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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VPS37B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
59.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
42.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
26.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
24.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
23.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VPS37B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.2
Number of samples
231
Samples
Sample
Description
TPM
DO45301
0 years, male, NA, stage:2, dead, 1440 days
80.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
73.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
40.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
34.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
32.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
32.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
28.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
26.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
25.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
21.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
3.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
2.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
2.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
917
Tumor
1.7
131
Tumor
1.3
311
Tumor
1.0
545
Tumor
0.9
211
Tumor
0.9
283
Tumor
0.8
125
Tumor
0.8
297
Tumor
0.8
385
Tumor
0.8
126
Normal
0.8
343
Tumor
0.6
916
Normal
0.6
424
Normal
0.6
354
Normal
0.6
957
Tumor
0.6
444
Normal
0.6
743
Tumor
0.6
447
Tumor
0.5
147
Tumor
0.5
331
Tumor
0.5
943
Tumor
0.5
671
Tumor
0.5
395
Tumor
0.5
672
Normal
0.5
455
Tumor
0.5
192
Normal
0.5
352
Normal
0.5
491
Tumor
0.5
492
Normal
0.5
375
Tumor
0.5
724
Normal
0.4
358
Normal
0.4
467
Tumor
0.4
138
Normal
0.4
428
Normal
0.4
434
Normal
0.4
114
Normal
0.4
627
Tumor
0.4
536
Normal
0.4
393
Tumor
0.4
363
Tumor
0.4
146
Normal
0.4
384
Normal
0.4
978
Normal
0.4
213
Tumor
0.4
877
Tumor
0.4
188
Normal
0.4
262
Normal
0.4
383
Tumor
0.3
881
Tumor
0.3
524
Normal
0.3
414
Normal
0.3
421
Tumor
0.3
538
Normal
0.3
268
Normal
0.3
921
Tumor
0.3
463
Tumor
0.3
285
Tumor
0.3
111
Normal
0.3
661
Tumor
0.3
628
Normal
0.3
498
Normal
0.3
926
Normal
0.3
427
Tumor
0.3
351
Tumor
0.3
563
Tumor
0.3
636
Normal
0.3
362
Normal
0.3
918
Normal
0.3
1042
Normal
0.3
355
Tumor
0.3
1025
Tumor
0.3
535
Tumor
0.2
132
Normal
0.2
136
Normal
0.2
616
Normal
0.2
364
Normal
0.2
124
Normal
0.2
422
Normal
0.2
145
Tumor
0.2
641
Tumor
0.2
925
Tumor
0.2
744
Normal
0.2
514
Normal
0.2
666
Normal
0.2
413
Tumor
0.2
386
Normal
0.2
328
Normal
0.2
224
Normal
0.2
975
Tumor
0.2
298
Normal
0.2
966
Normal
0.2
958
Normal
0.2
956
Normal
0.2
922
Normal
0.2
738
Normal
0.2
344
Normal
0.2
185
Tumor
0.2
416
Normal
0.2
662
Normal
0.2
412
Normal
0.2
923
Tumor
0.2
664
Normal
0.2
366
Normal
0.2
272
Normal
0.2
526
Normal
0.2
573
Tumor
0.2
425
Tumor
0.2
721
Tumor
0.2
617
Tumor
0.2
415
Tumor
0.1
332
Normal
0.1
984
Normal
0.1
618
Normal
0.1
924
Normal
0.1
823
Tumor
0.1
965
Tumor
0.1
365
Tumor
0.1
914
Normal
0.1
517
Tumor
0.1
478
Normal
0.1
284
Normal
0.1
353
Tumor
0.1
723
Tumor
0.1
