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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMARCAL1 is not prognostic in Kidney Chromophobe (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.5
Number of samples
64
Samples
Sample
Description
TPM
TCGA-KN-8432-01A
0 years, female, white, stage:Stage II, alive, 76 days
27.1
TCGA-KL-8333-01A
0 years, male, white, stage:Stage II, alive, 2991 days
18.5
TCGA-KN-8427-01A
0 years, male, white, stage:Stage IV, alive, 30 days
14.9
TCGA-KL-8343-01A
0 years, male, white, stage:Stage III, dead, 2172 days
14.5
TCGA-KM-8639-01A
0 years, male, white, stage:Stage I, alive, 953 days
12.5
TCGA-KN-8419-01A
0 years, male, black or african american, stage:Stage II, alive, 714 days
12.2
TCGA-KL-8336-01A
0 years, female, white, stage:Stage IV, dead, 920 days
11.9
TCGA-KL-8344-01A
0 years, male, white, stage:Stage III, alive, 876 days
11.5
TCGA-KL-8331-01A
0 years, female, white, stage:Stage II, alive, 3010 days
11.5
TCGA-KL-8329-01A
0 years, female, asian, stage:Stage I, alive, 2752 days
10.6
TCGA-KM-8439-01A
0 years, male, white, stage:Stage I, alive, 708 days
10.3
TCGA-KO-8411-01A
0 years, male, white, stage:Stage I, alive, 3958 days
10.2
TCGA-KN-8434-01A
0 years, female, white, stage:Stage II, alive, 1797 days
9.8
TCGA-KM-8441-01A
0 years, female, white, stage:Stage I, alive, 876 days
9.6
TCGA-KN-8423-01A
0 years, male, white, stage:Stage I, alive, 788 days
9.2
TCGA-KN-8437-01A
0 years, female, white, stage:Stage I, alive, 3068 days
8.6
TCGA-KN-8436-01A
0 years, male, white, stage:Stage II, alive, 1288 days
8.6
TCGA-KN-8429-01A
0 years, female, white, stage:Stage III, alive, 2650 days
8.2
TCGA-KN-8433-01A
0 years, female, white, stage:Stage III, alive, 341 days
7.8
TCGA-KO-8404-01A
0 years, male, white, stage:Stage IV, dead, 325 days
7.4
TCGA-KN-8426-01A
0 years, male, white, stage:Stage IV, alive, 108 days
7.3
TCGA-KL-8323-01A
0 years, female, white, stage:Stage III, dead, 1158 days
7.2
TCGA-KM-8440-01A
0 years, male, black or african american, stage:Stage III, alive, 1366 days
6.9
TCGA-KN-8435-01A
0 years, male, white, stage:Stage II, alive, 3498 days
6.7
TCGA-KM-8442-01A
0 years, male, stage:Stage II, alive, 1437 days
5.8
TCGA-KL-8338-01A
0 years, male, white, stage:Stage III, alive, 2633 days
5.6
TCGA-KN-8421-01A
0 years, female, white, stage:Stage II, alive, 2674 days
5.5
TCGA-KN-8428-01A
0 years, male, white, stage:Stage II, dead, 1590 days
5.2
TCGA-KO-8417-01A
0 years, female, white, stage:Stage I, alive, 2815 days
5.0
TCGA-KO-8410-01A
0 years, female, white, stage:Stage I, alive, 3136 days
4.9
TCGA-KL-8337-01A
0 years, male, black or african american, stage:Stage II, alive, 1364 days
4.8
TCGA-KL-8326-01A
0 years, male, white, stage:Stage III, alive, 3322 days
4.7
TCGA-KL-8339-01A
0 years, male, white, stage:Stage IV, dead, 855 days
4.7
TCGA-KO-8414-01A
0 years, female, white, stage:Stage II, alive, 3212 days
4.7
TCGA-KN-8425-01A
0 years, male, white, stage:Stage I, alive, 3179 days
4.6
TCGA-KL-8345-01A
0 years, male, white, stage:Stage III, alive, 1665 days
4.6
TCGA-KL-8330-01A
0 years, female, black or african american, stage:Stage II, alive, 3304 days
4.6
TCGA-KO-8406-01A
0 years, female, white, stage:Stage I, alive, 3145 days
4.5
TCGA-KL-8334-01A
0 years, female, white, stage:Stage III, alive, 2949 days
4.4
TCGA-KO-8413-01A
0 years, male, white, stage:Stage I, alive, 3038 days
4.4
TCGA-KL-8325-01A
0 years, female, white, stage:Stage II, dead, 725 days
4.3
TCGA-KO-8405-01A
0 years, male, white, stage:Stage III, alive, 3056 days
4.3
TCGA-KM-8477-01A
0 years, male, white, stage:Stage I, alive, 1553 days
4.2
TCGA-KL-8341-01A
