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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
USO1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
65.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
60.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
51.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
47.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
44.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
44.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
44.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
44.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
42.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
41.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
41.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
40.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
40.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
39.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
39.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
37.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
37.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
37.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
36.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
36.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
34.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
34.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
33.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
32.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
32.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
32.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
32.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
32.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
32.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
32.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
32.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
32.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
31.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
31.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
31.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
31.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
31.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
30.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
30.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
30.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
30.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
30.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
30.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
30.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
29.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
29.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
29.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
29.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
29.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
28.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
28.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
28.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
28.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
27.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
27.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
27.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
26.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
26.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
26.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
26.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
26.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
26.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
26.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
25.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
25.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
25.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
25.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
25.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
24.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
24.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
24.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
24.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
24.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
24.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
23.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
23.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
23.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
23.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
23.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
23.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
23.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
23.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
22.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
22.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
22.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
22.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
22.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
21.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
21.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
21.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
21.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
21.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
20.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
20.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
20.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
20.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
20.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
20.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
19.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
18.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
18.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
17.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
17.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
17.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
USO1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.8
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
65.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
52.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
50.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
46.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
44.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
42.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
42.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
42.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
42.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
42.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
42.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
41.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
40.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
40.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
39.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
39.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
38.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
38.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
38.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
38.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
38.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
38.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
38.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
38.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
38.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
37.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
37.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
37.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
36.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
36.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
36.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
36.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
36.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
36.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
35.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
35.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
35.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
35.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
35.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
34.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
34.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
34.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
34.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
34.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
34.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
34.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
34.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
34.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
33.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
33.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
33.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
32.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
32.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
32.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
32.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
32.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
32.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
32.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
