pT1aN0M0, alive, 1560 days
30.1
ccRCC-12
0 years, male, NA, stage:pT1aN0M0, alive, 900 days
29.9
ccRCC-35
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
29.8
ccRCC-39
0 years, male, NA, stage:pT2N0M0, alive, 900 days
29.6
ccRCC-64
0 years, male, NA, stage:pT3aN0M0, alive, 2430 days
29.3
ccRCC-85
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
29.1
ccRCC-32
0 years, male, NA, stage:pT2N0M0, dead, 1320 days
28.7
ccRCC-97
0 years, male, NA, stage:pT1aN2M1, dead, 990 days
28.6
ccRCC-44
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
28.5
ccRCC-79
0 years, male, NA, stage:pT1bN0M0, alive, 2670 days
28.5
ccRCC-6
0 years, male, NA, stage:pT1bN0M0, alive, 2820 days
28.5
ccRCC-53
0 years, male, NA, stage:pT1aN0M0, alive, 1260 days
28.3
ccRCC-73
0 years, male, NA, stage:pT1aN0M0, alive, 2640 days
27.7
ccRCC-103
0 years, female, NA, stage:pT1aN0M0, alive, 4350 days
27.7
ccRCC-91
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
27.0
ccRCC-10
0 years, male, NA, stage:pT3aN2M1, dead, 90 days
27.0
ccRCC-87
0 years, male, NA, stage:pT1bN0M0, alive, 2370 days
26.8
ccRCC-49
0 years, male, NA, stage:pT3bN0M0, alive, 1290 days
26.3
ccRCC-78
0 years, female, NA, stage:pT1aN0M0, alive, 2610 days
26.1
ccRCC-59
0 years, male, NA, stage:pT1bN0M0, alive, 930 days
25.9
ccRCC-69
0 years, male, NA, stage:pT1aN0M0, alive, 2670 days
25.8
ccRCC-40
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
25.8
ccRCC-104
0 years, female, NA, stage:pT1aN0M0, alive, 3480 days
25.4
ccRCC-72
0 years, male, NA, stage:pT1bN0M0, alive, 2760 days
25.4
ccRCC-58
0 years, male, NA, stage:pT1aN0M0, alive, 1110 days
25.4
ccRCC-99
0 years, female, NA, stage:pT2N0M0, alive, 3330 days
25.4
ccRCC-36
0 years, male, NA, stage:pT2N0M0, alive, 1410 days
25.3
ccRCC-95
0 years, male, NA, stage:pT1bN0M0, alive, 3960 days
25.2
ccRCC-23
0 years, male, NA, stage:pT1bN0M0, alive, 1170 days
25.2
ccRCC-17
0 years, female, NA, stage:pT1bN0M0, alive, 2220 days
25.0
ccRCC-16
0 years, male, NA, stage:pT2N0M0, alive, 2190 days
24.9
ccRCC-96
0 years, male, NA, stage:pT1aN0M0, alive, 3930 days
24.4
ccRCC-42
0 years, male, NA, stage:pT3aN0M0, alive, 1170 days
23.8
ccRCC-89
0 years, male, NA, stage:pT1aN0M0, alive, 3510 days
23.5
ccRCC-30
0 years, male, NA, stage:pT2N0M0, dead, 420 days
23.3
ccRCC-24
0 years, male, NA, stage:pT3bN0M0, dead, 750 days
23.1
ccRCC-2
0 years, male, NA, stage:pT1aN0M1, dead, 2190 days
22.8
ccRCC-48
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
22.6
ccRCC-68
0 years, male, NA, stage:pT1bN0M0, alive, 2640 days
22.5
ccRCC-106
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
22.2
ccRCC-11
0 years, male, NA, stage:pT1aN0M0, alive, 2370 days
22.0
ccRCC-88
0 years, male, NA, stage:pT1aN0M0, alive, 2880 days
22.0
ccRCC-4
0 years, male, NA, stage:pT1bN0M0, dead, 270 days
21.7
ccRCC-67
0 years, male, NA, stage:pT1aN0M0, dead, 1260 days
21.6
ccRCC-22
0 years, male, NA, stage:pT3bN0M0, dead, 330 days
21.5
ccRCC-37
0 years, female, NA, stage:pT1aN0M0, alive, 1500 days
21.5
ccRCC-26
0 years, male, NA, stage:pT1bN0M0, alive, 1800 days
21.4
ccRCC-51
0 years, male, NA, stage:pT3aN0M0, alive, 1410 days
21.0
ccRCC-14
0 years, male, NA, stage:pT3cN0M0, alive, 2280 days
20.9
ccRCC-34
0 years, male, NA, stage:pT3bN0M1, alive, 1530 days
20.6
ccRCC-27
0 years, male, NA, stage:pT1aN0M0, alive, 1590 days
19.6
ccRCC-9
0 years, male, NA, stage:pT2N1M1, dead, 360 days
19.6
ccRCC-46
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
19.4
ccRCC-82
0 years, male, NA, stage:pT1aN0M0, alive, 3090 days
19.3
ccRCC-45
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
18.8
ccRCC-50
0 years, male, NA, stage:pT3bN0M0, alive, 900 days
18.7
ccRCC-76
0 years, female, NA, stage:pT3aN0M1, dead, 960 days
17.9
ccRCC-61
0 years, male, NA, stage:pT1aN0M0, alive, 1470 days
16.7
ccRCC-56
0 years, male, NA, stage:pT1aN0M0, alive, 1950 days
15.9
ccRCC-28
0 years, male, NA, stage:pT1bN0M0, alive, 1530 days
15.2
ccRCC-8
0 years, male, NA, stage:pT1bN0M0, alive, 2400 days
