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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DEF8 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
95.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
58.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
44.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
43.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
42.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
42.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
40.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
39.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
36.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
34.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
34.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
33.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
32.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
32.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
32.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
32.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
31.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
31.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
31.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
30.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
30.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
30.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
29.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
29.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
28.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
28.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
28.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
27.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
27.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
26.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
25.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
25.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
25.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
25.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
25.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
24.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
24.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
23.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
23.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
22.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
22.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
22.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
22.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
22.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
21.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
21.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
21.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
21.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
20.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
20.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
19.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
19.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
19.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
19.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
16.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
14.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
13.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
11.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
10.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DEF8 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.4
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
51.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
45.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
44.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
42.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
41.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
27.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
24.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
23.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
21.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
21.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
21.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
13.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
1.3
553
Tumor
1.0
428
Normal
0.9
515
Tumor
0.9
527
Tumor
0.8
516
Normal
0.8
432
Normal
0.7
524
Normal
0.7
414
Normal
0.7
526
Normal
0.7
426
Normal
0.6
424
Normal
0.6
481
Tumor
0.6
222
Normal
0.6
514
Normal
0.6
422
Normal
0.6
851
Tumor
0.6
571
Tumor
0.5
914
Normal
0.5
427
Tumor
0.5
568
Normal
0.5
413
Tumor
0.5
912
Normal
0.5
858
Normal
0.5
518
Normal
0.4
423
Tumor
0.4
361
Tumor
0.4
517
Tumor
0.4
882
Normal
0.4
421
Tumor
0.4
884
Normal
0.4
191
Tumor
0.4
635
Tumor
0.4
217
Tumor
0.4
857
Tumor
0.4
818
Normal
0.4
425
Tumor
0.3
474
Normal
0.3
537
Tumor
0.3
627
Tumor
0.3
878
Normal
0.3
913
Tumor
0.3
815
Tumor
0.3
572
Normal
0.3
367
Tumor
0.3
376
Normal
0.3
918
Normal
0.2
824
Normal
0.2
214
Normal
0.2
1015
Tumor
0.2
723
Tumor
0.2
538
Normal
0.2
446
Normal
0.2
1041
Tumor
0.2
1042
Normal
0.2
911
Tumor
0.2
1028
Normal
0.2
816
Normal
0.2
1022
Normal
0.2
1027
Tumor
0.2
482
Normal
0.2
145
Tumor
0.2
534
Normal
0.2
852
Normal
0.2
196
Normal
0.2
472
Normal
0.2
564
Normal
0.2
546
Normal
0.1
523
Tumor
0.1
513
Tumor
0.1
1026
Normal
0.1
926
Normal
0.1
724
Normal
0.1
528
Normal
0.1
574
Normal
0.1
218
Normal
0.1
383
Tumor
0.1
525
Tumor
0.1
554
Normal
0.1
132
Normal
0.1
742
Normal
0.1
221
Tumor
0.1
922
Normal
0.1
136
Normal
0.0
213
Tumor
0.0
744
Normal
0.0
917
Tumor
0.0
981
Tumor
0.0
146
Normal
0.0
434
Normal
0.0
192
Normal
0.0
1016
Normal
-0.1
915
Tumor
-0.1
436
Normal
-0.1
462
Normal
-0.1
983
Tumor
-0.1
433
Tumor
-0.1
558
Normal
-0.1
977
Tumor
-0.1
728
Normal
-0.1
881
Tumor
-0.1
137
Tumor
-0.1
1032
Normal
-0.1
142
Normal
-0.1
738
Normal
-0.1
138
Normal
-0.1
1025
Tumor
-0.1
461
Tumor
-0.2
916
Normal
-0.2
743
Tumor
-0.2
444
Normal
-0.2
1013
Tumor
-0.2
641
Tumor
-0.2
823
Tumor
-0.2
924
Normal
-0.2
982
Normal
-0.2
1021
Tumor
-0.2
135
Tumor
-0.2
195
Tumor
-0.3
563
Tumor
-0.3
141
Tumor
-0.3
131
Tumor
-0.3
817
Tumor
-0.3
545
Tumor
-0.3
921
Tumor
-0.3
741
Tumor
-0.3
883
Tumor
-0.3
471
Tumor
-0.3
984
Normal
-0.4
557
Tumor
-0.4
615
Tumor
-0.4
1014
Normal
-0.4
567
Tumor
-0.4
573
Tumor
-0.4
1031
Tumor
-0.4
737
Tumor
-0.4
727
Tumor
-0.4
636
Normal
-0.4
478
Normal
-0.5
366
Normal
-0.5
877
Tumor
-0.5
443
Tumor
-0.5
628
Normal
-0.5
477
Tumor
-0.5
617
Tumor
-0.5
925
Tumor
-0.5
435
Tumor
-0.6
978
Normal
-0.7
923
Tumor
-0.7
642
Normal
-0.7
365
Tumor
-0.7
616
Normal
-0.8
368
Normal
-0.9
445
Tumor
-0.9
618
Normal
-1.0
375
Tumor
-1.0
362
Normal
-1.1
384
Normal
-1.1
431
Tumor
-1.2
473
Tumor
-1.5
351
Tumor
N/A
231
Tumor
N/A
352
Normal
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
494
Normal
N/A
497
Tumor
N/A
498
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
937
Tumor
N/A
938
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
944
Normal
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
951
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
965
Tumor
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
861
Tumor
N/A
862
Normal
N/A
863
Tumor
N/A
1046
Normal
N/A
864
Normal
N/A
1045
Tumor
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
755
Tumor
N/A
756
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
785
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
666
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
447
Tumor
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
451
Tumor
N/A
331
Tumor
N/A
452
Normal
N/A
211
Tumor
N/A
332
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
455
Tumor
N/A
697
Tumor
N/A
456
Normal
N/A
698
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
