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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCAMP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
98.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
87.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
68.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
67.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
65.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
65.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
64.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
61.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
60.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
60.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
59.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
59.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
59.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
58.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
58.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
58.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
58.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
57.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
55.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
55.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
54.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
53.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
53.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
53.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
53.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
53.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
52.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
52.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
52.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
49.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
49.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
48.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
48.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
48.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
48.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
47.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
47.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
47.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
47.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
47.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
46.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
46.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
46.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
46.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
46.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
46.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
46.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
45.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
45.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
45.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
45.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
45.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
45.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
45.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
45.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
45.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
44.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
44.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
44.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
44.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
43.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
43.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
43.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
43.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
43.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
43.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
42.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
42.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
42.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
42.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
42.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
42.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
41.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
41.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
41.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
40.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
40.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
40.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
40.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
40.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
39.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
39.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
39.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
39.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
38.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
38.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
38.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
38.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
38.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
37.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
37.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
37.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
37.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
37.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
37.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
37.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
36.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
36.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
36.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
36.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
36.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
36.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
36.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
36.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
36.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
36.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
36.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
36.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
36.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
36.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
35.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
35.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
35.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
35.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
35.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
35.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
34.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
34.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
34.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
34.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
34.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
34.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
34.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
34.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
34.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
33.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
33.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
33.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
33.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
33.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
33.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
33.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
33.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
33.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
33.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
32.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
32.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
32.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
32.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
32.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
32.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
32.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
32.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
32.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
32.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
32.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
31.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
31.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
31.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
31.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
31.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
31.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
31.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
31.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
31.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
31.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
31.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
31.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
31.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
31.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
31.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
30.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
30.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
30.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
30.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
30.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
29.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
29.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
29.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