15.0
ccRCC-55
0 years, female, NA, stage:pT3bN0M0, alive, 1260 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DEF8 is not prognostic in Kidney Renal Papillary Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.4
Number of samples
282
Samples
Sample
Description
TPM
TCGA-SX-A7SL-01A
0 years, male, stage:Stage I, alive, 823 days
88.2
TCGA-G7-6797-01A
0 years, male, white, stage:Stage III, alive, 765 days
76.4
TCGA-GL-A9DC-01A
0 years, female, white, stage:Stage I, alive, 392 days
68.6
TCGA-BQ-5876-01A
0 years, male, white, stage:Stage I, alive, 586 days
67.7
TCGA-A4-7288-01A
0 years, female, white, stage:'--, alive, 1857 days
65.5
TCGA-EV-5902-01A
0 years, male, white, stage:Stage I, alive, 578 days
64.6
TCGA-DZ-6133-01A
0 years, female, white, stage:Stage I, dead, 1557 days
63.3
TCGA-IA-A40X-01A
0 years, female, black or african american, stage:Stage I, alive, 608 days
63.1
TCGA-A4-8098-01A
0 years, male, black or african american, stage:Stage I, alive, 896 days
62.3
TCGA-B1-A655-01A
0 years, female, white, stage:Stage I, alive, 510 days
62.0
TCGA-A4-8310-01A
0 years, male, white, stage:Stage III, alive, 780 days
58.0
TCGA-BQ-7051-01A
0 years, male, white, stage:Stage II, alive, 1533 days
56.8
TCGA-BQ-5887-01A
0 years, male, white, stage:Stage III, alive, 771 days
56.7
TCGA-BQ-7045-01A
0 years, male, black or african american, stage:Stage I, dead, 1468 days
55.9
TCGA-A4-7734-01A
0 years, female, white, stage:Stage I, alive, 27 days
55.7
TCGA-A4-7997-01A
0 years, male, white, stage:Stage I, alive, 927 days
55.5
TCGA-Y8-A8S0-01A
0 years, male, white, stage:Stage I, alive, 183 days
54.7
TCGA-UZ-A9Q0-01A
0 years, male, white, stage:Stage I, alive, 3368 days
54.7
TCGA-AT-A5NU-01A
0 years, male, white, stage:Stage I, alive, 67 days
54.0
TCGA-KV-A74V-01A
0 years, male, white, stage:Stage I, alive, 347 days
54.0
TCGA-P4-A5EB-01A
0 years, male, white, stage:Stage I, alive, 2477 days
53.0
TCGA-UZ-A9PP-01A
0 years, male, white, stage:Stage I, alive, 3010 days
52.0
TCGA-PJ-A5Z9-01A
0 years, female, white, stage:Stage I, alive, 540 days
52.0
TCGA-SX-A71U-01A
0 years, male, white, stage:Stage I, alive, 1357 days
50.6
TCGA-MH-A854-01A
0 years, female, black or african american, stage:Stage I, alive, 536 days
50.6
TCGA-G7-A8LC-01A
0 years, male, white, stage:Stage I, alive, 702 days
50.5
TCGA-P4-AAVK-01A
0 years, male, white, stage:Stage III, alive, 1590 days
50.1
TCGA-G7-A4TM-01A
0 years, male, black or african american, stage:Stage I, alive, 768 days
50.1
TCGA-DW-5560-01A
0 years, female, white, stage:Stage I, alive, 1486 days
50.0
TCGA-B3-3926-01A
0 years, female, white, stage:Stage I, alive, 883 days
49.9
TCGA-SX-A7SR-01A
0 years, male, white, stage:Stage II, alive, 805 days
49.6
TCGA-Y8-A894-01A
0 years, female, white, stage:Stage I, alive, 567 days
49.5
TCGA-A4-7583-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
49.4
TCGA-A4-A5DU-01A
0 years, female, white, stage:Stage I, alive, 496 days
48.6
TCGA-5P-A9KF-01A
0 years, male, white, stage:'--, alive, 845 days
48.5
TCGA-MH-A55W-01A
0 years, male, black or african american, stage:Stage I, alive, 1043 days
48.0
TCGA-Y8-A897-01A
0 years, female, white, stage:Stage I, alive, 549 days
47.9
TCGA-F9-A7VF-01A
0 years, female, white, stage:Stage I, alive, 73 days
47.9
TCGA-BQ-5879-01A
0 years, female, white, stage:Stage III, dead, 697 days
47.7
TCGA-P4-A5E8-01A
0 years, male, white, stage:Stage III, dead, 1306 days
47.4
TCGA-DW-7836-01A
0 years, male, white, stage:Stage I, alive, 1093 days
47.2
TCGA-5P-A9K0-01A
0 years, male, white, stage:'--, alive, 677 days
47.0
TCGA-5P-A9K8-01A
0 years, female, white, stage:'--, alive, 1309 days
46.7
TCGA-IA-A40U-01A
0 years, male, white, stage:Stage III, alive, 511 days
46.2
TCGA-SX-A71S-01A
0 years, female, white, stage:Stage I, alive, 1504 days
45.9
TCGA-UZ-A9PU-01A
0 years, male, white, stage:Stage I, dead, 933 days
45.5
TCGA-P4-AAVL-01A
0 years, male, white, stage:Stage III, dead, 487 days
