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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IQGAP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
70.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
55.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
52.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
37.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
27.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
2.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
2.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IQGAP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.6
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
89.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
85.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
60.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
53.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
45.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
44.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
41.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
40.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
38.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
34.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
34.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
34.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
34.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
33.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
32.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
32.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
31.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
29.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
28.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
27.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
27.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
27.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
26.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
25.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
25.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
24.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
24.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
24.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
23.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
20.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
311
Tumor
1.1
211
Tumor
0.9
917
Tumor
0.9
434
Normal
0.8
536
Normal
0.8
192
Normal
0.8
478
Normal
0.7
444
Normal
0.7
124
Normal
0.7
492
Normal
0.7
126
Normal
0.7
524
Normal
0.7
538
Normal
0.6
661
Tumor
0.6
283
Tumor
0.6
146
Normal
0.6
224
Normal
0.6
262
Normal
0.6
978
Normal
0.5
498
Normal
0.5
916
Normal
0.5
686
Normal
0.5
467
Tumor
0.5
491
Tumor
0.5
1028
Normal
0.5
268
Normal
0.5
966
Normal
0.5
672
Normal
0.5
814
Normal
0.5
188
Normal
0.5
954
Normal
0.4
213
Tumor
0.4
284
Normal
0.4
138
Normal
0.4
778
Normal
0.4
716
Normal
0.4
352
Normal
0.4
384
Normal
0.4
362
Normal
0.4
447
Tumor
0.4
344
Normal
0.4
421
Tumor
0.4
455
Tumor
0.4
852
Normal
0.4
1044
Normal
0.4
984
Normal
0.4
721
Tumor
0.4
212
Normal
0.4
724
Normal
0.4
976
Normal
0.4
558
Normal
0.3
943
Tumor
0.3
195
Tumor
0.3
415
Tumor
0.3
368
Normal
0.3
662
Normal
0.3
528
Normal
0.3
343
Tumor
0.3
272
Normal
0.3
375
Tumor
0.3
713
Tumor
0.3
952
Normal
0.3
312
Normal
0.3
628
Normal
0.3
214
Normal
0.3
386
Normal
0.3
958
Normal
0.3
185
Tumor
0.3
516
Normal
0.3
432
Normal
0.3
125
Tumor
0.3
816
Normal
0.3
914
Normal
0.3
136
Normal
0.3
696
Normal
0.3
218
Normal
0.2
392
Normal
0.2
1042
Normal
0.2
383
Tumor
0.2
956
Normal
0.2
366
Normal
0.2
142
Normal
0.2
111
Normal
0.2
217
Tumor
0.2
114
Normal
0.2
332
Normal
0.2
823
Tumor
0.2
535
Tumor