29.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
29.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
29.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
29.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
29.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
29.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
29.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
29.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
29.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
28.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
28.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
28.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
28.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
28.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
28.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
28.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
28.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
28.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
27.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
27.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
27.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
27.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
27.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
27.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
27.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
27.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
27.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
27.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
26.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
26.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
26.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
26.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
26.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
26.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
26.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
26.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
26.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
26.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
26.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
26.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
25.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
25.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
25.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
25.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
25.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
25.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
25.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
25.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
25.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
24.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
24.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
24.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
24.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
24.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
24.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
24.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
24.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
23.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
23.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
23.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
23.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
23.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
23.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
23.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
23.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
23.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
23.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
22.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
22.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
22.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
22.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
22.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
22.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
22.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
22.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
21.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
21.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
21.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
21.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
21.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
20.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
20.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
20.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
20.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
20.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
19.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
19.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
19.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
19.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
19.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
19.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
18.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
17.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
17.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
16.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
16.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
12.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCAMP2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.3
Number of samples
231
Samples
Sample
Description
TPM
DO45267
0 years, male, NA, stage:3, dead, 570 days
89.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
76.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
69.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
68.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
61.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
58.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
56.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
55.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
53.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
50.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
50.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
49.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
49.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
48.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
48.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
48.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
48.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
47.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
46.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
46.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
42.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
42.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
42.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
41.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
41.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
41.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
40.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
40.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
40.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
40.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
40.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
39.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
39.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
39.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
39.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
39.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
39.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
39.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
39.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
38.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
38.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
38.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
38.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
38.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
38.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
37.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
37.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
37.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
36.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
36.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
35.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
35.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
35.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
35.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
35.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
35.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
35.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
35.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
35.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
34.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
34.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
34.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
34.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
34.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
33.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
33.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
33.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
33.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
33.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
33.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
32.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
32.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