45.4
TCGA-BQ-7050-01A
0 years, female, white, stage:Stage I, alive, 1864 days
45.3
TCGA-BQ-5891-01A
0 years, female, white, stage:Stage III, alive, 29 days
45.1
TCGA-2Z-A9JG-01A
0 years, male, white, stage:Stage I, alive, 1662 days
44.9
TCGA-J7-6720-01A
0 years, male, asian, stage:Stage I, alive, 388 days
44.9
TCGA-A4-A48D-01A
0 years, male, black or african american, stage:Stage I, alive, 379 days
44.5
TCGA-5P-A9JZ-01A
0 years, female, white, stage:'--, alive, 2744 days
44.3
TCGA-B3-3925-01A
0 years, male, white, stage:Stage III, alive, 1029 days
44.0
TCGA-A4-8516-01A
0 years, male, white, stage:Stage III, alive, 23 days
44.0
TCGA-B9-A5W8-01A
0 years, male, black or african american, stage:Stage II, alive, 524 days
43.8
TCGA-GL-A59R-01A
0 years, male, white, stage:Stage III, alive, 378 days
43.6
TCGA-2Z-A9JR-01A
0 years, male, white, stage:Stage I, alive, 161 days
43.5
TCGA-A4-A4ZT-01A
0 years, female, white, stage:Stage I, alive, 516 days
43.5
TCGA-5P-A9KE-01A
0 years, male, white, stage:'--, alive, 824 days
43.4
TCGA-SX-A71R-01A
0 years, male, white, stage:Stage I, alive, 1457 days
43.2
TCGA-5P-A9JY-01A
0 years, male, white, stage:'--, dead, 1508 days
43.1
TCGA-IZ-8196-01A
0 years, male, white, stage:Stage I, alive, 649 days
43.0
TCGA-F9-A97G-01A
0 years, male, asian, stage:Stage III, alive, 13 days
43.0
TCGA-HE-A5NH-01A
0 years, male, stage:Stage I, alive, 791 days
42.8
TCGA-DZ-6131-01A
0 years, male, white, stage:Stage III, alive, 2429 days
42.7
TCGA-MH-A561-01A
0 years, male, white, stage:Stage I, alive, 841 days
42.6
TCGA-B3-8121-01A
0 years, female, black or african american, stage:Stage I, alive, 379 days
42.6
TCGA-EV-5903-01A
0 years, male, white, stage:Stage I, alive, 757 days
42.4
TCGA-UN-AAZ9-01A
0 years, female, black or african american, stage:Stage I, alive, 548 days
42.4
TCGA-A4-A57E-01A
0 years, male, white, stage:Stage IV, dead, 258 days
42.4
TCGA-A4-8517-01A
0 years, male, white, stage:Stage I, alive, 597 days
42.4
TCGA-UZ-A9PZ-01A
0 years, male, white, stage:Stage III, alive, 657 days
42.4
TCGA-B1-5398-01A
0 years, male, white, stage:Stage III, alive, 1251 days
42.0
TCGA-2Z-A9JL-01A
0 years, male, black or african american, stage:Stage I, alive, 1006 days
42.0
TCGA-UZ-A9PL-01A
0 years, male, white, stage:Stage II, alive, 3152 days
42.0
TCGA-GL-A4EM-01A
0 years, male, white, stage:Stage I, alive, 32 days
41.9
TCGA-DW-7842-01A
0 years, male, white, stage:Stage I, alive, 92 days
41.9
TCGA-GL-7966-01A
0 years, female, white, stage:Stage III, alive, 112 days
41.9
TCGA-A4-A5XZ-01A
0 years, female, white, stage:Stage II, alive, 479 days
41.8
TCGA-P4-A5E7-01A
0 years, female, white, stage:Stage I, alive, 2649 days
41.7
TCGA-BQ-5894-01A
0 years, male, stage:Stage IV, alive, 84 days
41.7
TCGA-A4-7286-01A
0 years, male, white, stage:'--, alive, 554 days
41.5
TCGA-B9-A5W9-01A
0 years, male, white, stage:Stage I, alive, 5 days
41.2
TCGA-AL-3473-01A
0 years, male, white, stage:Stage II, alive, 1906 days
40.9
TCGA-B9-4116-01A
0 years, female, black or african american, stage:'--, alive, 627 days
40.8
TCGA-A4-8630-01A
0 years, female, white, stage:Stage I, alive, 436 days
40.7
TCGA-UZ-A9PX-01A
0 years, male, white, stage:Stage I, alive, 1981 days
40.7
TCGA-Y8-A895-01A
0 years, male, white, stage:Stage I, alive, 484 days
40.7
TCGA-2Z-A9J6-01A
0 years, male, white, stage:Stage I, alive, 1731 days
40.7
TCGA-IA-A40Y-01A
0 years, female, white, stage:Stage III, alive, 62 days
40.5
TCGA-B3-4103-01A
0 years, male, white, stage:Stage I, alive, 930 days
40.1
TCGA-5P-A9KC-01A
0 years, female, white, stage:'--, alive, 377 days
39.8
TCGA-Y8-A898-01A
0 years, male, white, stage:Stage I, alive, 475 days
39.8
TCGA-P4-A5E6-01A
0 years, male, black or african american, stage:Stage III, alive, 3035 days
39.8
TCGA-SX-A7SP-01A
0 years, female, white, stage:Stage I, dead, 496 days
39.8
TCGA-SX-A7SQ-01A
0 years, male, white, stage:Stage I, alive, 1266 days
39.7
TCGA-BQ-5877-01A
