MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.3 nTPM
HPA Brain:20.1 nTPM
GTEx:13.3 nTPM
FANTOM5:10.4 Scaled Tags Per Million
Pig:23.3 nTPM
Mouse:8.9 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 20.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.5
1833 Male, age 53, unknown 18.3
1870 Female, age 42, unknown 17.8
2411 Female, age 72, unknown 17.8
2666 Male, age 74, left hemisphere 16.9
1827 Male, age 72, unknown 16.8
2219 Male, age 76, both hemispheres 16.5
2828 Female, age 72, unknown 16.5
1830 Male, age 51, unknown 15.2
2019 Male, age 18, unknown 14.9
2586 Male, age 75, left hemisphere 14.4
Dorsal raphe nucleus
nTPM: 19.1
2047 Male, age 72, unknown 20.5
2750 Male, age 76, both hemispheres 20.0
2298 Female, age 72, unknown 18.6
1828 Male, age 53, unknown 18.5
2016 Female, age 72, unknown 17.8
Inferior colliculus
nTPM: 18.7
2849 Male, age 72, unknown 18.9
1848 Female, age 42, unknown 18.7
1890 Male, age 53, unknown 18.7
2097 Female, age 72, unknown 18.4
Median raphe nucleus
nTPM: 20.1
2220 Male, age 76, midline 20.1
Periaquaductal grey, anterior
nTPM: 18.1
1947 Male, age 18, unknown 20.3
2502 Female, age 75, unknown 17.2
1795 Male, age 51, unknown 16.8
Periaquaductal grey, dorsal
nTPM: 19.0
2850 Male, age 76, both hemispheres 22.9
1840 Male, age 53, unknown 19.7
2464 Female, age 72, unknown 17.7
1831 Male, age 72, unknown 15.5
Periaquaductal grey, lateral
nTPM: 18.8
2140 Male, age 76, both hemispheres 20.5
2053 Male, age 18, unknown 18.9
2272 Male, age 74, both hemispheres 16.8
Pretectal area
nTPM: 17.6
2273 Male, age 74, both hemispheres 20.1
2224 Female, age 72, unknown 19.2
2316 Male, age 76, right hemisphere 19.2
1816 Male, age 51, unknown 17.6
1817 Female, age 42, unknown 17.5
2825 Male, age 18, unknown 17.2
1944 Female, age 72, unknown 17.0
2007 Male, age 72, unknown 16.9
1815 Male, age 53, unknown 16.7
2407 Male, age 75, both hemispheres 16.5
2667 Female, age 75, unknown 15.3
Red nucleus
nTPM: 16.9
2725 Female, age 75, unknown 22.6
1904 Male, age 53, unknown 18.7
1821 Female, age 72, unknown 18.3
2823 Male, age 76, right hemisphere 18.3
1865 Male, age 51, unknown 18.2
1954 Female, age 42, unknown 16.5
2227 Male, age 72, unknown 15.8
2503 Female, age 72, unknown 15.2
2785 Male, age 18, unknown 15.2
2769 Male, age 72, unknown 15.1
2584 Male, age 75, left hemisphere 14.7
2588 Male, age 74, left hemisphere 14.5
Substantia nigra
nTPM: 19.6
1916 Female, age 42, unknown 29.0
2241 Male, age 72, unknown 26.2
1851 Male, age 51, unknown 21.1
2699 Male, age 18, unknown 20.2
1889 Female, age 72, unknown 18.0
2409 Female, age 72, unknown 17.5
2590 Female, age 75, unknown 17.0
2665 Male, age 74, both hemispheres 16.3
1941 Male, age 53, unknown 15.9
2583 Male, age 75, right hemisphere 14.5
Superior colliculus
nTPM: 17.4
2587 Male, age 74, left hemisphere 19.4
1895 Male, age 76, right hemisphere 18.3
2087 Female, age 72, unknown 17.8
2261 Male, age 18, unknown 17.8
1839 Male, age 51, unknown 17.5
2668 Female, age 75, unknown 17.4
1796 Male, age 53, unknown 17.3
1995 Male, age 72, unknown 17.0
1913 Female, age 42, unknown 16.0
2664 Male, age 75, both hemispheres 15.4
Ventral tegmental area
nTPM: 17.4
1915 Female, age 42, unknown 19.1
2218 Male, age 76, both hemispheres 18.5
2021 Male, age 53, unknown 17.3
1942 Male, age 51, unknown 16.7
2410 Female, age 72, unknown 16.6
2223 Female, age 72, unknown 16.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 13.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.3
Samples: 139

Max nTPM: 25.1
Min nTPM: 8.1
Std nTPM: 2.4
Median nTPM: 12.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 25.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 20.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 20.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 19.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 18.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 17.8
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 17.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 17.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 17.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 17.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 16.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 10.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.4
FF:10158-103A5 76 years, female 10.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 23.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.9
Samples: 4

Max nTPM: 26.1
Min nTPM: 18.9
Sample A Female 18.9
Sample B Female 23.2
Sample C Male 23.2
Sample D Male 26.1
Midbrain
nTPM: 23.3
Samples: 4

Max nTPM: 24.5
Min nTPM: 22.3
Sample A Female 22.3
Sample B Female 22.6
Sample C Male 23.8
Sample D Male 24.5
Periaqueductal gray
nTPM: 23.3
Samples: 3

Max nTPM: 26.5
Min nTPM: 19.6
Sample B Female 23.7
Sample C Male 19.6
Sample D Male 26.5
Superior colliculi
nTPM: 21.9
Samples: 4

Max nTPM: 24.1
Min nTPM: 18.5
Sample A Female 18.5
Sample B Female 21.8
Sample C Male 24.1
Sample D Male 23.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 8.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.9
Samples: 4

Max nTPM: 9.6
Min nTPM: 8.3
Sample A Male 9.6
Sample B Male 8.6
Sample C Female 8.9
Sample D Female 8.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
68924805 Antisense, RP_050309_01_A09, Mouse strain C57BL/6J (56 days, male) 0.5

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