MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.6 nTPM
HPA Brain:13.3 nTPM
GTEx:34.6 nTPM
FANTOM5:5.6 Scaled Tags Per Million
Pig:30.9 nTPM
Mouse:43.3 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 13.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.7
2586 Male, age 75, left hemisphere 20.6
2411 Female, age 72, unknown 16.5
2019 Male, age 18, unknown 16.1
2828 Female, age 72, unknown 14.0
1827 Male, age 72, unknown 13.1
1870 Female, age 42, unknown 13.0
2666 Male, age 74, left hemisphere 10.6
1830 Male, age 51, unknown 10.3
1833 Male, age 53, unknown 8.5
2219 Male, age 76, both hemispheres 4.9
Dorsal raphe nucleus
nTPM: 11.9
2298 Female, age 72, unknown 20.0
1828 Male, age 53, unknown 11.5
2750 Male, age 76, both hemispheres 10.6
2047 Male, age 72, unknown 9.0
2016 Female, age 72, unknown 8.1
Inferior colliculus
nTPM: 11.0
2097 Female, age 72, unknown 14.7
1890 Male, age 53, unknown 11.6
1848 Female, age 42, unknown 10.1
2849 Male, age 72, unknown 7.7
Median raphe nucleus
nTPM: 8.0
2220 Male, age 76, midline 8.0
Periaquaductal grey, anterior
nTPM: 12.6
1795 Male, age 51, unknown 14.5
2502 Female, age 75, unknown 12.8
1947 Male, age 18, unknown 10.6
Periaquaductal grey, dorsal
nTPM: 9.2
2464 Female, age 72, unknown 10.8
1831 Male, age 72, unknown 10.7
1840 Male, age 53, unknown 8.2
2850 Male, age 76, both hemispheres 7.3
Periaquaductal grey, lateral
nTPM: 10.0
2272 Male, age 74, both hemispheres 12.2
2053 Male, age 18, unknown 8.8
2140 Male, age 76, both hemispheres 8.8
Pretectal area
nTPM: 12.6
2007 Male, age 72, unknown 17.5
1817 Female, age 42, unknown 16.6
1816 Male, age 51, unknown 16.4
1944 Female, age 72, unknown 14.6
1815 Male, age 53, unknown 13.3
2273 Male, age 74, both hemispheres 12.6
2224 Female, age 72, unknown 11.9
2825 Male, age 18, unknown 9.7
2316 Male, age 76, right hemisphere 9.4
2667 Female, age 75, unknown 8.4
2407 Male, age 75, both hemispheres 7.7
Red nucleus
nTPM: 12.6
1821 Female, age 72, unknown 17.4
2785 Male, age 18, unknown 15.9
1904 Male, age 53, unknown 15.4
2769 Male, age 72, unknown 14.2
2227 Male, age 72, unknown 13.4
1954 Female, age 42, unknown 13.3
2503 Female, age 72, unknown 12.3
2725 Female, age 75, unknown 12.1
1865 Male, age 51, unknown 11.4
2823 Male, age 76, right hemisphere 9.9
2588 Male, age 74, left hemisphere 9.3
2584 Male, age 75, left hemisphere 6.9
Substantia nigra
nTPM: 13.2
1916 Female, age 42, unknown 19.6
2409 Female, age 72, unknown 15.6
1851 Male, age 51, unknown 15.4
1889 Female, age 72, unknown 15.0
2590 Female, age 75, unknown 14.1
2583 Male, age 75, right hemisphere 13.4
1941 Male, age 53, unknown 11.9
2241 Male, age 72, unknown 10.8
2699 Male, age 18, unknown 9.5
2665 Male, age 74, both hemispheres 6.8
Superior colliculus
nTPM: 12.5
1796 Male, age 53, unknown 16.3
2668 Female, age 75, unknown 15.7
2261 Male, age 18, unknown 15.4
1913 Female, age 42, unknown 14.2
2087 Female, age 72, unknown 13.2
2587 Male, age 74, left hemisphere 12.5
1895 Male, age 76, right hemisphere 10.7
1995 Male, age 72, unknown 10.7
1839 Male, age 51, unknown 8.9
2664 Male, age 75, both hemispheres 7.2
Ventral tegmental area
nTPM: 13.3
2410 Female, age 72, unknown 20.0
1915 Female, age 42, unknown 16.5
1942 Male, age 51, unknown 11.7
2223 Female, age 72, unknown 10.8
2218 Male, age 76, both hemispheres 10.6
2021 Male, age 53, unknown 10.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 34.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.6
Samples: 139

Max nTPM: 96.8
Min nTPM: 4.7
Std nTPM: 11.6
Median nTPM: 32.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 96.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 68.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 63.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 62.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 59.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 57.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 57.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 56.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 54.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 53.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 52.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 5.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.6
FF:10158-103A5 76 years, female 5.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 30.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.6
Samples: 4

Max nTPM: 37.9
Min nTPM: 26.2
Sample A Female 37.9
Sample B Female 26.2
Sample C Male 29.3
Sample D Male 29.0
Midbrain
nTPM: 31.0
Samples: 4

Max nTPM: 35.7
Min nTPM: 26.3
Sample A Female 35.7
Sample B Female 30.6
Sample C Male 31.3
Sample D Male 26.3
Periaqueductal gray
nTPM: 24.1
Samples: 3

Max nTPM: 27.9
Min nTPM: 22.2
Sample B Female 22.2
Sample C Male 27.9
Sample D Male 22.3
Superior colliculi
nTPM: 30.8
Samples: 4

Max nTPM: 37.8
Min nTPM: 24.7
Sample A Female 37.8
Sample B Female 24.7
Sample C Male 34.7
Sample D Male 25.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 43.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.2
Samples: 4

Max nTPM: 48.9
Min nTPM: 37.1
Sample A Male 48.9
Sample B Male 39.0
Sample C Female 37.1
Sample D Female 47.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68924437 Antisense, RP_050303_02_D02, Mouse strain C57BL/6J (56 days, male) 0.7

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