0 years, male, black or african american, stage:Stage IV, dead, 270 days
39.6
TCGA-Y8-A8RY-01A
0 years, male, white, stage:Stage I, alive, 769 days
39.5
TCGA-A4-7584-01A
0 years, male, black or african american, stage:Stage I, alive, 650 days
39.5
TCGA-GL-8500-01A
0 years, male, white, stage:Stage I, alive, 841 days
39.5
TCGA-EV-5901-01A
0 years, female, white, stage:Stage I, alive, 1040 days
39.4
TCGA-HE-A5NF-01A
0 years, male, stage:Stage I, alive, 2582 days
39.1
TCGA-UZ-A9PO-01A
0 years, male, white, stage:Stage I, alive, 1911 days
39.1
TCGA-UZ-A9PN-01A
0 years, male, white, stage:Stage III, dead, 1136 days
39.1
TCGA-UZ-A9PV-01A
0 years, male, white, stage:Stage I, alive, 1444 days
38.9
TCGA-UZ-A9PK-01A
0 years, male, white, stage:Stage I, alive, 3571 days
38.8
TCGA-IA-A83V-01A
0 years, male, white, stage:Stage I, dead, 2941 days
38.5
TCGA-A4-7585-01A
0 years, male, white, stage:Stage III, dead, 1070 days
38.5
TCGA-5P-A9KH-01A
0 years, male, white, stage:'--, alive, 2051 days
38.4
TCGA-UZ-A9PR-01A
0 years, male, white, stage:Stage I, alive, 2191 days
38.0
TCGA-B1-A47M-01A
0 years, male, black or african american, stage:Stage III, alive, 659 days
37.9
TCGA-A4-8515-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 709 days
37.6
TCGA-B1-A654-01A
0 years, female, black or african american, stage:Stage I, alive, 616 days
37.5
TCGA-BQ-5884-01A
0 years, female, black or african american, stage:Stage I, alive, 792 days
37.4
TCGA-B9-5156-01A
0 years, male, white, stage:'--, alive, 1338 days
37.4
TCGA-BQ-5878-01A
0 years, female, white, stage:Stage III, alive, 1938 days
37.3
TCGA-V9-A7HT-01A
0 years, male, black or african american, stage:Stage II, alive, 965 days
37.2
TCGA-UZ-A9PQ-01A
0 years, male, black or african american, stage:Stage III, dead, 2624 days
37.1
TCGA-BQ-7046-01A
0 years, male, white, stage:Stage I, alive, 2948 days
37.0
TCGA-BQ-5875-01A
0 years, female, white, stage:Stage III, alive, 2639 days
36.8
TCGA-UZ-A9PS-01A
0 years, female, black or african american, stage:Stage II, alive, 2167 days
36.8
TCGA-IZ-A6M9-01A
0 years, male, white, stage:Stage I, alive, 376 days
36.8
TCGA-B1-A657-01A
0 years, male, white, stage:Stage I, alive, 641 days
36.8
TCGA-G7-A8LE-01A
0 years, male, white, stage:Stage I, alive, 2453 days
36.7
TCGA-SX-A7SU-01A
0 years, male, stage:Stage I, alive, 1331 days
36.5
TCGA-SX-A71W-01A
0 years, male, white, stage:Stage I, alive, 1076 days
36.5
TCGA-F9-A7Q0-01A
0 years, female, asian, stage:Stage I, alive, 398 days
36.5
TCGA-HE-7129-01A
male, stage:Stage II, alive, 2492 days
36.5
TCGA-F9-A8NY-01A
0 years, female, asian, stage:Stage IV, alive, 36 days
36.3
TCGA-2Z-A9J1-01A
0 years, male, white, stage:Stage I, alive, 2298 days
35.4
TCGA-BQ-7062-01A
0 years, male, black or african american, stage:Stage I, alive, 116 days
35.4
TCGA-J7-8537-01A
0 years, female, asian, stage:Stage III, dead, 321 days
35.3
TCGA-BQ-7044-01A
0 years, male, white, stage:Stage III, alive, 3760 days
35.3
TCGA-2Z-A9JT-01A
0 years, male, white, stage:Stage I, alive, 684 days
35.3
TCGA-HE-A5NJ-01A
0 years, male, stage:'--, alive, 1726 days
35.2
TCGA-2Z-A9JJ-01A
0 years, female, white, stage:Stage I, alive, 1213 days
35.2
TCGA-B3-4104-01A
0 years, male, white, stage:Stage II, alive, 1049 days
35.2
TCGA-B9-4113-01A
0 years, male, black or african american, stage:Stage I, dead, 1536 days
35.0
TCGA-GL-7773-01A
0 years, male, white, stage:Stage I, alive, 393 days
34.8
TCGA-5P-A9K4-01A
0 years, male, white, stage:'--, alive, 2184 days
34.6
TCGA-SX-A7SN-01A
0 years, male, white, stage:Stage I, alive, 578 days
34.4
TCGA-BQ-7061-01A
0 years, female, white, stage:Stage I, alive, 218 days
34.2
TCGA-MH-A560-01A
0 years, male, white, stage:Stage I, alive, 924 days
34.0
TCGA-BQ-7060-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 214 days
34.0
TCGA-SX-A71V-01A
0 years, male, white, stage:Stage I, alive, 876 days
33.9
TCGA-P4-A5EA-01A
0 years, female, white, stage:Stage III, dead, 201 days
33.8
TCGA-SX-A7SM-01A
