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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TAPBPL is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
66.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
56.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
56.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
55.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
48.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
44.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
43.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
43.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
43.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
41.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
41.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
41.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
41.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
40.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
40.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
39.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
38.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
34.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
32.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
32.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
32.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
31.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
31.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
31.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
30.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
30.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
30.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
30.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
29.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
28.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
28.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
27.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
27.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
27.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
25.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
25.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
25.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
25.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
25.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
25.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
25.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
24.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
24.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
24.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
24.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
24.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
23.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
23.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
23.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
23.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
23.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
23.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
22.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
22.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
22.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
22.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
22.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
22.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
21.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
21.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
20.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
19.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
19.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
18.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
18.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
18.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
17.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
17.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
16.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
14.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
13.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
4.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TAPBPL is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.0
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
106.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
103.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
66.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
66.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
58.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
45.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
43.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
41.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
35.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
34.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
32.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
30.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
30.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
30.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
28.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
28.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
28.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
28.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
28.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
27.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
27.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
25.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
25.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
25.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
25.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
25.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
25.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
25.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
25.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
24.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
24.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
24.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
23.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
23.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
23.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
22.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
22.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
22.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
22.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
21.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
20.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
19.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
19.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
17.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
17.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
16.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
857
Tumor
1.8
261
Tumor
1.1
262
Normal
0.8
742
Normal
0.8
432
Normal
0.8
513
Tumor
0.8
313
Tumor
0.8
716
Normal
0.8
915
Tumor
0.7
162
Normal
0.7
878
Normal
0.7
436
Normal
0.7
714
Normal
0.7
468
Normal
0.7
663
Tumor
0.7
422
Normal
0.7
958
Normal
0.7
944
Normal
0.7
228
Normal
0.7
964
Normal
0.6
884
Normal
0.6
534
Normal
0.6
467
Tumor
0.6
943
Tumor
0.6
745
Tumor
0.6
722
Normal
0.6
724
Normal
0.6
362
Normal
0.6
1045
Tumor
0.6
616
Normal
0.6
628
Normal
0.6
955
Tumor
0.5
865
Tumor
0.5
615
Tumor
0.5
746
Normal
0.5
514
Normal
0.5
686
Normal
0.5
627
Tumor
0.5
723
Tumor
0.5
481
Tumor
0.5
664
Normal
0.5
191
Tumor
0.5
1046
Normal
0.5
383
Tumor
0.5
258
Normal
0.5
738
Normal
0.5
364
Normal
0.5
488
Normal
0.5
456
Normal
0.4
662
Normal
0.4
435
Tumor
0.4
366
Normal
0.4
411
Tumor
0.4
466
Normal
0.4
858
Normal
0.4
914
Normal
0.4
922
Normal
0.4
452
Normal
0.4
272
Normal
0.4
866
Normal
0.4
777
Tumor
0.4
824
Normal
0.4
912
Normal
0.4
1043
Tumor
0.4
298
Normal
0.4
1016
Normal
0.4
698
Normal
0.4
882
Normal
0.4
412
Normal
0.4
354
Normal
0.3
954
Normal
0.3
368
Normal
0.3
434
Normal
0.3
128
Normal
0.3
188
Normal
0.3
1022
Normal
0.3
494
Normal
0.3
981
Tumor
0.3
127
Tumor
0.3
883
Tumor
0.3
785
Tumor
0.3
196
Normal
0.3
728
Normal
0.3
648
Normal
0.3
126
Normal
0.3
132
Normal
0.3
966
Normal
0.3
137
Tumor
0.3
1026
Normal
0.3
192
Normal
0.3
114
Normal
0.3
982
Normal
0.3
376
Normal
0.3
426
Normal
0.3
464
Normal
0.3
465
Tumor
0.3
482
Normal
0.3
672
Normal
0.2
916
Normal
0.2
498
Normal
0.2
786
Normal
0.2
487
Tumor
0.2
142
Normal
0.2
911
Tumor
0.2
968
Normal
0.2
816
Normal
0.2
1042
Normal
0.2
526
Normal
0.2
361
Tumor
0.2
428
Normal
0.2
145
Tumor
0.2
214
Normal
0.2
696
Normal
0.2
727
Tumor
0.2
741
Tumor
0.2
492
Normal
0.2
976
Normal
0.2
111
Normal
0.2
416
Normal
0.2
484
Normal
0.2
212
Normal
0.2
917
Tumor
0.2
918
Normal
0.2
546
Normal
0.2
984
Normal
0.2
938
Normal
0.2
956
Normal
0.2
138
Normal
0.2
1028
Normal
0.1
396
Normal
0.1
528
Normal
0.1
187
Tumor
0.1
554
Normal
0.1
1032
Normal
0.1
353
Tumor
0.1
232
Normal
0.1
818
Normal
0.1
392
Normal
0.1
963
Tumor
0.1
952
Normal
0.1
342
Normal
0.1
365
Tumor
0.1
647
Tumor
0.1
862
Normal
0.1
431
Tumor
0.1
978
Normal
0.1
124
Normal
0.1
472
Normal
0.1
286
Normal
0.1
913
Tumor
0.1
666
Normal
0.1
172
Normal
0.1
394
Normal
0.1
572
Normal
0.1
1015
Tumor
0.1
721
Tumor
0.1
186
Normal
0.1
455
Tumor
0.1
744
Normal
0.1
267
Tumor
0.1
284
Normal
0.1
493
Tumor
0.1
642
Normal
0.1
852
Normal
0.0
358
Normal
0.0
636
Normal
0.0
713
Tumor
0.0
268
Normal
0.0
415
Tumor
0.0
433
Tumor
0.0
873
Tumor
0.0
384
Normal
0.0
423
Tumor
0.0
451
Tumor
0.0
953
Tumor
0.0
222
Normal
0.0
863
Tumor
0.0
448
Normal
0.0
516
Normal
0.0
312
Normal
0.0
715
Tumor
0.0
497
Tumor
0.0
756
Normal
0.0
523
Tumor
0.0
421
Tumor
0.0
388
Normal
0.0
924
Normal
0.0
1013
Tumor
0.0
975
Tumor
0.0
113
Tumor
0.0
344
Normal
0.0
161
Tumor
0.0
864
Normal
0.0
356
Normal
0.0
211
Tumor
0.0
874
Normal
0.0
518
Normal
-0.1
957
Tumor
-0.1
737
Tumor
-0.1
297
Tumor
-0.1
311
Tumor
-0.1
877
Tumor
-0.1
868
Normal
-0.1
112
Tumor
-0.1
861
Tumor
-0.1
341
Tumor
-0.1
213
Tumor
-0.1
618
Normal
-0.1
665
Tumor
-0.1
574
Normal
-0.1
357
Tumor
-0.1
462
Normal
-0.1
937
Tumor
-0.1
148
Normal
-0.1
524
Normal
-0.1
227
Tumor
-0.1
923
Tumor
-0.1
195
Tumor
-0.1
332
Normal
-0.1
231
Tumor
-0.1
414
Normal
-0.1
1014
Normal
-0.1
695
Tumor
-0.1
538
Normal
-0.1
553
Tumor
-0.1
328
Normal
-0.2
474
Normal
-0.2
446
Normal
-0.2
1044
Normal
-0.2
314
Normal
-0.2
478
Normal
-0.2
483
Tumor
-0.2
926
Normal
-0.2
491
Tumor
-0.2
355
Tumor
-0.2
146
Normal
-0.2
393
Tumor
-0.2
386
Normal
-0.2
755
Tumor
-0.2
352
Normal
-0.2
224
Normal
-0.2
671
Tumor
-0.2
363
Tumor
-0.2
461
Tumor
-0.2
851
Tumor
-0.2
424
Normal
-0.2
427
Tumor
-0.2
697
Tumor
-0.3
977
Tumor
-0.3
635
Tumor
-0.3
661
Tumor
-0.3
444
Normal
-0.3
525
Tumor
-0.3
271
Tumor
-0.3
185
Tumor
-0.3
1027
Tumor
-0.3
477
Tumor
-0.3
814
Normal
-0.3
778
Normal
-0.3
217
Tumor
-0.3
218
Normal
-0.3
375
Tumor
-0.3
557
Tumor
-0.3
823
Tumor
-0.3
171
Tumor
-0.3
445
Tumor
-0.3
221
Tumor
-0.3
685
Tumor
-0.3
564
Normal
-0.3
147
Tumor
-0.4
563
Tumor
-0.4
527
Tumor
-0.4
925
Tumor
-0.4
136
Normal
-0.4
571
Tumor
-0.4
641
Tumor
-0.4
223
Tumor
-0.4
867
Tumor
-0.4
536
Normal
-0.4
1041
Tumor
-0.4
257
Tumor
-0.4
983
Tumor
-0.4
568
Normal
-0.4
135
Tumor
-0.4
463
Tumor
-0.5
443
Tumor
-0.5
558
Normal
-0.5
141
Tumor
-0.5
471
Tumor
-0.5
473
Tumor
-0.5
881
Tumor
-0.5
278
Normal
-0.5
515
Tumor
-0.5
573
Tumor
-0.5
545
Tumor
-0.5
351
Tumor
-0.5
447
Tumor
-0.5
617
Tumor
-0.6
125
Tumor
-0.6
327
Tumor
-0.6
385
Tumor
-0.7
813
Tumor
-0.7
331
Tumor
-0.7
965
Tumor
-0.7
343
Tumor
-0.7
425
Tumor
-0.7
123
Tumor
-0.8
367
Tumor
-0.8
391
Tumor
-0.8
1021
Tumor
-0.8
1031
Tumor
-0.8
1025
Tumor
-0.8
535
Tumor
-0.8
967
Tumor
-0.8
387
Tumor
-0.8
567
Tumor
-0.8
921
Tumor
-0.9
533
Tumor
-0.9
951
Tumor
-0.9
395
Tumor
-0.9
277
Tumor
-0.9
413
Tumor
-0.9
815
Tumor
-0.9
283
Tumor
-0.9
537
Tumor
-1.0
817
Tumor
-1.1
517
Tumor
-1.3
131
Tumor
-1.3
743
Tumor
-1.3
285
Tumor
-1.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
