MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.3 nTPM
HPA Brain:10.6 nTPM
GTEx:8.3 nTPM
FANTOM5:8.5 Scaled Tags Per Million
Pig:15.7 nTPM
Mouse:8.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 10.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.3
1827 Male, age 72, unknown 10.7
2219 Male, age 76, both hemispheres 10.1
1833 Male, age 53, unknown 9.8
2586 Male, age 75, left hemisphere 9.4
2828 Female, age 72, unknown 9.4
1870 Female, age 42, unknown 9.1
2411 Female, age 72, unknown 9.1
2019 Male, age 18, unknown 8.8
1830 Male, age 51, unknown 8.6
2666 Male, age 74, left hemisphere 7.9
Dorsal raphe nucleus
nTPM: 10.6
2298 Female, age 72, unknown 11.6
2750 Male, age 76, both hemispheres 11.3
2047 Male, age 72, unknown 10.9
1828 Male, age 53, unknown 9.6
2016 Female, age 72, unknown 9.4
Inferior colliculus
nTPM: 10.1
1848 Female, age 42, unknown 10.7
2849 Male, age 72, unknown 10.3
1890 Male, age 53, unknown 9.7
2097 Female, age 72, unknown 9.4
Median raphe nucleus
nTPM: 9.1
2220 Male, age 76, midline 9.1
Periaquaductal grey, anterior
nTPM: 9.7
1947 Male, age 18, unknown 11.1
1795 Male, age 51, unknown 9.7
2502 Female, age 75, unknown 8.3
Periaquaductal grey, dorsal
nTPM: 9.5
1831 Male, age 72, unknown 10.5
2464 Female, age 72, unknown 10.1
1840 Male, age 53, unknown 8.9
2850 Male, age 76, both hemispheres 8.4
Periaquaductal grey, lateral
nTPM: 10.6
2272 Male, age 74, both hemispheres 12.5
2140 Male, age 76, both hemispheres 9.7
2053 Male, age 18, unknown 9.4
Pretectal area
nTPM: 10.4
2667 Female, age 75, unknown 13.2
2224 Female, age 72, unknown 12.4
1817 Female, age 42, unknown 11.6
1816 Male, age 51, unknown 11.5
2825 Male, age 18, unknown 11.1
1944 Female, age 72, unknown 10.8
2273 Male, age 74, both hemispheres 9.7
1815 Male, age 53, unknown 8.9
2007 Male, age 72, unknown 8.6
2316 Male, age 76, right hemisphere 8.4
2407 Male, age 75, both hemispheres 7.9
Red nucleus
nTPM: 8.3
1865 Male, age 51, unknown 9.3
1904 Male, age 53, unknown 8.9
2823 Male, age 76, right hemisphere 8.8
1821 Female, age 72, unknown 8.7
2584 Male, age 75, left hemisphere 8.7
2588 Male, age 74, left hemisphere 8.6
1954 Female, age 42, unknown 8.4
2725 Female, age 75, unknown 7.8
2227 Male, age 72, unknown 7.7
2503 Female, age 72, unknown 7.7
2769 Male, age 72, unknown 7.7
2785 Male, age 18, unknown 7.3
Substantia nigra
nTPM: 10.4
2241 Male, age 72, unknown 12.5
2409 Female, age 72, unknown 11.9
1889 Female, age 72, unknown 10.3
1851 Male, age 51, unknown 10.2
1941 Male, age 53, unknown 10.2
2665 Male, age 74, both hemispheres 10.1
2699 Male, age 18, unknown 10.0
1916 Female, age 42, unknown 9.8
2583 Male, age 75, right hemisphere 9.6
2590 Female, age 75, unknown 9.4
Superior colliculus
nTPM: 9.2
2261 Male, age 18, unknown 10.1
2087 Female, age 72, unknown 10.0
1796 Male, age 53, unknown 9.9
1895 Male, age 76, right hemisphere 9.8
2668 Female, age 75, unknown 9.6
2587 Male, age 74, left hemisphere 9.5
1913 Female, age 42, unknown 9.4
1839 Male, age 51, unknown 8.3
2664 Male, age 75, both hemispheres 8.0
1995 Male, age 72, unknown 7.5
Ventral tegmental area
nTPM: 9.3
2021 Male, age 53, unknown 10.7
1915 Female, age 42, unknown 9.6
2218 Male, age 76, both hemispheres 9.4
2223 Female, age 72, unknown 9.0
1942 Male, age 51, unknown 8.9
2410 Female, age 72, unknown 8.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 8.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.3
Samples: 139

Max nTPM: 18.6
Min nTPM: 2.8
Std nTPM: 2.6
Median nTPM: 8.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 18.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 17.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 16.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 15.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 14.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 14.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 13.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 12.9
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 12.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 12.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 12.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 8.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.5
FF:10158-103A5 76 years, female 8.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 15.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.7
Samples: 4

Max nTPM: 11.6
Min nTPM: 9.2
Sample A Female 10.3
Sample B Female 11.5
Sample C Male 9.2
Sample D Male 11.6
Midbrain
nTPM: 14.2
Samples: 4

Max nTPM: 21.3
Min nTPM: 10.2
Sample A Female 10.2
Sample B Female 10.7
Sample C Male 21.3
Sample D Male 14.7
Periaqueductal gray
nTPM: 11.4
Samples: 3

Max nTPM: 12.4
Min nTPM: 10.3
Sample B Female 12.4
Sample C Male 10.3
Sample D Male 11.6
Superior colliculi
nTPM: 15.7
Samples: 4

Max nTPM: 19.4
Min nTPM: 14.2
Sample A Female 14.2
Sample B Female 14.5
Sample C Male 19.4
Sample D Male 14.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 8.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.4
Samples: 4

Max nTPM: 9.6
Min nTPM: 6.6
Sample A Male 7.9
Sample B Male 9.6
Sample C Female 9.6
Sample D Female 6.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
74427085 Antisense, RP_051206_03_A08, Mouse strain C57BL/6J (56 days, male) 0.0

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