0 years, male, black or african american, stage:Stage IV, dead, 363 days
33.8
TCGA-5P-A9JW-01A
0 years, male, white, stage:'--, alive, 3241 days
33.7
TCGA-DZ-6132-01A
0 years, male, stage:Stage I, alive, 2460 days
33.7
TCGA-MH-A856-01A
0 years, male, white, stage:Stage I, alive, 947 days
33.6
TCGA-SX-A7SO-01A
0 years, male, white, stage:Stage I, alive, 1257 days
33.4
TCGA-2Z-A9JP-01A
0 years, male, white, stage:Stage I, alive, 893 days
33.3
TCGA-F9-A4JJ-01A
0 years, female, black or african american, stage:Stage III, dead, 325 days
33.2
TCGA-G7-6792-01A
0 years, male, black or african american, stage:Stage I, alive, 2765 days
33.2
TCGA-GL-6846-01A
0 years, male, white, stage:Stage IV, alive, 5925 days
33.0
TCGA-B3-A6W5-01A
0 years, male, black or african american, stage:Stage I, alive, 309 days
33.0
TCGA-BQ-7059-01A
0 years, male, white, stage:Stage I, alive, 232 days
32.9
TCGA-UZ-A9PJ-01A
0 years, male, white, stage:Stage I, dead, 797 days
32.9
TCGA-BQ-7048-01A
0 years, male, white, stage:Stage III, alive, 2839 days
32.7
TCGA-MH-A855-01A
0 years, female, black or african american, stage:Stage II, alive, 369 days
32.6
TCGA-DW-7840-01A
0 years, male, black or african american, stage:Stage I, alive, 114 days
32.5
TCGA-A4-7732-01A
0 years, male, black or african american, stage:'--, alive, 582 days
32.5
TCGA-BQ-7056-01A
0 years, female, white, stage:Stage III, alive, 612 days
32.4
TCGA-A4-8518-01A
0 years, male, white, stage:Stage I, alive, 600 days
32.4
TCGA-2Z-A9JS-01A
0 years, male, white, stage:Stage I, dead, 492 days
32.4
TCGA-B9-A8YH-01A
0 years, male, black or african american, stage:Stage I, alive, 532 days
32.4
TCGA-MH-A562-01A
0 years, male, black or african american, stage:Stage I, alive, 616 days
32.4
TCGA-A4-8311-01A
0 years, male, white, stage:Stage I, alive, 729 days
32.3
TCGA-B9-4117-01A
0 years, female, black or african american, stage:'--, alive, 14 days
32.0
TCGA-AL-A5DJ-01A
0 years, female, white, stage:Stage III, dead, 1498 days
32.0
TCGA-Y8-A8S1-01A
0 years, male, white, stage:Stage I, alive, 404 days
31.9
TCGA-B9-4114-01A
0 years, male, black or african american, stage:'--, alive, 857 days
31.9
TCGA-DW-7839-01A
0 years, female, white, stage:Stage I, alive, 419 days
31.8
TCGA-A4-7915-01A
0 years, female, black or african american, stage:Stage II, alive, 7 days
31.8
TCGA-BQ-5890-01A
0 years, male, white, stage:Stage III, alive, 233 days
31.7
TCGA-4A-A93W-01A
0 years, female, white, stage:Stage I, alive, 4 days
31.6
TCGA-UZ-A9Q1-01A
0 years, female, white, stage:Stage I, alive, 730 days
31.6
TCGA-BQ-7053-01A
0 years, female, black or african american, stage:Stage III, alive, 1516 days
31.4
TCGA-DW-7841-01A
0 years, male, black or african american, stage:Stage I, alive, 445 days
31.3
TCGA-5P-A9JU-01A
0 years, male, white, stage:Stage III, alive, 373 days
31.3
TCGA-HE-A5NL-01A
0 years, male, stage:Stage I, alive, 767 days
30.9
TCGA-IA-A83W-01A
0 years, male, white, stage:Stage I, dead, 2043 days
30.9
TCGA-2Z-A9J5-01A
0 years, male, white, stage:Stage II, alive, 3050 days
30.9
TCGA-DZ-6135-01A
0 years, male, stage:Stage I, alive, 2269 days
30.9
TCGA-G7-A8LB-01A
0 years, male, white, stage:Stage IV, alive, 547 days
30.7
TCGA-2Z-A9JK-01A
0 years, male, white, stage:Stage III, alive, 1186 days
30.7
TCGA-DW-5561-01A
0 years, male, black or african american, stage:Stage I, alive, 414 days
30.5
TCGA-IZ-A6M8-01A
0 years, male, black or african american, stage:Stage I, alive, 497 days
30.5
TCGA-A4-A5Y0-01A
0 years, female, white, stage:Stage I, alive, 252 days
30.5
TCGA-5P-A9JV-01A
0 years, male, white, stage:'--, alive, 2043 days
30.4
TCGA-B1-7332-01A
0 years, female, black or african american, stage:Stage II, alive, 1141 days
30.4
TCGA-P4-A5ED-01A
0 years, male, white, stage:Stage I, alive, 2816 days
30.1
TCGA-B9-A69E-01A
0 years, male, white, stage:Stage III, alive, 452 days
30.1
TCGA-2K-A9WE-01A
0 years, male, white, stage:Stage II, alive, 214 days
30.0
TCGA-BQ-5880-01A
0 years, male, white, stage:Stage III, dead, 1314 days
