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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COMMD4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
103.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
250.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
249.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
226.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
213.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
211.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
211.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
209.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
204.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
202.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
200.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
197.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
195.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
191.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
190.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
189.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
188.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
187.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
187.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
186.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
183.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
180.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
178.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
178.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
173.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
168.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
167.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
167.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
163.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
162.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
161.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
161.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
160.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
160.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
158.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
157.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
157.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
157.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
155.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
155.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
155.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
155.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
155.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
154.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
154.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
154.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
152.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
152.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
152.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
149.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
149.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
149.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
148.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
147.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
147.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
145.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
144.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
143.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
142.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
142.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
142.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
140.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
140.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
140.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
139.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
138.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
138.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
137.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
136.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
136.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
136.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
135.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
135.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
134.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
132.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
132.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
132.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
132.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
131.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
131.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
131.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
130.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
129.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
129.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
129.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
129.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
129.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
129.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
128.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
128.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
127.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
127.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
127.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
126.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
126.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
126.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
126.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
124.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
123.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
123.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
122.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
122.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
121.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
120.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
120.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
119.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
118.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
118.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
117.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
117.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
116.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
116.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
116.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
116.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
115.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
115.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
115.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
115.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
115.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
114.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
114.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
114.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
114.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
114.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
114.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
113.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
113.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
111.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
111.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
111.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
111.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
111.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
110.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
110.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
110.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
110.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
110.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
110.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
109.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
109.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
109.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
109.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
108.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
108.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
106.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
106.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
106.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
106.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
106.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
106.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
106.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
106.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
105.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
104.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
104.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
104.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
104.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
104.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
104.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
104.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
103.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
102.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
102.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
102.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
102.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
101.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
100.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
100.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
100.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
100.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
99.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
99.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
99.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
98.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
98.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
98.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
98.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
98.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
97.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
97.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
97.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
97.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
97.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
96.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
96.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
95.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
95.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
95.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
95.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
94.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
94.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
93.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
93.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
93.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
93.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
93.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
93.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
93.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
93.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
92.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
92.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
91.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
91.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
91.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
91.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
91.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
91.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
90.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
89.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
89.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
89.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
88.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
88.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
87.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
87.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
87.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
87.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
87.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
85.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
85.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
85.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
85.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
85.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