0 years, male, asian, stage:Stage IV, dead, 754 days
4.1
TCGA-KO-8407-01A
0 years, male, white, stage:Stage II, alive, 2820 days
3.9
TCGA-KL-8346-01A
0 years, male, white, stage:Stage II, alive, 1897 days
3.9
TCGA-KM-8443-01A
0 years, male, white, stage:Stage II, alive, 1520 days
3.9
TCGA-KL-8328-01A
0 years, male, white, stage:Stage II, alive, 3127 days
3.8
TCGA-KL-8342-01A
0 years, female, white, stage:Stage II, alive, 2248 days
3.8
TCGA-KN-8418-01A
0 years, female, white, stage:Stage II, alive, 3935 days
3.7
TCGA-KL-8340-01A
0 years, male, white, stage:Stage II, alive, 2024 days
3.7
TCGA-KL-8324-01A
0 years, female, white, stage:Stage II, alive, 4676 days
3.4
TCGA-KL-8332-01A
0 years, male, white, stage:Stage I, alive, 2582 days
3.3
TCGA-KO-8408-01A
0 years, male, white, stage:Stage III, dead, 507 days
3.2
TCGA-KO-8415-01A
0 years, female, white, stage:Stage I, alive, 2939 days
3.2
TCGA-KO-8403-01A
0 years, male, white, stage:Stage I, alive, 3208 days
3.2
TCGA-KO-8416-01A
0 years, male, white, stage:Stage III, alive, 2752 days
3.0
TCGA-KM-8438-01A
0 years, female, white, stage:Stage II, alive, 4622 days
2.7
TCGA-KN-8424-01A
0 years, female, white, stage:Stage I, alive, 1983 days
2.7
TCGA-KL-8327-01A
0 years, female, white, stage:Stage I, alive, 4169 days
2.6
TCGA-KM-8476-01A
0 years, male, white, stage:Stage I, alive, 3745 days
2.4
TCGA-KN-8431-01A
0 years, female, stage:Stage II, alive, 588 days
2.4
TCGA-KO-8409-01A
0 years, male, white, stage:Stage II, alive, 3180 days
2.2
TCGA-KL-8335-01A
0 years, male, white, stage:Stage III, alive, 2815 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMARCAL1 is potential prognostic, high expression is favorable in Kidney Renal Clear Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.6
Number of samples
521
Samples
Sample
Description
TPM
TCGA-CZ-4860-01A
0 years, male, white, stage:Stage IV, dead, 206 days
25.4
TCGA-B4-5843-01A
0 years, male, white, stage:Stage I, alive, 11 days
23.3
TCGA-B8-5159-01A
0 years, female, white, stage:Stage I, alive, 722 days
21.4
TCGA-CW-5587-01A
0 years, female, white, stage:Stage III, alive, 2226 days
20.5
TCGA-BP-4354-01A
0 years, male, white, stage:Stage IV, dead, 1034 days
20.4
TCGA-CW-6097-01A
0 years, male, white, stage:Stage III, dead, 571 days
20.1
TCGA-A3-A8CQ-01A
0 years, female, black or african american, stage:Stage I, alive, 3 days
19.8
TCGA-BP-4763-01A
0 years, female, white, stage:Stage I, dead, 1270 days
19.7
TCGA-CW-6088-01A
0 years, male, white, stage:Stage I, alive, 3222 days
19.4
TCGA-B0-5699-01A
0 years, male, white, stage:Stage I, alive, 3841 days
19.0
TCGA-CW-5580-01A
0 years, female, white, stage:Stage IV, dead, 1964 days
19.0
TCGA-A3-3382-01A
0 years, male, white, stage:Stage I, alive, 574 days
18.6
TCGA-AK-3450-01A
0 years, female, white, stage:Stage I, alive, 1508 days
18.4
TCGA-CZ-4858-01A
0 years, male, white, stage:Stage II, dead, 2105 days
18.1
TCGA-CJ-6032-01A
0 years, female, white, stage:Stage II, alive, 3639 days
18.1
TCGA-B0-5710-01A
0 years, male, white, stage:Stage I, alive, 2430 days
17.8
TCGA-B8-5164-01A
0 years, male, white, stage:Stage III, alive, 26 days
17.7
TCGA-B0-5098-01A
0 years, female, black or african american, stage:Stage I, dead, 1584 days
17.7
TCGA-B0-4698-01A
0 years, male, white, stage:Stage IV, dead, 42 days
17.5
TCGA-CJ-5671-01A
0 years, male, white, stage:Stage I, alive, 3987 days
17.5
TCGA-BP-4340-01A
0 years, female, white, stage:Stage I, dead, 562 days
17.4
TCGA-CW-5583-01A
0 years, female, white, stage:Stage I, alive, 2489 days
17.3
TCGA-CW-5584-01A
0 years, male, white, stage:Stage III, dead, 164 days
17.2
TCGA-BP-4161-01A
0 years, male, white, stage:Stage I, alive, 2746 days
