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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SDSL is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
51.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
281.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
264.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
241.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
228.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
214.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
213.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
197.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
189.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
168.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
168.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
167.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
166.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
161.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
160.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
158.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
156.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
151.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
144.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
142.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
139.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
136.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
135.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
131.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
128.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
127.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
125.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
123.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
121.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
119.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
119.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
115.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
111.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
110.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
109.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
109.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
109.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
108.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
106.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
105.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
102.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
102.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
101.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
100.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
99.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
99.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
98.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
98.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
97.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
96.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
95.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
95.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
94.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
94.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
93.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
92.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
91.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
91.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
90.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
89.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
88.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
87.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
86.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
86.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
85.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
85.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
83.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
82.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
82.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
80.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
80.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
79.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
79.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
79.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
78.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
76.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
75.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
75.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
75.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
75.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
75.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
75.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
72.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
72.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
72.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
72.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
71.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
70.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
68.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
68.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
68.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
67.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
67.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
67.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
66.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
66.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
65.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
64.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
64.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
64.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
64.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
63.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
63.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
63.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
62.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
62.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
61.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
61.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
61.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
60.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
60.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
59.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
58.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
58.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
57.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
57.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
57.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
57.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
57.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
57.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
56.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
56.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
56.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
56.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
55.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
55.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
54.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
53.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
53.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
53.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
53.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
52.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
52.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
52.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
51.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
51.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
51.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
51.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
51.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
51.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
50.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
50.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
49.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
49.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
49.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
48.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
48.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
47.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
47.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