85.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
84.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
84.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
84.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
84.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
84.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
84.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
84.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
83.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
83.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
83.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
82.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
82.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
82.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
81.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
81.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
81.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
80.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
79.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
79.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
78.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
78.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
78.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
78.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
78.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
77.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
77.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
77.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
77.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
77.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
77.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
77.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
77.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
77.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
76.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
76.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
76.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
75.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
75.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
74.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
74.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
73.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
73.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
73.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
72.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
72.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
72.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
72.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
72.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
72.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
71.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
71.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
71.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
71.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
70.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
70.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
70.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
70.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
69.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
69.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
69.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
69.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
69.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
69.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
68.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
68.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
68.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
67.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
67.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
67.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
67.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
67.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
66.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
66.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
66.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
66.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
66.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
65.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
65.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
65.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
64.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
64.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
63.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
63.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
63.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
62.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
62.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
62.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
62.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
62.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
61.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
59.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
59.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
59.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
58.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
58.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
57.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
57.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
56.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
56.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
56.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
55.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
55.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
55.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
55.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
55.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
55.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
54.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
54.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
54.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
53.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
52.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
52.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
51.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
51.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
51.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
51.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
51.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
50.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
50.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
49.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
49.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
49.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
49.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
48.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
48.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
48.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
47.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
46.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
46.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
46.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
45.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
44.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
44.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
44.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
43.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
42.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
41.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
37.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COMMD4 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
67.1
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
192.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
183.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
154.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
145.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
142.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
137.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
135.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
135.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
134.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
134.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
131.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
129.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
127.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
124.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
122.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
121.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
121.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
119.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
119.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
118.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
117.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
115.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
112.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
111.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
110.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
109.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
108.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
108.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
105.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
104.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
102.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
100.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
95.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
94.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
93.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
93.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
92.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
92.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
92.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
91.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
91.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
90.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
88.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
87.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
87.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
86.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
84.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
84.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
84.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
84.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
83.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
82.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
82.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
81.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
81.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
81.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
81.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
81.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
81.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
80.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
79.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
78.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
78.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
77.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
76.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
75.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
74.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
74.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
74.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
74.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
73.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
73.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
72.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
72.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
72.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
71.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
71.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
71.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
71.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
71.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
71.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
71.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
71.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
70.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
70.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
70.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
70.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