29.6
TCGA-BQ-7055-01A
0 years, male, white, stage:Stage I, alive, 799 days
29.6
TCGA-HE-A5NI-01A
0 years, male, stage:Stage I, alive, 360 days
29.5
TCGA-AL-3466-01A
0 years, male, white, stage:Stage IV, dead, 293 days
29.5
TCGA-KV-A6GD-01A
0 years, male, white, stage:Stage I, alive, 560 days
29.4
TCGA-2Z-A9JO-01A
0 years, female, black or african american, stage:Stage I, alive, 949 days
29.4
TCGA-B9-A44B-01A
0 years, male, black or african american, stage:Stage III, alive, 361 days
29.4
TCGA-BQ-5883-01A
0 years, female, black or african american, stage:Stage I, alive, 1242 days
29.2
TCGA-BQ-5882-01A
0 years, male, stage:Stage III, dead, 658 days
29.2
TCGA-B1-A47N-01A
0 years, male, white, stage:Stage I, alive, 1110 days
29.1
TCGA-5P-A9KA-01A
0 years, male, white, stage:'--, alive, 395 days
29.1
TCGA-DW-7838-01A
0 years, male, white, stage:Stage I, alive, 744 days
28.8
TCGA-AL-3468-01A
0 years, male, white, stage:Stage II, dead, 2331 days
28.6
TCGA-P4-AAVO-01A
0 years, male, white, stage:Stage I, alive, 2400 days
28.6
TCGA-BQ-5881-01A
0 years, male, white, stage:Stage I, alive, 1454 days
28.3
TCGA-IA-A83S-01A
0 years, male, white, stage:'--, dead, 2609 days
28.2
TCGA-G7-7501-01A
0 years, female, black or african american, stage:Stage III, dead, 624 days
27.9
TCGA-GL-A9DD-01A
0 years, male, white, stage:Stage I, alive, 341 days
27.9
TCGA-2Z-A9J3-01A
0 years, male, white, stage:Stage II, dead, 1771 days
27.8
TCGA-2Z-A9JM-01A
0 years, male, white, stage:Stage I, alive, 934 days
27.6
TCGA-GL-A59T-01A
0 years, male, white, stage:Stage I, alive, 546 days
27.6
TCGA-P4-AAVM-01A
0 years, male, white, stage:Stage I, alive, 1539 days
27.5
TCGA-B9-A5W7-01A
0 years, male, black or african american, stage:Stage I, alive, 585 days
27.5
TCGA-DW-7834-01A
0 years, male, white, stage:Stage I, alive, 3950 days
27.5
TCGA-AL-3472-01A
0 years, male, black or african american, stage:'--, alive, 2029 days
27.3
TCGA-5P-A9K6-01A
0 years, male, white, stage:'--, alive, 1914 days
27.3
TCGA-IZ-8195-01A
0 years, male, white, stage:Stage II, alive, 677 days
27.2
TCGA-PJ-A5Z8-01A
0 years, female, white, stage:Stage I, alive, 600 days
27.2
TCGA-A4-8312-01A
0 years, male, black or african american, stage:Stage I, alive, 708 days
27.2
TCGA-BQ-5885-01A
0 years, male, white, stage:Stage III, alive, 921 days
27.0
TCGA-2Z-A9J8-01A
0 years, male, white, stage:Stage I, alive, 2790 days
27.0
TCGA-DW-7837-01A
0 years, male, black or african american, stage:Stage I, alive, 1142 days
26.6
TCGA-GL-A9DE-01A
0 years, male, black or african american, stage:Stage I, alive, 496 days
26.4
TCGA-B9-4115-01A
0 years, male, black or african american, stage:Stage I, alive, 803 days
26.3
TCGA-2Z-A9JQ-01A
0 years, male, white, stage:Stage I, alive, 778 days
25.8
TCGA-G7-6789-01A
0 years, female, white, stage:Stage IV, dead, 122 days
25.7
TCGA-BQ-5889-01A
0 years, male, white, stage:Stage IV, dead, 329 days
25.7
TCGA-IA-A83T-01A
0 years, male, white, stage:'--, dead, 2684 days
25.6
TCGA-DZ-6134-01A
0 years, male, white, stage:Stage I, alive, 1856 days
25.0
TCGA-MH-A55Z-01A
0 years, male, black or african american, stage:Stage I, alive, 845 days
24.9
TCGA-Q2-A5QZ-01A
0 years, female, black or african american, stage:Stage III, alive, 428 days
24.6
TCGA-5P-A9K9-01A
0 years, female, white, stage:'--, dead, 589 days
24.4
TCGA-AL-3467-01A
0 years, female, white, stage:'--, alive, 2135 days
24.3
TCGA-G7-6793-01A
0 years, female, white, stage:Stage IV, dead, 336 days
23.9
TCGA-WN-AB4C-01A
0 years, female, white, stage:Stage I, alive, 1188 days
23.6
TCGA-BQ-7049-01A
0 years, female, white, stage:Stage I, dead, 1364 days
23.4
TCGA-HE-A5NK-01A
0 years, male, stage:'--, alive, 2228 days
23.1
TCGA-2Z-A9J7-01A
0 years, male, white, stage:Stage IV, dead, 139 days
23.1
TCGA-5P-A9K3-01A
0 years, male, white, stage:'--, dead, 471 days
23.0
TCGA-2Z-A9JD-01A
0 years, male, white, stage:Stage I, alive, 1060 days
22.7
TCGA-2Z-A9JE-01A