32.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
32.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
32.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
32.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
32.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
31.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
31.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
31.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
31.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
31.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
31.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
31.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
31.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
31.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
30.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
30.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
30.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
30.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
30.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
30.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
29.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
29.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
29.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
29.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
29.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
29.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
29.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
29.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
29.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
29.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
29.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
28.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
28.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
28.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
28.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
28.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
28.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
28.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
28.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
28.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
28.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
27.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
27.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
27.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
27.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
27.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
27.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
27.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
27.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
26.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
26.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
26.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
26.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
26.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
26.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
26.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
26.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
26.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
26.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
26.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
26.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
26.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
25.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
25.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
25.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
25.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
25.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
25.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
24.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
24.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
24.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
24.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
24.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
23.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
23.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
23.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
23.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
22.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
22.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
22.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
21.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
21.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
20.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
20.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
20.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
951
Tumor
1.0
343
Tumor
1.0
135
Tumor
0.9
937
Tumor
0.9
1027
Tumor
0.8
697
Tumor
0.8
635
Tumor
0.7
231
Tumor
0.7
421
Tumor
0.7
685
Tumor
0.7
455
Tumor
0.7
813
Tumor
0.7
271
Tumor
0.6
925
Tumor
0.6
823
Tumor
0.6
1025
Tumor
0.6
527
Tumor
0.6
553
Tumor
0.6
745
Tumor
0.6
814
Normal
0.6
471
Tumor
0.6
815
Tumor
0.5
211
Tumor
0.5
641
Tumor
0.5
357
Tumor
0.5
863
Tumor
0.5
467
Tumor
0.5
375
Tumor
0.5
385
Tumor
0.5
387
Tumor
0.5
443
Tumor
0.4
425
Tumor
0.4
367
Tumor
0.4
545
Tumor
0.4
283
Tumor
0.4
537
Tumor
0.4
524
Normal
0.4
917
Tumor
0.4
185
Tumor
0.4
715
Tumor
0.4
517
Tumor
0.4
661
Tumor
0.4
567
Tumor
0.4
127
Tumor
0.4
557
Tumor
0.4
461
Tumor
0.4
227
Tumor
0.4
1031
Tumor
0.4
881
Tumor
0.4
921
Tumor
0.4
311
Tumor
0.4
473
Tumor
0.4
851
Tumor
0.4
257
Tumor
0.4
267
Tumor
0.4
493
Tumor
0.3
627
Tumor
0.3
817
Tumor
0.3
447
Tumor
0.3
1021
Tumor
0.3
983
Tumor
0.3
1015
Tumor
0.3
526
Normal
0.3
141
Tumor
0.3
483
Tumor
0.3
285
Tumor
0.3
671
Tumor
0.3
785
Tumor
0.3
171
Tumor
0.3
721
Tumor
0.3
492
Normal
0.3
444
Normal
0.3
433
Tumor
0.3
963
Tumor
0.3
413
Tumor
0.3
695
Tumor
0.3
665
Tumor
0.3
977
Tumor
0.3
123
Tumor
0.3
138
Normal
0.3
395
Tumor
0.2
535
Tumor
0.2
563
Tumor
0.2
877
Tumor
0.2
213
Tumor
0.2
463
Tumor
0.2
391
Tumor
0.2
487
Tumor
0.2
434
Normal
0.2
722
Normal
0.2
125
Tumor
0.2
445
Tumor
0.2
525
Tumor
0.2
137
Tumor
0.2
1041
Tumor
0.2
755
Tumor
0.2
268
Normal
0.2
351
Tumor
0.2
221
Tumor
0.2
297
Tumor
0.2
187
Tumor
0.2
975
Tumor
0.2
262
Normal
0.2
913
Tumor
0.2
124
Normal
0.2
737
Tumor
0.2
743
Tumor
0.1
883
Tumor
0.1
147
Tumor
0.1
354
Normal
0.1
617
Tumor
0.1
574
Normal
0.1
1045
Tumor
0.1
536
Normal
0.1
363
Tumor
0.1
131
Tumor
0.1
368
Normal
0.1
777
Tumor
0.1
383
Tumor
0.1
277
Tumor
0.1
411
Tumor
0.1
223
Tumor
0.1
427
Tumor
0.1
516
Normal
0.1
384
Normal
0.1
331
Tumor
0.1
538
Normal
0.1
477
Tumor
0.1
358
Normal
0.1
355
Tumor
0.1
415
Tumor
0.1
341
Tumor
0.1
451
Tumor
0.1
926
Normal
0.1
258
Normal
0.1
436
Normal
0.1
146
Normal
0.1
491
Tumor
0.1
422
Normal
0.1
956
Normal
0.1
573
Tumor
0.1
965
Tumor
0.1
424
Normal
0.1
554
Normal
0.1
446
Normal
0.1
744
Normal
0.1
145
Tumor
0.0
647
Tumor
0.0
966
Normal
0.0
952
Normal
0.0
916
Normal
0.0
713
Tumor
0.0
515
Tumor
0.0
431
Tumor
0.0
1043
Tumor
0.0
112
Tumor
0.0
313
Tumor
0.0
217
Tumor
0.0
911
Tumor
0.0
672
Normal
0.0
136
Normal
0.0
523
Tumor
0.0
393
Tumor
0.0
546
Normal
0.0
478
Normal
0.0
967
Tumor
0.0
366
Normal
0.0
955
Tumor
0.0
312
Normal
0.0
724
Normal
0.0
188
Normal
0.0
161
Tumor
0.0
284
Normal
0.0
172
Normal
0.0
778
Normal
0.0
432
Normal
0.0
943
Tumor
0.0
261
Tumor
0.0
857
Tumor
0.0
212
Normal
0.0
365
Tumor
0.0
914
Normal
0.0
518
Normal
0.0
224
Normal
0.0
132
Normal
0.0
686
Normal
0.0
514
Normal
0.0
976
Normal
0.0
663
Tumor
0.0
414
Normal
0.0
513
Tumor
0.0
232
Normal
0.0
482
Normal
0.0
636
Normal
0.0
462
Normal
0.0
192
Normal
0.0
456
Normal
0.0
142
Normal
0.0
923
Tumor
-0.1
423
Tumor
-0.1
344
Normal
-0.1
861
Tumor
-0.1
497
Tumor
-0.1
362
Normal
-0.1
957
Tumor
-0.1
571
Tumor
-0.1
228
Normal
-0.1
912
Normal
-0.1
452
Normal
-0.1
498
Normal
-0.1
1028
Normal
-0.1
361
Tumor
-0.1
428
Normal
-0.1
352
Normal
-0.1
111
Normal
-0.1
953
Tumor
-0.1
666
Normal
-0.1
191
Tumor
-0.1
741
Tumor
-0.1
954
Normal
-0.1
186
Normal
-0.1
286
Normal
-0.1
278
Normal
-0.1
944
Normal
-0.1
332
Normal
-0.1
376
Normal
-0.1
468
Normal
-0.1
662
Normal
-0.1
873
Tumor
-0.1
1014
Normal
-0.1
481
Tumor
-0.1
416
Normal
-0.1
472
Normal
-0.1
816
Normal
-0.1
466
Normal
-0.1
1042
Normal
-0.1
964
Normal
-0.1
396
Normal
-0.1
558
Normal
-0.1
528
Normal
-0.1
978
Normal
-0.1
148
Normal
-0.1
488
Normal
-0.1
426
Normal
-0.1
746
Normal
-0.1
1016
Normal
-0.1
918
Normal
-0.2
214
Normal
-0.2
386
Normal
-0.2
464
Normal
-0.2
195
Tumor
-0.2
327
Tumor
-0.2
218
Normal
-0.2
968
Normal
-0.2
628
Normal
-0.2
474
Normal
-0.2
728
Normal
-0.2
353
Tumor
-0.2
664
Normal
-0.2
222
Normal
-0.2
298
Normal
-0.2
648
Normal
-0.2
884
Normal
-0.2
642
Normal
-0.2
615
Tumor
-0.2
786
Normal
-0.2
328
Normal
-0.2
494
Normal
-0.2
534
Normal
-0.2
272
Normal
-0.2
696
Normal
-0.2
533
Tumor
-0.2
984
Normal
-0.2
568
Normal
-0.2
392
Normal
-0.2
867
Tumor
-0.2
938
Normal
-0.2
128
Normal
-0.2
1044
Normal
-0.2
162
Normal
-0.2
698
Normal
-0.2
756
Normal
-0.2
388
Normal
-0.2
113
Tumor
-0.2
1013
Tumor
-0.2
126
Normal
-0.2
564
Normal
-0.2
314
Normal
-0.2
824
Normal
-0.2
882
Normal
-0.2
364
Normal
-0.2
342
Normal
-0.2
915
Tumor
-0.2
874
Normal
-0.2
114
Normal
-0.3
738
Normal
-0.3
716
Normal
-0.3
572
Normal
-0.3
727
Tumor
-0.3
878
Normal
-0.3
868
Normal
-0.3
982
Normal
-0.3
714
Normal
-0.3
858
Normal
-0.3
922
Normal
-0.3
981
Tumor
-0.3
924
Normal
-0.3
865
Tumor
-0.3
618
Normal
-0.3
958
Normal
-0.3
864
Normal
-0.3
484
Normal
-0.3
742
Normal
-0.3
394
Normal
-0.3
852
Normal
-0.3
616
Normal
-0.3
1046
Normal
-0.3
723
Tumor
-0.3
435
Tumor
-0.3
412
Normal
-0.3
196
Normal
-0.3
818
Normal
-0.4
356
Normal
-0.4
448
Normal
-0.4
1022
Normal
-0.4
1026
Normal
-0.4
465
Tumor
-0.4
866
Normal
-0.5
1032
Normal
-0.5
862
Normal
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