232
Normal
0.1
426
Normal
0.1
356
Normal
0.1
817
Tumor
0.1
814
Normal
0.1
392
Normal
0.1
212
Normal
0.1
1031
Tumor
0.1
342
Normal
0.1
376
Normal
0.1
278
Normal
0.1
231
Tumor
0.1
1032
Normal
0.1
127
Tumor
0.1
1014
Normal
0.1
954
Normal
0.1
516
Normal
0.1
494
Normal
0.1
558
Normal
0.1
314
Normal
0.1
113
Tumor
0.1
394
Normal
0.1
141
Tumor
0.1
191
Tumor
0.1
852
Normal
0.1
217
Tumor
0.1
976
Normal
0.1
466
Normal
0.1
953
Tumor
0.1
528
Normal
0.1
468
Normal
0.1
742
Normal
0.1
312
Normal
0.1
1028
Normal
0.0
396
Normal
0.0
716
Normal
0.0
461
Tumor
0.0
277
Tumor
0.0
162
Normal
0.0
722
Normal
0.0
963
Tumor
0.0
271
Tumor
0.0
433
Tumor
0.0
128
Normal
0.0
368
Normal
0.0
187
Tumor
0.0
195
Tumor
0.0
1021
Tumor
0.0
615
Tumor
0.0
642
Normal
0.0
574
Normal
0.0
938
Normal
0.0
713
Tumor
0.0
488
Normal
0.0
525
Tumor
0.0
697
Tumor
0.0
728
Normal
0.0
1044
Normal
0.0
1026
Normal
0.0
533
Tumor
0.0
423
Tumor
0.0
451
Tumor
0.0
123
Tumor
0.0
968
Normal
0.0
685
Tumor
0.0
518
Normal
0.0
983
Tumor
0.0
456
Normal
0.0
568
Normal
0.0
741
Tumor
0.0
341
Tumor
0.0
967
Tumor
0.0
786
Normal
0.0
647
Tumor
0.0
944
Normal
0.0
534
Normal
0.0
221
Tumor
0.0
955
Tumor
0.0
472
Normal
0.0
432
Normal
0.0
546
Normal
0.0
186
Normal
0.0
391
Tumor
0.0
493
Tumor
0.0
482
Normal
0.0
148
Normal
0.0
497
Tumor
0.0
464
Normal
0.0
462
Normal
-0.1
1013
Tumor
-0.1
388
Normal
-0.1
435
Tumor
-0.1
515
Tumor
-0.1
1015
Tumor
-0.1
554
Normal
-0.1
223
Tumor
-0.1
1027
Tumor
-0.1
214
Normal
-0.1
1022
Normal
-0.1
218
Normal
-0.1
142
Normal
-0.1
172
Normal
-0.1
737
Tumor
-0.1
884
Normal
-0.1
977
Tumor
-0.1
863
Tumor
-0.1
572
Normal
-0.1
686
Normal
-0.1
715
Tumor
-0.1
228
Normal
-0.1
714
Normal
-0.1
857
Tumor
-0.1
313
Tumor
-0.1
484
Normal
-0.1
915
Tumor
-0.1
564
Normal
-0.1
327
Tumor
-0.1
816
Normal
-0.1
874
Normal
-0.1
446
Normal
-0.1
161
Tumor
-0.1
868
Normal
-0.1
286
Normal
-0.1
513
Tumor
-0.1
137
Tumor
-0.1
196
Normal
-0.1
964
Normal
-0.1
258
Normal
-0.1
367
Tumor
-0.1
952
Normal
-0.1
448
Normal
-0.2
648
Normal
-0.2
557
Tumor
-0.2
878
Normal
-0.2
481
Tumor
-0.2
1045
Tumor
-0.2
858
Normal
-0.2
1016
Normal
-0.2
865
Tumor
-0.2
261
Tumor
-0.2
813
Tumor
-0.2
487
Tumor
-0.2
1046
Normal
-0.2
756
Normal
-0.2
357
Tumor
-0.2
665
Tumor
-0.2
663
Tumor
-0.2
696
Normal
-0.2
222
Normal
-0.2
727
Tumor
-0.2
171
Tumor
-0.2
483
Tumor
-0.2
866
Normal
-0.2
862
Normal
-0.2
553
Tumor
-0.2
864
Normal
-0.3
1041
Tumor
-0.3
1043
Tumor
-0.3
882
Normal
-0.3
474
Normal
-0.3
913
Tumor
-0.3
471
Tumor
-0.3
257
Tumor
-0.3
818
Normal
-0.3
537
Tumor
-0.3
951
Tumor
-0.3
227
Tumor
-0.3
523
Tumor
-0.3
785
Tumor
-0.3
135
Tumor
-0.3
452
Normal
-0.3
436
Normal
-0.3
867
Tumor
-0.3
698
Normal
-0.3
571
Tumor
-0.3
815
Tumor
-0.4
778
Normal
-0.4
361
Tumor
-0.4
824
Normal
-0.4
883
Tumor
-0.4
851
Tumor
-0.4
912
Normal
-0.4
746
Normal
-0.4
982
Normal
-0.4
861
Tumor
-0.4
981
Tumor
-0.4
411
Tumor
-0.5
777
Tumor
-0.5
443
Tumor
-0.5
527
Tumor
-0.5
387
Tumor
-0.5
635
Tumor
-0.5
911
Tumor
-0.6
112
Tumor
-0.6
567
Tumor
-0.6
695
Tumor
-0.6
755
Tumor
-0.6
473
Tumor
-0.7
937
Tumor
-0.7
873
Tumor
-0.7
465
Tumor
-0.7
745
Tumor
-0.7
477
Tumor
-0.7
431
Tumor
-0.8
267
Tumor
-1.0
445
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