0 years, male, white, stage:Stage I, alive, 1728 days
22.5
TCGA-HE-7130-01A
female, stage:Stage III, alive, 1770 days
21.7
TCGA-A4-7287-01A
0 years, female, white, stage:Stage I, dead, 597 days
21.7
TCGA-G7-6795-01A
0 years, male, white, stage:Stage I, alive, 1194 days
21.6
TCGA-WN-A9G9-01A
0 years, male, white, stage:Stage I, alive, 791 days
21.5
TCGA-4A-A93X-01A
0 years, male, white, stage:Stage IV, alive, 390 days
21.5
TCGA-B1-A47O-01A
0 years, female, white, stage:Stage I, alive, 842 days
21.1
TCGA-2Z-A9J9-01A
0 years, male, black or african american, stage:Stage I, alive, 2294 days
21.1
TCGA-B9-4617-01A
0 years, male, black or african american, stage:'--, alive, 35 days
21.0
TCGA-BQ-5892-01A
0 years, male, white, stage:Stage I, alive, 364 days
21.0
TCGA-B9-5155-01A
0 years, male, white, stage:Stage III, alive, 665 days
20.8
TCGA-A4-7828-01A
0 years, female, black or african american, stage:Stage I, alive, 238 days
20.6
TCGA-4A-A93Y-01A
0 years, female, black or african american, stage:Stage II, alive, 352 days
20.1
TCGA-BQ-5888-01A
0 years, female, white, stage:Stage I, alive, 403 days
20.0
TCGA-BQ-5893-01A
0 years, male, white, stage:Stage IV, dead, 241 days
20.0
TCGA-B1-A656-01A
0 years, male, white, stage:Stage I, alive, 618 days
19.6
TCGA-AL-7173-01A
0 years, female, white, stage:Stage IV, alive, 2060 days
19.4
TCGA-2Z-A9JN-01A
0 years, female, black or african american, stage:Stage I, alive, 740 days
19.3
TCGA-BQ-5886-01A
0 years, male, white, stage:Stage III, alive, 792 days
19.2
TCGA-O9-A75Z-01A
0 years, male, white, stage:Stage I, alive, 471 days
19.1
TCGA-2Z-A9J2-01A
0 years, female, white, stage:Stage I, alive, 1795 days
17.6
TCGA-MH-A857-01A
0 years, male, black or african american, stage:Stage I, alive, 890 days
16.8
TCGA-UZ-A9PM-01A
0 years, male, white, stage:Stage II, alive, 3811 days
16.4
TCGA-Y8-A8RZ-01A
0 years, male, white, stage:Stage I, alive, 205 days
15.7
TCGA-SX-A7SS-01A
0 years, male, white, stage:Stage I, alive, 1615 days
14.7
TCGA-A4-A6HP-01A
0 years, male, white, stage:Stage I, alive, 379 days
14.6
TCGA-G7-6796-01A
0 years, male, white, stage:Stage I, alive, 2173 days
14.1
TCGA-B9-A8YI-01A
0 years, male, black or african american, stage:Stage I, alive, 374 days
13.6
TCGA-A4-A5Y1-01A
0 years, male, white, stage:Stage III, dead, 395 days
13.3
TCGA-KV-A6GE-01A
0 years, male, white, stage:Stage I, alive, 885 days
13.3
TCGA-J7-A8I2-01A
0 years, male, asian, stage:Stage I, alive, 307 days
11.9
TCGA-BQ-7058-01A
0 years, male, white, stage:Stage III, dead, 343 days
11.7
TCGA-2Z-A9JI-01A
0 years, male, white, stage:Stage III, alive, 1567 days
11.3
TCGA-5P-A9K2-01A
0 years, male, white, stage:'--, alive, 2392 days
11.2
TCGA-G7-A8LD-01A
0 years, male, white, stage:Stage III, dead, 514 days
6.7
TCGA-Y8-A896-01A
0 years, male, white, stage:Stage III, alive, 567 days
0.0
TCGA-AL-3471-01A
0 years, male, white, stage:Stage I, dead, 1500 days
0.0
Show allShow less
RENAL CELL CARCINOMA - Protein relative expression (CPTAC)
Number of samples
194
Samples
Sample ID
Sample type
nRPX
CPT0078930003
Tumor
1.5
CPT0089460004
Tumor
1.5
CPT0079180003
Tumor
1.5
CPT0078660003
Tumor
1.3
CPT0079510001
Normal
1.1
CPT0088970003
Tumor
0.9
CPT0077310003
Tumor
0.8
CPT0065750003
Tumor
0.8
CPT0087040003
Tumor
0.8
CPT0088480003
Tumor
0.8
CPT0089020003
Tumor
0.7
CPT0088550004
Tumor
0.7
CPT0007320003
Tumor
0.7
CPT0001220008
Tumor
0.6
CPT0014450004
Tumor
0.6
CPT0086030003
Tumor
0.6
CPT0063320003
Tumor
0.5
CPT0015910003
Tumor
0.5
CPT0071150004
Tumor
0.5
CPT0002270011
Tumor
0.5
CPT0026420001
Normal
0.5
CPT0078530001
Normal
0.5
CPT0012550003
Tumor
0.5
CPT0088500001
Normal
0.5
CPT0000890001
Normal
0.4
CPT0079480003
Tumor
0.4
CPT0015730003
Tumor
0.4
CPT0069160003
Tumor
0.4
CPT0086820003
Tumor
0.4
CPT0076350001
Normal
0.4
CPT0079000001
Normal
0.4
CPT0063640001
Normal
0.4
CPT0019130003
Tumor
0.3
CPT0014350001
Normal
0.3
CPT0002370001
Normal
0.3
CPT0088760003
Tumor
0.3
CPT0019160001
Normal
0.3
CPT0079270003
Tumor
0.3
CPT0081620001
