MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.3 nTPM
HPA Brain:46.3 nTPM
GTEx:12.3 nTPM
FANTOM5:28.2 Scaled Tags Per Million
Pig:55.8 nTPM
Mouse:37.3 nTPM
Allen mouse:3.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 46.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.2
2019 Male, age 18, unknown 54.8
1833 Male, age 53, unknown 44.4
1827 Male, age 72, unknown 42.3
1830 Male, age 51, unknown 41.9
2666 Male, age 74, left hemisphere 41.6
2219 Male, age 76, both hemispheres 40.9
2411 Female, age 72, unknown 40.7
1870 Female, age 42, unknown 39.8
2586 Male, age 75, left hemisphere 37.7
2828 Female, age 72, unknown 37.7
Dorsal raphe nucleus
nTPM: 37.2
1828 Male, age 53, unknown 40.7
2750 Male, age 76, both hemispheres 39.6
2047 Male, age 72, unknown 35.5
2298 Female, age 72, unknown 35.3
2016 Female, age 72, unknown 34.7
Inferior colliculus
nTPM: 45.4
2097 Female, age 72, unknown 49.6
1890 Male, age 53, unknown 44.5
1848 Female, age 42, unknown 44.3
2849 Male, age 72, unknown 43.1
Median raphe nucleus
nTPM: 40.0
2220 Male, age 76, midline 40.0
Periaquaductal grey, anterior
nTPM: 39.2
2502 Female, age 75, unknown 44.3
1947 Male, age 18, unknown 37.7
1795 Male, age 51, unknown 35.7
Periaquaductal grey, dorsal
nTPM: 37.6
1840 Male, age 53, unknown 41.2
1831 Male, age 72, unknown 38.7
2850 Male, age 76, both hemispheres 37.1
2464 Female, age 72, unknown 33.4
Periaquaductal grey, lateral
nTPM: 38.7
2140 Male, age 76, both hemispheres 42.0
2053 Male, age 18, unknown 38.0
2272 Male, age 74, both hemispheres 36.1
Pretectal area
nTPM: 46.3
1944 Female, age 72, unknown 58.0
1817 Female, age 42, unknown 52.6
2407 Male, age 75, both hemispheres 51.3
1816 Male, age 51, unknown 49.8
2007 Male, age 72, unknown 48.4
1815 Male, age 53, unknown 47.6
2316 Male, age 76, right hemisphere 44.1
2667 Female, age 75, unknown 42.9
2224 Female, age 72, unknown 39.7
2825 Male, age 18, unknown 38.8
2273 Male, age 74, both hemispheres 35.9
Red nucleus
nTPM: 43.4
1865 Male, age 51, unknown 47.9
2785 Male, age 18, unknown 47.5
2823 Male, age 76, right hemisphere 46.8
2503 Female, age 72, unknown 45.3
2725 Female, age 75, unknown 45.2
2588 Male, age 74, left hemisphere 43.7
2584 Male, age 75, left hemisphere 41.7
1821 Female, age 72, unknown 41.0
1904 Male, age 53, unknown 41.0
2769 Male, age 72, unknown 40.8
2227 Male, age 72, unknown 40.6
1954 Female, age 42, unknown 39.4
Substantia nigra
nTPM: 43.1
2241 Male, age 72, unknown 49.2
2583 Male, age 75, right hemisphere 48.0
1916 Female, age 42, unknown 45.7
1889 Female, age 72, unknown 45.4
2590 Female, age 75, unknown 41.8
2699 Male, age 18, unknown 40.9
1851 Male, age 51, unknown 40.7
1941 Male, age 53, unknown 40.1
2665 Male, age 74, both hemispheres 39.8
2409 Female, age 72, unknown 39.4
Superior colliculus
nTPM: 42.9
2087 Female, age 72, unknown 54.9
1895 Male, age 76, right hemisphere 47.3
2587 Male, age 74, left hemisphere 42.8
1913 Female, age 42, unknown 42.6
1995 Male, age 72, unknown 42.2
1796 Male, age 53, unknown 41.2
1839 Male, age 51, unknown 40.4
2668 Female, age 75, unknown 39.7
2664 Male, age 75, both hemispheres 39.0
2261 Male, age 18, unknown 38.9
Ventral tegmental area
nTPM: 39.5
2218 Male, age 76, both hemispheres 45.2
2223 Female, age 72, unknown 40.4
1942 Male, age 51, unknown 40.1
1915 Female, age 42, unknown 39.0
2410 Female, age 72, unknown 36.9
2021 Male, age 53, unknown 35.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.3
Samples: 139

Max nTPM: 20.7
Min nTPM: 7.0
Std nTPM: 2.5
Median nTPM: 12.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 20.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 20.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 18.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 18.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 17.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 16.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 16.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 16.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 16.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 16.2
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 16.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 28.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.2
FF:10158-103A5 76 years, female 28.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 55.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.0
Samples: 4

Max nTPM: 50.8
Min nTPM: 39.8
Sample A Female 50.8
Sample B Female 40.2
Sample C Male 49.1
Sample D Male 39.8
Midbrain
nTPM: 55.8
Samples: 4

Max nTPM: 65.2
Min nTPM: 47.9
Sample A Female 53.2
Sample B Female 47.9
Sample C Male 65.2
Sample D Male 56.8
Periaqueductal gray
nTPM: 48.7
Samples: 3

Max nTPM: 56.3
Min nTPM: 42.5
Sample B Female 47.4
Sample C Male 56.3
Sample D Male 42.5
Superior colliculi
nTPM: 51.8
Samples: 4

Max nTPM: 54.8
Min nTPM: 44.1
Sample A Female 54.5
Sample B Female 44.1
Sample C Male 54.8
Sample D Male 53.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 37.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.3
Samples: 4

Max nTPM: 39.4
Min nTPM: 36.0
Sample A Male 36.0
Sample B Male 36.6
Sample C Female 39.4
Sample D Female 37.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
323171 Antisense, RP_040617_02_A05, Mouse strain C57BL/6J (56 days, male) 3.9
357093 Antisense, RP_040617_02_A05, Mouse strain C57BL/6J (56 days, male) 2.9

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