31.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
31.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
31.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
31.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
31.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
31.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
31.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
31.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
31.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
30.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
30.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
30.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
30.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
30.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
30.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
30.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
29.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
29.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
29.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
29.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
29.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
29.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
29.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
29.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
29.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
28.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
28.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
28.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
28.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
28.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
28.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
28.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
28.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
28.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
28.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
27.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
27.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
27.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
27.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
27.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
26.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
26.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
26.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
26.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
26.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
26.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
26.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
26.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
26.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
26.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
26.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
25.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
25.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
25.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
25.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
25.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
25.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
25.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
25.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
25.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
24.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
24.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
24.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
24.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
24.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
24.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
23.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
23.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
23.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
23.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
22.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
22.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
21.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
21.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
21.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
20.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
19.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
19.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
18.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
16.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
327
Tumor
0.8
123
Tumor
0.7
223
Tumor
0.7
727
Tumor
0.7
481
Tumor
0.7
1043
Tumor
0.6
487
Tumor
0.6
1025
Tumor
0.6
341
Tumor
0.5
395
Tumor
0.5
713
Tumor
0.5
1015
Tumor
0.5
527
Tumor
0.4
285
Tumor
0.4
868
Normal
0.4
617
Tumor
0.4
195
Tumor
0.4
743
Tumor
0.4
353
Tumor
0.4
523
Tumor
0.4
728
Normal
0.4
514
Normal
0.4
113
Tumor
0.4
937
Tumor
0.4
746
Normal
0.4
137
Tumor
0.3
528
Normal
0.3
1026
Normal
0.3
482
Normal
0.3
474
Normal
0.3
722
Normal
0.3
286
Normal
0.3
952
Normal
0.3
1044
Normal
0.3
864
Normal
0.3
696
Normal
0.3
1014
Normal
0.3
145
Tumor
0.3
738
Normal
0.3
721
Tumor
0.3
778
Normal
0.3
984
Normal
0.3
212
Normal
0.3
558
Normal
0.3
1016
Normal
0.3
723
Tumor
0.3
564
Normal
0.3
218
Normal
0.3
462
Normal
0.3
786
Normal
0.3
698
Normal
0.3
911
Tumor
0.3
978
Normal
0.3
412
Normal
0.2
965
Tumor
0.2
918
Normal
0.2
647
Tumor
0.2
518
Normal
0.2
1042
Normal
0.2
981
Tumor
0.2
526
Normal
0.2
228
Normal
0.2
472
Normal
0.2
913
Tumor
0.2
141
Tumor
0.2
912
Normal
0.2
714
Normal
0.2
554
Normal
0.2
922
Normal
0.2
1021
Tumor
0.2
755
Tumor
0.2
816
Normal
0.2
955
Tumor
0.2
368
Normal
0.2
257
Tumor
0.2
824
Normal
0.2
1022
Normal
0.2
356
Normal
0.2
926
Normal
0.2
968
Normal
0.2
924
Normal
0.2
114
Normal
0.2
284
Normal
0.2
111
Normal
0.2
426
Normal
0.2
416
Normal
0.2
136
Normal
0.2
867
Tumor
0.2
1028
Normal
0.2
944
Normal
0.2
874
Normal
0.2
258
Normal
0.2
568
Normal
0.2
648
Normal
0.2
546
Normal
0.2
534
Normal
0.2
1046
Normal
0.2
124
Normal
0.2
162
Normal
0.2
446
Normal
0.2
328
Normal
0.2
756
Normal
0.2
642
Normal
0.2
858
Normal
0.2
393
Tumor
0.2
724
Normal
0.2
187
Tumor
0.2
448
Normal
0.2
664
Normal
0.2
958
Normal
0.2
716
Normal
0.2
851
Tumor
0.2
742
Normal
0.2
436
Normal
0.2
966
Normal
0.2
125
Tumor
0.2
494
Normal
0.2
186
Normal
0.2
191
Tumor
0.2
148
Normal
0.1
914
Normal
0.1
884
Normal
0.1
332
Normal
0.1
852
Normal
0.1
964
Normal
0.1
635
Tumor
0.1
414
Normal
0.1
261
Tumor
0.1
396
Normal
0.1
686
Normal
0.1
132
Normal
0.1
214
Normal
0.1
232
Normal
0.1
982
Normal
0.1
866
Normal
0.1
956
Normal
0.1
314
Normal
0.1
636
Normal
0.1
524
Normal
0.1
278
Normal
0.1
138
Normal
0.1
172
Normal
0.1
463
Tumor
0.1
488
Normal
0.1
262
Normal
0.1
188
Normal
0.1
662
Normal
0.1
358
Normal
0.1
422
Normal
0.1
745
Tumor
0.1
882
Normal
0.1
312
Normal
0.1
628
Normal
0.1
1032
Normal
0.1
392
Normal
0.1
484
Normal
0.1
428
Normal
0.1
386
Normal
0.1
452
Normal
0.1
376
Normal
0.1
445
Tumor
0.1
468
Normal
0.1
434
Normal
0.1
364
Normal
0.1
272
Normal
0.1
976
Normal
0.1
862
Normal
0.1
464
Normal
0.1
456
Normal
0.1
432
Normal
0.1
222
Normal
0.1
492
Normal
0.1
878
Normal
0.1
128
Normal
0.1
572
Normal
0.1
424
Normal
0.1
443
Tumor
0.1
126
Normal
0.1
478
Normal
0.1
938
Normal
0.1
618
Normal
0.1
616
Normal
0.1
142
Normal
0.0
574
Normal
0.0
466
Normal
0.0
467
Tumor
0.0
362
Normal
0.0
818
Normal
0.0
536
Normal
0.0
666
Normal
0.0
298
Normal
0.0
394
Normal
0.0
916
Normal
0.0
196
Normal
0.0
1027
Tumor
0.0
224
Normal
0.0
388
Normal
0.0
366
Normal
0.0
537
Tumor
0.0
957
Tumor
0.0
283
Tumor
0.0
516
Normal
0.0
535
Tumor
0.0
146
Normal
0.0
161
Tumor
0.0
744
Normal
0.0
217
Tumor
0.0
665
Tumor
0.0
557
Tumor
0.0
344
Normal
0.0
951
Tumor
0.0
352
Normal
0.0
354
Normal
0.0
813
Tumor
0.0
672
Normal
0.0
342
Normal
0.0
268
Normal
-0.1
387
Tumor
-0.1
954
Normal
-0.1
415
Tumor
-0.1
361
Tumor
-0.1
421
Tumor
-0.1
917
Tumor
-0.1
563
Tumor
-0.1
697
Tumor
-0.1
815
Tumor
-0.1
921
Tumor
-0.1
915
Tumor
-0.1
863
Tumor
-0.1
515
Tumor
-0.1
861
Tumor
-0.1
135
Tumor
-0.1
147
Tumor
-0.1
785
Tumor
-0.1
171
Tumor
-0.1
444
Normal
-0.1
567
Tumor
-0.1
355
Tumor
-0.1
384
Normal
-0.1
498
Normal
-0.1
943
Tumor
-0.1
538
Normal
-0.1
471
Tumor
-0.1
814
Normal
-0.2
427
Tumor
-0.2
112
Tumor
-0.2
391
Tumor
-0.2
817
Tumor
-0.2
473
Tumor
-0.2
517
Tumor
-0.2
227
Tumor
-0.2
777
Tumor
-0.2
435
Tumor
-0.2
383
Tumor
-0.2
211
Tumor
-0.2
497
Tumor
-0.2
231
Tumor
-0.2
461
Tumor
-0.2
192
Normal
-0.2
823
Tumor
-0.2
925
Tumor
-0.2
451
Tumor
-0.2
685
Tumor
-0.2
741
Tumor
-0.2
923
Tumor
-0.2
881
Tumor
-0.2
433
Tumor
-0.2
865
Tumor
-0.2
1045
Tumor
-0.2
365
Tumor
-0.2
185
Tumor
-0.2
413
Tumor
-0.2
715
Tumor
-0.2
967
Tumor
-0.2
1041
Tumor
-0.2
571
Tumor
-0.3
221
Tumor
-0.3
977
Tumor
-0.3
883
Tumor
-0.3
363
Tumor
-0.3
695
Tumor
-0.3
343
Tumor
-0.3
447
Tumor
-0.3
983
Tumor
-0.3
553
Tumor
-0.3
385
Tumor
-0.3
271
Tumor
-0.3
331
Tumor
-0.3
1031
Tumor
-0.3
663
Tumor
-0.3
423
Tumor
-0.3
661
Tumor
-0.3
641
Tumor
-0.3
525
Tumor
-0.3
431
Tumor
-0.3
873
Tumor
-0.4
213
Tumor
-0.4
367
Tumor
-0.4
483
Tumor
-0.4
857
Tumor
-0.4
267
Tumor
-0.4
963
Tumor
-0.4
513
Tumor
-0.4
277
Tumor
-0.4
573
Tumor
-0.4
545
Tumor
-0.4
477
Tumor
-0.4
455
Tumor
-0.4
877
Tumor
-0.4
311
Tumor
-0.5
375
Tumor
-0.5
491
Tumor
-0.5
493
Tumor
-0.5
533
Tumor
-0.5
127
Tumor
-0.5
975
Tumor
-0.5
131
Tumor
-0.5
465
Tumor
-0.5
737
Tumor
-0.5
671
Tumor
-0.5
615
Tumor
-0.6
425
Tumor
-0.6
627
Tumor
-0.6
297
Tumor
-0.6
351
Tumor
-0.6
313
Tumor
-0.6
1013
Tumor
-0.7
357
Tumor
-0.7
953
Tumor
-0.8
411
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