Normal
0.3
CPT0092310003
Normal
0.3
CPT0007860003
Tumor
0.3
CPT0088710001
Normal
0.3
CPT0063630003
Tumor
0.3
CPT0078800003
Tumor
0.3
CPT0006950001
Normal
0.3
CPT0077140001
Normal
0.2
CPT0069010001
Normal
0.2
CPT0084590001
Normal
0.2
CPT0066480003
Tumor
0.2
CPT0012570003
Normal
0.2
CPT0089040001
Normal
0.2
CPT0069190001
Normal
0.2
CPT0020120003
Tumor
0.2
CPT0001270001
Normal
0.2
CPT0025610001
Normal
0.2
CPT0065430003
Tumor
0.2
CPT0086830003
Normal
0.2
CPT0069000003
Tumor
0.2
CPT0006440003
Tumor
0.2
CPT0079300001
Normal
0.2
CPT0000870016
Tumor
0.2
CPT0014160003
Tumor
0.2
CPT0001350001
Normal
0.2
CPT0013790003
Normal
0.2
CPT0066520001
Normal
0.2
CPT0078990003
Tumor
0.1
CPT0006630003
Tumor
0.1
CPT0006730001
Normal
0.1
CPT0087050003
Normal
0.1
CPT0001550001
Normal
0.1
CPT0001540009
Tumor
0.1
CPT0014130001
Normal
0.1
CPT0065450001
Normal
0.1
CPT0081990003
Tumor
0.1
CPT0001260009
Tumor
0.1
CPT0088780001
Normal
0.1
CPT0025880003
Tumor
0.1
CPT0014470001
Normal
0.1
CPT0084560003
Tumor
0.1
CPT0092730003
Tumor
0.1
CPT0014370004
Tumor
0.1
CPT0024670003
Tumor
0.1
CPT0000780007
Tumor
0.1
CPT0010120001
Normal
0.1
CPT0065870003
Tumor
0.1
CPT0088690003
Tumor
0.1
CPT0025050003
Tumor
0.0
CPT0092740003
Normal
0.0
CPT0006900003
Tumor
0.0
CPT0078510003
Tumor
0.0
CPT0000790001
Normal
0.0
CPT0020130001
Normal
0.0
CPT0015810003
Tumor
0.0
CPT0023710001
Normal
0.0
CPT0019990003
Tumor
0.0
CPT0023690003
Tumor
0.0
CPT0002350011
Tumor
0.0
CPT0025230003
Tumor
0.0
CPT0078670001
Normal
0.0
CPT0085670003
Tumor
0.0
CPT0076330003
Tumor
0.0
CPT0012370003
Tumor
0.0
CPT0075170001
Normal
0.0
CPT0025580004
Tumor
0.0
CPT0007470001
Normal
0.0
CPT0079230003
Tumor
0.0
CPT0010110003
Tumor
-0.1
CPT0079380003
Tumor
-0.1
CPT0023350003
Tumor
-0.1
CPT0012770003
Normal
-0.1
CPT0077320001
Normal
-0.1
CPT0025060001
Normal
-0.1
CPT0001180009
Tumor
-0.1
CPT0077500001
Normal
-0.1
CPT0075570001
Normal
-0.1
CPT0020020001
Normal
-0.1
CPT0088570001
Normal
-0.1
CPT0088920001
Normal
-0.2
CPT0086890003
Normal
-0.2
CPT0011240003
Tumor
-0.2
CPT0001340003
Tumor
-0.2
CPT0075560003
Tumor
-0.2
CPT0001190001
Normal
-0.2
CPT0089480003
Normal
-0.2
CPT0082010001
Normal
-0.2
CPT0000640003
Tumor
-0.2
CPT0081600003
Tumor
-0.2
CPT0063330001
Normal
-0.2
CPT0078830003
Tumor
-0.2
CPT0001230001
Normal
-0.2
CPT0078940001
Normal
-0.2
CPT0088900003
Tumor
-0.2
CPT0077490003
Tumor
-0.2
CPT0078840001
Normal
-0.2
CPT0025920001
Normal
-0.3
CPT0006530001
Normal
-0.3
CPT0023360001
Normal
-0.3
CPT0079410003
Tumor
-0.3
CPT0088640003
Normal
-0.3
CPT0007870001
Normal
-0.3
CPT0077110003
Tumor
-0.3
CPT0075130003
Tumor
-0.3
CPT0066430001
Normal
-0.3
CPT0088630003
Tumor
-0.4
CPT0024680001
Normal
-0.4
CPT0086870003
Tumor
-0.4
CPT0079430001
Normal
-0.4
CPT0000660001
Normal
-0.4
CPT0092290003
Tumor
-0.4
CPT0026410003
Tumor
-0.4
CPT0066470004
Tumor
-0.4
CPT0065820001
Normal
N/A
CPT0065690003
Tumor
N/A
CPT0012670003
Tumor
N/A
CPT0012920003
Normal
N/A
CPT0064370003
Tumor
N/A
CPT0025170003
Tumor
N/A
CPT0012640003
Normal
N/A
CPT0021240003
Tumor
N/A
CPT0092790003
Tumor
N/A
CPT0092190003
Normal
N/A
CPT0075720003
Tumor
N/A
CPT0017850003
Tumor
N/A
CPT0012900004
Tumor
N/A
CPT0001510001
Normal
N/A
CPT0086950003
Tumor
N/A
CPT0086360003
Tumor
N/A
CPT0011410003
Tumor
N/A
CPT0012080003
Tumor
N/A
CPT0009000003
Tumor
N/A
CPT0010170001
Normal
N/A
CPT0025110003
Tumor
N/A
CPT0012090003
Normal
N/A
CPT0009020003
Normal
N/A
CPT0001500009
Tumor
N/A
CPT0092160003
Tumor
N/A
CPT0065930003
Tumor
N/A
CPT0012180003
Tumor
N/A
CPT0017410003
Tumor
N/A
CPT0092800003
Normal
N/A
CPT0064400001
Normal
N/A
CPT0025290003
Tumor
N/A
CPT0018250001
Normal
N/A
CPT0017450001
Normal
N/A
CPT0010160003
Tumor
N/A
CPT0025350003
Tumor
N/A
CPT0012280003
Tumor
N/A
CPT0009080003
Normal
N/A
CPT0065810003
Tumor
N/A
CPT0086970003
Normal
N/A
CPT0081880003
Tumor
N/A
CPT0012290003
Normal
N/A
CPT0009060003
Tumor
N/A
CPT0086370003
Normal
N/A
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RENAL CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
