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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HNRNPD is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
69.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
273.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
212.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
210.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
206.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
196.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
196.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
188.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
178.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
175.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
170.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
167.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
166.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
164.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
164.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
163.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
153.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
152.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
150.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
148.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
147.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
146.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
143.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
143.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
143.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
140.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
139.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
136.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
135.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
132.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
131.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
129.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
126.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
125.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
124.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
120.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
120.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
119.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
116.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
116.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
114.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
113.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
111.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
111.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
111.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
110.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
109.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
109.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
108.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
108.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
107.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
106.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
106.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
105.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
99.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
99.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
99.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
98.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
97.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
97.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
96.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
96.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
96.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
95.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
95.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
94.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
92.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
92.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
90.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
90.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
90.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
90.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
89.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
89.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
89.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
88.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
88.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
88.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
88.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
88.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
87.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
87.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
87.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
86.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
86.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
86.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
85.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
84.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
84.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
84.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
84.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
84.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
84.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
83.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
83.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
83.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
82.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
82.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
81.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
81.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
81.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
81.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
81.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
80.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
80.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
79.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
79.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
79.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
78.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
78.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
77.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
76.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
76.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
76.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
76.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
75.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
75.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
75.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
75.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
74.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
74.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
74.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
74.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
73.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
73.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
73.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
73.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
73.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
73.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
72.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
72.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
72.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
72.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
72.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
72.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
72.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
71.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
71.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
71.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
71.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
70.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
70.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
69.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
69.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
69.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
69.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
68.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
68.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
68.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
67.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
67.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
67.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
67.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
67.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
67.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
66.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
66.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
66.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
66.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
66.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
66.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
66.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
66.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
66.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
65.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
64.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
64.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
64.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
64.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
64.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
64.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
63.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
63.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
63.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
63.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
63.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
63.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
63.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
63.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
63.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
62.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
62.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
62.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
62.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
62.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
62.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
62.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
62.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
62.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
62.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
61.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
61.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
61.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
61.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
61.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
61.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
61.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
60.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
60.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
60.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
60.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
59.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
59.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
59.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
58.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
58.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
58.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
57.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
56.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
56.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
56.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
56.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
55.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
55.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
55.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
55.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
54.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
54.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
54.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
54.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
54.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
53.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
53.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