70.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
69.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
69.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
69.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
68.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
67.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
67.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
67.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
66.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
66.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
66.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
65.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
65.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
65.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
65.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
64.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
63.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
63.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
62.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
62.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
62.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
62.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
62.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
62.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
61.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
61.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
60.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
60.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
60.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
60.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
60.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
60.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
60.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
59.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
59.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
59.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
59.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
59.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
58.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
58.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
58.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
56.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
56.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
56.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
56.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
55.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
55.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
54.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
54.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
54.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
54.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
54.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
54.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
53.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
53.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
53.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
52.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
52.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
52.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
52.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
52.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
51.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
51.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
51.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
51.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
50.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
50.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
50.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
50.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
49.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
49.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
49.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
49.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
49.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
49.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
48.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
48.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
48.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
48.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
48.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
47.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
47.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
47.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
46.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
46.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
45.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
45.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
44.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
44.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
44.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
44.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
44.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
44.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
44.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
44.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
44.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
43.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
43.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
43.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
43.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
43.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
42.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
42.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
42.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
42.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
42.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
41.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
41.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
41.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
40.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
40.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
40.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
39.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
39.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
39.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
38.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
37.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
36.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
36.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
35.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
35.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
35.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
35.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
35.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
35.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
35.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
34.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
33.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
32.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
32.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
32.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
32.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
32.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
32.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
30.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
29.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
29.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
28.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
27.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
25.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
22.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
22.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
313
Tumor
0.7
1013
Tumor
0.5
1027
Tumor
0.5
663
Tumor
0.4
965
Tumor
0.4
921
Tumor
0.4
967
Tumor
0.4
567
Tumor
0.4
746
Normal
0.4
915
Tumor
0.4
537
Tumor
0.4
981
Tumor
0.4
738
Normal
0.3
755
Tumor
0.3
161
Tumor
0.3
723
Tumor
0.3
425
Tumor
0.3
1021
Tumor
0.3
128
Normal
0.3
813
Tumor
0.3
553
Tumor
0.3
745
Tumor
0.3
648
Normal
0.3
913
Tumor
0.3
111
Normal
0.3
125
Tumor
0.3
864
Normal
0.2
815
Tumor
0.2
466
Normal
0.2
925
Tumor
0.2
727
Tumor
0.2
617
Tumor
0.2
554
Normal
0.2
874
Normal
0.2
126
Normal
0.2
1026
Normal
0.2
261
Tumor
0.2
278
Normal
0.2
162
Normal
0.2
354
Normal
0.2
283
Tumor
0.2
411
Tumor
0.2
224
Normal
0.2
716
Normal
0.2
432
Normal
0.2
451
Tumor
0.2
114
Normal
0.2
136
Normal
0.2
724
Normal
0.2
132
Normal
0.2
314
Normal
0.2
862
Normal
0.2
137
Tumor
0.2
756
Normal
0.2
124
Normal
0.2
616
Normal
0.2
1022
Normal
0.2
527
Tumor
0.2
744
Normal
0.2
127
Tumor
0.2
824
Normal
0.2
344
Normal
0.2
922
Normal
0.2
966
Normal
0.2
778
Normal
0.2
627
Tumor
0.2
571
Tumor
0.2
1042
Normal
0.2
911
Tumor
0.2
186
Normal
0.2
572
Normal
0.2
558
Normal
0.2
868
Normal
0.2
686
Normal
0.2
228
Normal
0.2
926
Normal
0.2
1032
Normal
0.2
951
Tumor
0.2
952
Normal
0.2
351
Tumor
0.2
958
Normal
0.2
814
Normal
0.1
113
Tumor
0.1
528
Normal
0.1
426
Normal
0.1
742
Normal
0.1
533
Tumor
0.1
737
Tumor
0.1
487
Tumor
0.1
468
Normal
0.1
852
Normal
0.1
714
Normal
0.1
866
Normal
0.1
664
Normal
0.1
362
Normal
0.1
332
Normal
0.1
227
Tumor
0.1
957
Tumor
0.1
431
Tumor
0.1
1041
Tumor
0.1
123
Tumor
0.1
185
Tumor
0.1
786
Normal
0.1
968
Normal
0.1
422
Normal
0.1
484
Normal
0.1
421
Tumor
0.1
148
Normal
0.1
513
Tumor
0.1
918
Normal
0.1
491
Tumor
0.1
728
Normal
0.1
212
Normal
0.1
342
Normal
0.1
284
Normal
0.1
914
Normal
0.1
818
Normal
0.1
816
Normal
0.1
697
Tumor
0.1
696
Normal
0.1
534
Normal
0.1
172
Normal
0.1
777
Tumor
0.1
647
Tumor
0.1
661
Tumor
0.1
394
Normal
0.1
568
Normal
0.1
525
Tumor
0.1
138
Normal
0.1
1014
Normal
0.1
147
Tumor
0.1
352
Normal
0.1
474
Normal
0.1
488
Normal
0.1
356
Normal
0.1
741
Tumor
0.1
662
Normal
0.1
427
Tumor
0.1
964
Normal
0.1
446
Normal
0.1
436
Normal
0.1
636
Normal
0.1
396
Normal
0.1
564
Normal
0.1
456
Normal
0.1
628
Normal
0.1
434
Normal
0.1
467
Tumor
0.1
257
Tumor
0.1
142
Normal
0.1
851
Tumor
0.1
666
Normal
0.1
358
Normal
0.1
924
Normal
0.1
413
Tumor
0.1
858
Normal
0.1
471
Tumor
0.1
312
Normal
0.1
722
Normal
0.1
386
Normal
0.1
388
Normal
0.1
685
Tumor
0.1
392
Normal
0.1
976
Normal
0.1
311
Tumor
0.1
1028
Normal
0.1
615
Tumor
0.1
214
Normal
0.1
937
Tumor
0.1
1031
Tumor
0.1
473
Tumor
0.0
494
Normal
0.0
518
Normal
0.0
455
Tumor
0.0
977
Tumor
0.0
635
Tumor
0.0
536
Normal
0.0
188
Normal
0.0
873
Tumor
0.0
963
Tumor
0.0
618
Normal
0.0
882
Normal
0.0
857
Tumor
0.0
984
Normal
0.0
1046
Normal
0.0
464
Normal
0.0
695
Tumor
0.0
171
Tumor
0.0
982
Normal
0.0
412
Normal
0.0
443
Tumor
0.0
817
Tumor
0.0
285
Tumor
0.0
538
Normal
0.0
368
Normal
0.0
497
Tumor
0.0
1016
Normal
0.0
414
Normal
0.0
865
Tumor
0.0
698
Normal
0.0
365
Tumor
0.0
366
Normal
0.0
923
Tumor
0.0
416
Normal
0.0
112
Tumor
0.0
492
Normal
0.0
391
Tumor
0.0
665
Tumor
0.0
383
Tumor
0.0
785
Tumor
0.0
1015
Tumor
0.0
884
Normal
0.0
1043
Tumor
0.0
462
Normal
0.0
1045
Tumor
0.0
498
Normal
0.0
477
Tumor
0.0
364
Normal
0.0
557
Tumor
0.0
516
Normal
0.0
376
Normal
0.0
363
Tumor
0.0
298
Normal
0.0
218
Normal
0.0
232
Normal
0.0
286
Normal
0.0
672
Normal
0.0
343
Tumor
0.0
428
Normal
0.0
463
Tumor
0.0
975
Tumor
0.0
912
Normal
0.0
131
Tumor
0.0
146
Normal
0.0
938
Normal
0.0
341
Tumor
0.0
435
Tumor
0.0
297
Tumor
-0.1
482
Normal
-0.1
444
Normal
-0.1
328
Normal
-0.1
353
Tumor
-0.1
917
Tumor
-0.1
867
Tumor
-0.1
861
Tumor
-0.1
878
Normal
-0.1
361
Tumor
-0.1
452
Normal
-0.1
546
Normal
-0.1
956
Normal
-0.1
713
Tumor
-0.1
387
Tumor
-0.1
916
Normal
-0.1
145
Tumor
-0.1
231
Tumor
-0.1
721
Tumor
-0.1
883
Tumor
-0.1
327
Tumor
-0.1
574
Normal
-0.1
472
Normal
-0.1
187
Tumor
-0.1
526
Normal
-0.1
978
Normal
-0.1
465
Tumor
-0.1
943
Tumor
-0.1
424
Normal
-0.1
545
Tumor
-0.1
944
Normal
-0.1
514
Normal
-0.1
1025
Tumor
-0.1
481
Tumor
-0.1
863
Tumor
-0.1
955
Tumor
-0.1
448
Normal
-0.1
258
Normal
-0.1
211
Tumor
-0.1
196
Normal
-0.1
415
Tumor
-0.1
262
Normal
-0.1
384
Normal
-0.1
642
Normal
-0.1
135
Tumor
-0.1
743
Tumor
-0.2
823
Tumor
-0.2
1044
Normal
-0.2
715
Tumor
-0.2
524
Normal
-0.2
267
Tumor
-0.2
445
Tumor
-0.2
461
Tumor
-0.2
515
Tumor
-0.2
375
Tumor
-0.2
395
Tumor
-0.2
355
Tumor
-0.2
433
Tumor
-0.2
671
Tumor
-0.2
277
Tumor
-0.2
272
Normal
-0.2
222
Normal
-0.2
223
Tumor
-0.2
954
Normal
-0.2
478
Normal
-0.2
393
Tumor
-0.2
447
Tumor
-0.2
271
Tumor
-0.2
523
Tumor
-0.2
881
Tumor
-0.2
367
Tumor
-0.2
953
Tumor
-0.2
192
Normal
-0.2
983
Tumor
-0.3
357
Tumor
-0.3
641
Tumor
-0.3
195
Tumor
-0.3
268
Normal
-0.3
141
Tumor
-0.3
517
Tumor
-0.3
423
Tumor
-0.3
331
Tumor
-0.4
573
Tumor
-0.4
563
Tumor
-0.4
877
Tumor
-0.4
535
Tumor
-0.4
217
Tumor
-0.4
385
Tumor
-0.4
221
Tumor
-0.4
191
Tumor
-0.4
493
Tumor
-0.5
213
Tumor
-0.5
483
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.