46.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
46.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
46.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
46.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
45.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
45.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
45.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
44.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
44.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
44.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
44.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
43.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
43.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
42.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
42.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
42.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
41.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
41.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
41.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
40.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
40.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
40.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
40.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
40.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
40.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
39.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
39.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
39.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
39.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
39.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
39.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
38.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
38.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
38.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
37.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
37.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
37.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
36.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
36.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
36.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
36.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
35.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
35.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
35.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
35.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
35.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
34.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
34.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
34.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
34.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
33.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
33.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
33.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
33.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
33.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
32.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
32.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
32.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
32.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
32.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
32.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
32.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
31.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
31.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
31.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
31.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
31.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
31.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
31.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
31.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
31.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
31.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
31.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
30.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
30.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
30.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
30.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
30.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
30.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
30.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
30.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
29.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
29.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
29.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
29.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
29.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
28.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
27.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
27.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
27.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
27.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
27.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
27.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
26.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
25.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
25.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
25.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
24.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
24.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
24.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
24.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
24.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
24.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
23.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
23.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
23.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
22.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
22.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
22.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
22.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
21.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
21.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
20.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SDSL is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.3
Number of samples
231
Samples
Sample
Description
TPM
DO50798
0 years, male, NA, stage:3, dead, 30 days
183.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
119.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
113.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
99.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
95.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
87.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
84.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
81.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
78.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
76.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
76.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
67.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
65.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
62.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
61.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
55.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
55.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
54.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
52.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
52.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
52.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
50.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
49.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
48.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
46.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
45.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
45.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
45.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
43.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
42.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
42.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
41.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
41.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
41.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
41.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
41.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
39.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
39.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