53.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
53.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
52.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
52.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
52.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
52.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
51.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
51.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
51.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
50.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
50.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
50.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
50.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
50.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
50.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
50.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
49.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
49.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
49.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
49.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
49.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
49.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
49.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
48.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
48.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
48.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
48.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
48.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
48.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
48.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
47.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
47.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
47.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
47.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
46.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
46.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
46.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
46.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
46.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
45.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
45.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
45.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
44.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
44.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
44.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
43.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
43.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
43.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
43.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
42.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
42.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
42.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
42.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
42.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
42.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
42.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
42.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
42.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
41.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
41.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
41.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
40.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
40.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
40.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
40.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
40.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
40.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
39.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
39.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
39.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
38.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
38.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
37.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
36.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
36.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
35.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
34.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
34.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
34.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
34.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
34.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
34.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
34.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
33.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
33.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
33.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
33.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
32.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
32.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
32.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
32.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
32.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
31.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
31.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
31.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
31.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
31.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
30.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
30.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
30.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
30.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
30.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
30.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
29.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
29.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
28.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
28.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
28.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
27.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
27.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
26.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
26.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
25.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
25.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
25.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
24.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
24.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
23.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
23.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
22.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
21.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
20.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
20.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
20.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
20.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
19.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
17.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
17.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
17.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
17.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
15.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
15.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
13.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HNRNPD is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
60.2
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
190.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
169.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
138.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
129.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
125.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
119.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
118.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
115.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
113.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
109.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
108.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
104.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
104.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
103.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
103.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
102.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
101.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
99.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
99.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
98.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
96.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
96.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
94.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
94.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
91.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
90.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
89.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
86.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
85.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
85.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
85.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
84.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
82.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
81.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
81.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
81.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
79.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
79.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
79.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
77.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
77.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
76.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
76.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
75.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
74.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
74.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
74.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
74.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
74.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
74.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
73.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
73.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
73.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
73.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
72.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
71.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
70.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
70.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
70.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
70.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
70.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
69.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
69.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
69.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
68.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
68.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
68.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
67.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
67.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
67.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
67.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
67.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
67.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
66.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
66.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
66.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
66.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
66.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
65.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
65.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
65.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
64.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
64.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
63.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
63.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
63.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
62.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
61.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
61.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
60.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
60.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