0.2
494
Normal
0.2
364
Normal
0.2
881
Tumor
0.2
874
Normal
0.2
396
Normal
0.2
354
Normal
0.2
738
Normal
0.2
728
Normal
0.2
918
Normal
0.2
666
Normal
0.2
857
Tumor
0.2
286
Normal
0.2
468
Normal
0.2
563
Tumor
0.2
817
Tumor
0.2
813
Tumor
0.2
786
Normal
0.2
412
Normal
0.2
744
Normal
0.2
424
Normal
0.2
574
Normal
0.2
385
Tumor
0.2
394
Normal
0.2
926
Normal
0.2
145
Tumor
0.2
297
Tumor
0.2
416
Normal
0.2
884
Normal
0.2
223
Tumor
0.2
456
Normal
0.2
968
Normal
0.2
851
Tumor
0.2
191
Tumor
0.1
356
Normal
0.1
518
Normal
0.1
526
Normal
0.1
664
Normal
0.1
924
Normal
0.1
461
Tumor
0.1
864
Normal
0.1
376
Normal
0.1
488
Normal
0.1
141
Tumor
0.1
866
Normal
0.1
474
Normal
0.1
922
Normal
0.1
742
Normal
0.1
363
Tumor
0.1
868
Normal
0.1
714
Normal
0.1
1015
Tumor
0.1
963
Tumor
0.1
172
Normal
0.1
975
Tumor
0.1
514
Normal
0.1
388
Normal
0.1
278
Normal
0.1
414
Normal
0.1
1026
Normal
0.1
258
Normal
0.1
944
Normal
0.1
878
Normal
0.1
818
Normal
0.1
448
Normal
0.1
228
Normal
0.1
938
Normal
0.1
148
Normal
0.1
1016
Normal
0.1
422
Normal
0.1
355
Tumor
0.1
1014
Normal
0.1
636
Normal
0.1
572
Normal
0.1
722
Normal
0.1
427
Tumor
0.0
446
Normal
0.0
862
Normal
0.0
955
Tumor
0.0
1032
Normal
0.0
882
Normal
0.0
858
Normal
0.0
964
Normal
0.0
162
Normal
0.0
1046
Normal
0.0
232
Normal
0.0
365
Tumor
0.0
328
Normal
0.0
466
Normal
0.0
723
Tumor
0.0
671
Tumor
0.0
187
Tumor
0.0
196
Normal
0.0
756
Normal
0.0
1022
Normal
0.0
298
Normal
0.0
395
Tumor
0.0
697
Tumor
0.0
554
Normal
0.0
867
Tumor
0.0
982
Normal
0.0
824
Normal
0.0
525
Tumor
0.0
913
Tumor
0.0
128
Normal
0.0
568
Normal
0.0
493
Tumor
0.0
391
Tumor
0.0
132
Normal
0.0
472
Normal
0.0
861
Tumor
0.0
464
Normal
0.0
698
Normal
0.0
342
Normal
0.0
314
Normal
0.0
433
Tumor
0.0
573
Tumor
0.0
1045
Tumor
-0.1
135
Tumor
-0.1
462
Normal
-0.1
534
Normal
-0.1
616
Normal
-0.1
912
Normal
-0.1
546
Normal
-0.1
642
Normal
-0.1
617
Tumor
-0.1
564
Normal
-0.1
358
Normal
-0.1
925
Tumor
-0.1
428
Normal
-0.1
426
Normal
-0.1
367
Tumor
-0.1
641
Tumor
-0.1
186
Normal
-0.1
482
Normal
-0.1
746
Normal
-0.1
261
Tumor
-0.1
648
Normal
-0.1
222
Normal
-0.1
452
Normal
-0.1
471
Tumor
-0.2
137
Tumor
-0.2
618
Normal
-0.2
715
Tumor
-0.2
557
Tumor
-0.2
953
Tumor
-0.2
883
Tumor
-0.2
1031
Tumor
-0.2
983
Tumor
-0.2
423
Tumor
-0.2
785
Tumor
-0.2
545
Tumor
-0.2
484
Normal
-0.2
815
Tumor
-0.2
387
Tumor
-0.3
451
Tumor
-0.3
331
Tumor
-0.3
327
Tumor
-0.3
161
Tumor
-0.3
413
Tumor
-0.3
481
Tumor
-0.3
483
Tumor
-0.3
436
Normal
-0.3
923
Tumor
-0.3
527
Tumor
-0.3
463
Tumor
-0.3
353
Tumor
-0.3
271
Tumor
-0.3
685
Tumor
-0.4
113
Tumor
-0.4
863
Tumor
-0.4
665
Tumor
-0.4
1043
Tumor
-0.4
553
Tumor
-0.4
873
Tumor
-0.4
277
Tumor
-0.4
627
Tumor
-0.4
231
Tumor
-0.4
537
Tumor
-0.4
937
Tumor
-0.5
877
Tumor
-0.5
361
Tumor
-0.5
727
Tumor
-0.5
921
Tumor
-0.5
663
Tumor
-0.5
221
Tumor
-0.5
443
Tumor
-0.5
615
Tumor
-0.5
915
Tumor
-0.5
737
Tumor
-0.5
285
Tumor
-0.5
411
Tumor
-0.5
951
Tumor
-0.6
515
Tumor
-0.6
445
Tumor
-0.6
497
Tumor
-0.6
313
Tumor
-0.6
341
Tumor
-0.6
695
Tumor
-0.6
257
Tumor
-0.6
567
Tumor
-0.6
127
Tumor
-0.6
1027
Tumor
-0.6
755
Tumor
-0.6
227
Tumor
-0.6
977
Tumor
-0.6
487
Tumor
-0.7
147
Tumor
-0.7
1013
Tumor
-0.7
647
Tumor
-0.7
1025
Tumor
-0.7
431
Tumor
-0.7
981
Tumor
-0.7
1041
Tumor
-0.7
357
Tumor
-0.7
571
Tumor
-0.8
777
Tumor
-0.8
865
Tumor
-0.8
965
Tumor
-0.8
477
Tumor
-0.8
957
Tumor
-0.8
171
Tumor
-0.8
523
Tumor
-0.8
967
Tumor
-0.8
267
Tumor
-0.8
513
Tumor
-0.8
425
Tumor
-0.8
473
Tumor
-0.9
743
Tumor
-0.9
741
Tumor
-0.9
1021
Tumor
-0.9
351
Tumor
-0.9
131
Tumor
-0.9
517
Tumor
-0.9
112
Tumor
-0.9
393
Tumor
-0.9
533
Tumor
-0.9
911
Tumor
-1.0
465
Tumor
-1.0
745
Tumor
-1.0
123
Tumor
-1.1
635
Tumor
-1.2
435
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