38.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
38.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
38.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
38.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
37.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
37.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
37.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
37.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
36.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
36.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
35.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
35.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
35.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
34.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
33.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
33.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
33.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
32.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
32.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
32.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
32.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
31.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
31.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
31.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
31.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
30.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
30.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
30.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
30.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
30.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
29.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
29.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
29.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
28.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
28.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
28.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
27.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
27.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
27.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
27.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
26.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
26.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
26.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
26.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
26.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
26.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
25.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
25.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
24.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
24.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
24.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
24.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
23.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
23.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
23.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
22.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
22.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
21.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
20.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
20.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
20.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
20.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
18.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
18.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
12.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
745
Tumor
1.8
222
Normal
1.2
914
Normal
1.1
518
Normal
1.0
728
Normal
0.9
327
Tumor
0.9
755
Tumor
0.8
386
Normal
0.8
1043
Tumor
0.8
615
Tumor
0.8
366
Normal
0.8
564
Normal
0.8
426
Normal
0.8
353
Tumor
0.7
456
Normal
0.7
723
Tumor
0.7
756
Normal
0.7
132
Normal
0.7
862
Normal
0.7
1042
Normal
0.7
214
Normal
0.7
111
Normal
0.7
258
Normal
0.7
114
Normal
0.7
365
Tumor
0.6
516
Normal
0.6
128
Normal
0.6
188
Normal
0.6
344
Normal
0.6
858
Normal
0.6
778
Normal
0.6
423
Tumor
0.6
866
Normal
0.6
642
Normal
0.6
955
Tumor
0.6
666
Normal
0.6
474
Normal
0.6
341
Tumor
0.6
816
Normal
0.6
468
Normal
0.6
172
Normal
0.6
446
Normal
0.6
388
Normal
0.6
513
Tumor
0.6
278
Normal
0.6
722
Normal
0.6
228
Normal
0.6
742
Normal
0.6
918
Normal
0.6
571
Tumor
0.6
533
Tumor
0.5
563
Tumor
0.5
1022
Normal
0.5
396
Normal
0.5
857
Tumor
0.5
528
Normal
0.5
568
Normal
0.5
432
Normal
0.5
874
Normal
0.5
616
Normal
0.5
714
Normal
0.5
272
Normal
0.5
648
Normal
0.5
944
Normal
0.5
878
Normal
0.5
342
Normal
0.5
136
Normal
0.5
414
Normal
0.5
462
Normal
0.5
126
Normal
0.5
356
Normal
0.5
1044
Normal
0.5
452
Normal
0.5
223
Tumor
0.5
1026
Normal
0.5
982
Normal
0.5
362
Normal
0.5
686
Normal
0.5
448
Normal
0.5
416
Normal
0.5
937
Tumor
0.5
364
Normal
0.5
515
Tumor
0.5
436
Normal
0.5
466
Normal
0.5
484
Normal
0.5
966
Normal
0.5
926
Normal
0.4
617
Tumor
0.4
394
Normal
0.4
464
Normal
0.4
635
Tumor
0.4
328
Normal
0.4
618
Normal
0.4
196
Normal
0.4
636
Normal
0.4
954
Normal
0.4
738
Normal
0.4
314
Normal
0.4
312
Normal
0.4
434
Normal
0.4
627
Tumor
0.4
358
Normal
0.4
1028
Normal
0.4
925
Tumor
0.4
286
Normal
0.4
148
Normal
0.4
746
Normal
0.4
262
Normal
0.4
698
Normal
0.4
864
Normal
0.4
268
Normal
0.4
956
Normal
0.4
376
Normal
0.3
298
Normal
0.3
922
Normal
0.3
186
Normal
0.3
218
Normal
0.3
472
Normal
0.3
1046
Normal
0.3
664
Normal
0.3
493
Tumor
0.3
924
Normal
0.3
494
Normal
0.3
212
Normal
0.3
368
Normal
0.3
852
Normal
0.3
162
Normal
0.3
424
Normal
0.3
572
Normal
0.3
232
Normal
0.3
412
Normal
0.3
574
Normal
0.2
662
Normal
0.2
428
Normal
0.2
952
Normal
0.2
221
Tumor
0.2
526
Normal
0.2
913
Tumor
0.2
882
Normal
0.2
976
Normal
0.2
818
Normal
0.2
361
Tumor
0.2
868
Normal
0.2
141
Tumor
0.2
558
Normal
0.2
628
Normal
0.2
146
Normal
0.2
964
Normal
0.2
672
Normal
0.2
912
Normal
0.2
284
Normal
0.2
546
Normal
0.2
195
Tumor
0.2
1014
Normal
0.2
786
Normal
0.2
482
Normal
0.1
968
Normal
0.1
716
Normal
0.1
538
Normal
0.1
1045
Tumor
0.1
354
Normal
0.1
978
Normal
0.1
444
Normal
0.1
1032
Normal
0.1
185
Tumor
0.1
145
Tumor
0.1
138
Normal
0.1
1016
Normal
0.1
984
Normal
0.1
332
Normal
0.1
127
Tumor
0.1
938
Normal
0.1
142
Normal
0.1
916
Normal
0.1
213
Tumor
0.1
824
Normal
0.0
727
Tumor
0.0
187
Tumor
0.0
422
Normal
0.0
224
Normal
0.0
492
Normal
0.0
554
Normal
0.0
958
Normal
0.0
363
Tumor
-0.1
647
Tumor
-0.1
352
Normal
-0.1
192
Normal
-0.1
471
Tumor
-0.1
433
Tumor
-0.2
477
Tumor
-0.2
514
Normal
-0.2
461
Tumor
-0.2
744
Normal
-0.2
696
Normal
-0.2
721
Tumor
-0.2
481
Tumor
-0.2
465
Tumor
-0.2
392
Normal
-0.2
257
Tumor
-0.2
573
Tumor
-0.3
137
Tumor
-0.3
785
Tumor
-0.3
467
Tumor
-0.3
713
Tumor
-0.3
498
Normal
-0.3
536
Normal
-0.3
478
Normal
-0.3
113
Tumor
-0.3
267
Tumor
-0.3
191
Tumor
-0.3
697
Tumor
-0.4
112
Tumor
-0.4
147
Tumor
-0.4
483
Tumor
-0.4
953
Tumor
-0.4
917
Tumor
-0.4
823
Tumor
-0.5
443
Tumor
-0.5
1025
Tumor
-0.5
957
Tumor
-0.5
217
Tumor
-0.5
447
Tumor
-0.5
534
Normal
-0.5
884
Normal
-0.5
873
Tumor
-0.5
777
Tumor
-0.5
415
Tumor
-0.5
981
Tumor
-0.6
455
Tumor
-0.6
524
Normal
-0.6
297
Tumor
-0.6
737
Tumor
-0.6
695
Tumor
-0.6
421
Tumor
-0.6
911
Tumor
-0.6
488
Normal
-0.6
384
Normal
-0.7
491
Tumor
-0.7
395
Tumor
-0.7
161
Tumor
-0.7
385
Tumor
-0.7
343
Tumor
-0.7
1031
Tumor
-0.7
427
Tumor
-0.8
355
Tumor
-0.8
525
Tumor
-0.8
975
Tumor
-0.8
123
Tumor
-0.8
435
Tumor
-0.8
311
Tumor
-0.8
135
Tumor
-0.8
943
Tumor
-0.8
814
Normal
-0.8
881
Tumor
-0.8
411
Tumor
-0.8
741
Tumor
-0.8
227
Tumor
-0.8
641
Tumor
-0.9
283
Tumor
-0.9
387
Tumor
-0.9
1015
Tumor
-0.9
261
Tumor
-0.9
497
Tumor
-0.9
124
Normal
-0.9
724
Normal
-0.9
413
Tumor
-0.9
383
Tumor
-1.0
553
Tumor
-1.0
463
Tumor
-1.0
357
Tumor
-1.0
557
Tumor
-1.0
963
Tumor
-1.1
125
Tumor
-1.1
271
Tumor
-1.1
313
Tumor
-1.1
487
Tumor
-1.1
527
Tumor
-1.1
1041
Tumor
-1.1
863
Tumor
-1.1
877
Tumor
-1.1
445
Tumor
-1.1
393
Tumor
-1.1
923
Tumor
-1.1
545
Tumor
-1.1
375
Tumor
-1.1
277
Tumor
-1.1
977
Tumor
-1.1
1021
Tumor
-1.1
535
Tumor
-1.2
425
Tumor
-1.2
451
Tumor
-1.2
861
Tumor
-1.2
665
Tumor
-1.2
523
Tumor
-1.2
865
Tumor
-1.2
671
Tumor
-1.3
391
Tumor
-1.3
567
Tumor
-1.3
431
Tumor
-1.3
517
Tumor
-1.3
331
Tumor
-1.3
211
Tumor
-1.3
1027
Tumor
-1.3
171
Tumor
-1.3
965
Tumor
-1.4
663
Tumor
-1.4
367
Tumor
-1.4
851
Tumor
-1.4
967
Tumor
-1.4
883
Tumor
-1.4
817
Tumor
-1.4
867
Tumor
-1.4
231
Tumor
-1.5
351
Tumor
-1.5
131
Tumor
-1.5
813
Tumor
-1.5
983
Tumor
-1.6
743
Tumor
-1.6
285
Tumor
-1.7
661
Tumor
-1.8
473
Tumor
-1.8
1013
Tumor
-1.8
815
Tumor
-1.9
951
Tumor
-1.9
537
Tumor
-1.9
715
Tumor
-2.0
921
Tumor
-2.0
685
Tumor
-2.2
915
Tumor
-2.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