60.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
60.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
60.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
59.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
59.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
59.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
59.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
59.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
59.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
58.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
58.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
58.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
58.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
58.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
58.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
57.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
57.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
57.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
57.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
57.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
57.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
57.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
56.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
56.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
55.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
55.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
55.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
54.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
54.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
53.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
53.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
53.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
53.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
52.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
52.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
52.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
51.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
51.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
51.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
51.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
51.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
51.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
51.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
51.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
50.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
50.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
50.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
50.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
50.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
49.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
49.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
49.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
49.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
49.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
48.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
48.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
48.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
48.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
48.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
48.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
48.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
48.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
48.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
47.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
47.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
47.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
47.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
47.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
46.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
46.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
45.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
45.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
45.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
45.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
45.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
45.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
45.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
45.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
44.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
44.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
43.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
43.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
43.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
43.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
43.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
42.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
41.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
41.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
41.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
41.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
41.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
41.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
40.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
40.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
40.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
40.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
40.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
39.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
39.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
39.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
39.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
38.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
38.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
38.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
38.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
38.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
38.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
38.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
37.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
37.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
37.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
37.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
36.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
36.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
36.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
35.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
35.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
35.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
35.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
34.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
34.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
34.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
33.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
32.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
32.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
32.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
31.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
31.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
31.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
30.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
30.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
29.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
28.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
27.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
27.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
26.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
26.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
25.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
21.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
0.8
285
Tumor
0.7
123
Tumor
0.6
965
Tumor
0.6
355
Tumor
0.6
367
Tumor
0.6
523
Tumor
0.5
661
Tumor
0.5
487
Tumor
0.5
341
Tumor
0.5
351
Tumor
0.5
277
Tumor
0.5
271
Tumor
0.5
877
Tumor
0.5
943
Tumor
0.4
131
Tumor
0.4
957
Tumor
0.4
881
Tumor
0.4
211
Tumor
0.4
724
Normal
0.4
431
Tumor
0.4
497
Tumor
0.4
443
Tumor
0.4
463
Tumor
0.4
545
Tumor
0.4
715
Tumor
0.4
1025
Tumor
0.4
385
Tumor
0.4
695
Tumor
0.4
331
Tumor
0.4
444
Normal
0.4
867
Tumor
0.3
1015
Tumor
0.3
983
Tumor
0.3
473
Tumor
0.3
161
Tumor
0.3
1041
Tumor
0.3
135
Tumor
0.3
917
Tumor
0.3
517
Tumor
0.3
635
Tumor
0.3
425
Tumor
0.3
535
Tumor
0.3
977
Tumor
0.3
141
Tumor
0.3
663
Tumor
0.3
647
Tumor
0.3
478
Normal
0.3
447
Tumor
0.3
283
Tumor
0.3
113
Tumor
0.3
433
Tumor
0.3
755
Tumor
0.3
227
Tumor
0.3
112
Tumor
0.2
313
Tumor
0.2
492
Normal
0.2
963
Tumor
0.2
498
Normal
0.2
524
Normal
0.2
538
Normal
0.2
192
Normal
0.2
814
Normal
0.2
861
Tumor
0.2
434
Normal
0.2
146
Normal
0.2
984
Normal
0.2
911
Tumor
0.2
221
Tumor
0.2
916
Normal
0.2
267
Tumor
0.2
297
Tumor
0.2
411
Tumor
0.2
191
Tumor
0.2
975
Tumor
0.2
571
Tumor
0.2
553
Tumor
0.2
1031
Tumor
0.2
375
Tumor
0.2
967
Tumor
0.2
865
Tumor
0.2
455
Tumor
0.2
563
Tumor
0.2
352
Normal
0.2
363
Tumor
0.1
268
Normal
0.1
343
Tumor
0.1
467
Tumor
0.1
937
Tumor
0.1
671
Tumor
0.1
573
Tumor
0.1
915
Tumor
0.1
785
Tumor
0.1
126
Normal
0.1
493
Tumor
0.1
878
Normal
0.1
413
Tumor
0.1
1021
Tumor
0.1
471
Tumor
0.1
921
Tumor
0.1
727
Tumor
0.1
817
Tumor
0.1
383
Tumor
0.1
187
Tumor
0.1
393
Tumor
0.1
415
Tumor
0.1
721
Tumor
0.1
125
Tumor
0.1
536
Normal
0.1
445
Tumor
0.1
737
Tumor
0.1
185
Tumor
0.1
257
Tumor
0.1
311
Tumor
0.1
516
Normal
0.1
813
Tumor
0.1
145
Tumor
0.1
744
Normal
0.1
966
Normal
0.1
815
Tumor
0.1
344
Normal
0.1
741
Tumor
0.1
636
Normal
0.0
491
Tumor
0.0
955
Tumor
0.0
427
Tumor
0.0
124
Normal
0.0
213
Tumor
0.0
958
Normal
0.0
685
Tumor
0.0
421
Tumor
0.0
954
Normal
0.0
138
Normal
0.0
617
Tumor
0.0
298
Normal
0.0
641
Tumor
0.0
384
Normal
0.0
387
Tumor
0.0
546
Normal
0.0
188
Normal
0.0
951
Tumor
0.0
423
Tumor
0.0
686
Normal
0.0
1014
Normal
0.0
883
Tumor
0.0
114
Normal
0.0
978
Normal
0.0
938
Normal
0.0
698
Normal
0.0
488
Normal
0.0
874
Normal
0.0
224
Normal
0.0
537
Tumor
0.0
567
Tumor
0.0
866
Normal
0.0
628
Normal
0.0
662
Normal
0.0
527
Tumor
0.0
362
Normal
0.0
923
Tumor
0.0
395
Tumor
0.0
261
Tumor
0.0
665
Tumor
0.0
262
Normal
0.0
672
Normal
0.0
312
Normal
0.0
777
Tumor
0.0
461
Tumor
0.0
925
Tumor
0.0
882
Normal
0.0
376
Normal
0.0
196
Normal
0.0
412
Normal
0.0
778
Normal
0.0
284
Normal
-0.1
964
Normal
-0.1
136
Normal
-0.1
981
Tumor
-0.1
554
Normal
-0.1
212
Normal
-0.1
472
Normal
-0.1
278
Normal
-0.1
713
Tumor
-0.1
148
Normal
-0.1
968
Normal
-0.1
132
Normal
-0.1
142
Normal
-0.1
342
Normal
-0.1
484
Normal
-0.1
386
Normal
-0.1
716
Normal
-0.1
217
Tumor
-0.1
922
Normal
-0.1
432
Normal
-0.1
332
Normal
-0.1
424
Normal
-0.1
448
Normal
-0.1
851
Tumor
-0.1
1028
Normal
-0.1
231
Tumor
-0.1
664
Normal
-0.1
494
Normal
-0.1
1013
Tumor
-0.1
272
Normal
-0.1
534
Normal
-0.1
924
Normal
-0.1
111
Normal
-0.1
864
Normal
-0.1
128
Normal
-0.1
918
Normal
-0.1
361
Tumor
-0.1
483
Tumor
-0.1
952
Normal
-0.1
354
Normal
-0.1
396
Normal
-0.1
1016
Normal
-0.1
327
Tumor
-0.1
714
Normal
-0.1
873
Tumor
-0.1
944
Normal
-0.1
738
Normal
-0.1
746
Normal
-0.1
884
Normal
-0.1
456
Normal
-0.1
422
Normal
-0.1
926
Normal
-0.1
858
Normal
-0.1
364
Normal
-0.1
742
Normal
-0.1
435
Tumor
-0.1
862
Normal
-0.1
1044
Normal
-0.1
913
Tumor
-0.1
162
Normal
-0.1
428
Normal
-0.1
366
Normal
-0.1
127
Tumor
-0.1
1045
Tumor
-0.1
786
Normal
-0.1
368
Normal
-0.1
186
Normal
-0.1
514
Normal
-0.1
976
Normal
-0.1
446
Normal
-0.1
436
Normal
-0.1
147
Tumor
-0.1
823
Tumor
-0.1
696
Normal
-0.1
214
Normal
-0.1
392
Normal
-0.1
525
Tumor
-0.1
314
Normal
-0.1
912
Normal
-0.1
474
Normal
-0.1
518
Normal
-0.1
451
Tumor
-0.1
481
Tumor
-0.2
462
Normal
-0.2
528
Normal
-0.2
223
Tumor
-0.2
756
Normal
-0.2
468
Normal
-0.2
728
Normal
-0.2
568
Normal
-0.2
558
Normal
-0.2
526
Normal
-0.2
426
Normal
-0.2
358
Normal
-0.2
956
Normal
-0.2
533
Tumor
-0.2
572
Normal
-0.2
356
Normal
-0.2
195
Tumor
-0.2
466
Normal
-0.2
137
Tumor
-0.2
482
Normal
-0.2
228
Normal
-0.2
477
Tumor
-0.2
1046
Normal
-0.2
982
Normal
-0.2
1032
Normal
-0.2
1022
Normal
-0.2
564
Normal
-0.2
365
Tumor
-0.2
648
Normal
-0.2
824
Normal
-0.2
394
Normal
-0.2
574
Normal
-0.2
465
Tumor
-0.2
557
Tumor
-0.2
218
Normal
-0.2
416
Normal
-0.2
1043
Tumor
-0.2
857
Tumor
-0.2
1026
Normal
-0.2
818
Normal
-0.2
914
Normal
-0.2
666
Normal
-0.2
1042
Normal
-0.2
618
Normal
-0.2
414
Normal
-0.2
171
Tumor
-0.2
953
Tumor
-0.2
452
Normal
-0.2
388
Normal
-0.2
232
Normal
-0.2
286
Normal
-0.2
852
Normal
-0.3
391
Tumor
-0.3
357
Tumor
-0.3
642
Normal
-0.3
222
Normal
-0.3
172
Normal
-0.3
723
Tumor
-0.3
258
Normal
-0.3
868
Normal
-0.3
515
Tumor
-0.3
464
Normal
-0.3
816
Normal
-0.3
616
Normal
-0.3
863
Tumor
-0.3
722
Normal
-0.3
697
Tumor
-0.3
328
Normal
-0.3
1027
Tumor
-0.4
513
Tumor
-0.4
353
Tumor
-0.5
745
Tumor
-0.5
627
Tumor
-0.6
615
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