17.2
TCGA-A3-3349-01A
0 years, female, white, stage:Stage I, alive, 1385 days
17.1
TCGA-CJ-4876-01A
0 years, male, white, stage:Stage II, alive, 1955 days
17.1
TCGA-CJ-4640-01A
0 years, male, white, stage:Stage III, alive, 3480 days
16.9
TCGA-CZ-4862-01A
0 years, male, white, stage:Stage I, alive, 3271 days
16.9
TCGA-CW-6087-01A
0 years, male, white, stage:Stage IV, dead, 41 days
16.9
TCGA-B0-4848-01A
0 years, male, white, stage:Stage III, dead, 883 days
16.8
TCGA-CZ-5462-01A
0 years, male, white, stage:Stage IV, dead, 311 days
16.7
TCGA-CW-5581-01A
0 years, male, white, stage:Stage I, alive, 2799 days
16.7
TCGA-B2-5636-01A
0 years, male, white, stage:Stage I, alive, 919 days
16.7
TCGA-CJ-4634-01A
0 years, female, white, stage:Stage I, alive, 3498 days
16.7
TCGA-BP-4353-01A
0 years, male, white, stage:Stage I, dead, 375 days
16.6
TCGA-A3-3376-01A
0 years, male, black or african american, stage:Stage I, dead, 1696 days
16.6
TCGA-CJ-5686-01A
0 years, female, white, stage:Stage I, alive, 2038 days
16.5
TCGA-EU-5906-01A
0 years, male, white, stage:Stage I, alive, 206 days
16.5
TCGA-B2-4102-01A
0 years, male, white, stage:Stage I, alive, 952 days
16.4
TCGA-A3-3383-01A
0 years, male, white, stage:Stage I, alive, 861 days
16.4
TCGA-GK-A6C7-01A
0 years, female, black or african american, stage:Stage I, alive, 61 days
16.3
TCGA-EU-5905-01A
0 years, female, white, stage:Stage I, alive, 119 days
16.3
TCGA-B0-5096-01A
0 years, female, white, stage:Stage III, dead, 68 days
16.2
TCGA-T7-A92I-01A
0 years, female, black or african american, stage:Stage I, alive, 356 days
16.1
TCGA-CJ-5672-01A
0 years, male, white, stage:Stage I, dead, 1972 days
16.1
TCGA-A3-3351-01A
0 years, male, white, stage:Stage II, alive, 910 days
16.1
TCGA-CJ-4893-01A
0 years, female, white, stage:Stage I, alive, 750 days
16.1
TCGA-CJ-5680-01A
0 years, female, white, stage:Stage IV, dead, 768 days
16.1
TCGA-CW-5585-01A
0 years, male, white, stage:Stage IV, alive, 2609 days
16.1
TCGA-B4-5838-01A
0 years, male, white, stage:'--, alive, 166 days
16.1
TCGA-B4-5836-01A
0 years, female, white, stage:Stage I, alive, 141 days
16.1
TCGA-B8-A54H-01A
0 years, female, black or african american, stage:Stage II, alive, 256 days
16.0
TCGA-BP-5187-01A
0 years, male, white, stage:Stage I, alive, 406 days
16.0
TCGA-BP-4766-01A
0 years, female, white, stage:Stage I, alive, 1462 days
16.0
TCGA-BP-4775-01A
0 years, female, white, stage:Stage I, alive, 1843 days
15.9
TCGA-B0-5709-01A
0 years, female, white, stage:Stage III, alive, 3974 days
15.9
TCGA-B8-5550-01A
0 years, male, white, stage:Stage III, alive, 1476 days
15.9
TCGA-CZ-5469-01A
0 years, male, white, stage:Stage II, dead, 946 days
15.8
TCGA-BP-4790-01A
0 years, male, white, stage:Stage I, dead, 1111 days
15.8
TCGA-BP-4768-01A
0 years, female, white, stage:Stage I, alive, 400 days
15.7
TCGA-B0-5693-01A
0 years, female, white, stage:Stage I, alive, 4074 days
15.7
TCGA-B0-5711-01A
0 years, male, white, stage:Stage III, alive, 3989 days
15.7
TCGA-CZ-5461-01A
0 years, male, white, stage:Stage IV, dead, 330 days
15.7
TCGA-A3-3347-01A
0 years, female, white, stage:Stage III, dead, 1610 days
15.6
TCGA-CW-5590-01A
0 years, male, white, stage:Stage IV, dead, 1075 days
15.6
TCGA-B0-5713-01A
0 years, female, white, stage:Stage III, alive, 2782 days
15.5
TCGA-BP-4970-01A
0 years, male, asian, stage:Stage III, alive, 433 days
15.5
TCGA-CZ-5456-01A
0 years, male, white, stage:Stage II, alive, 2422 days
15.5
TCGA-B0-5701-01A
0 years, male, white, stage:Stage III, alive, 2461 days
15.5
TCGA-B0-5402-01A
0 years, male, white, stage:Stage IV, alive, 1290 days
15.5
TCGA-B8-5553-01A
0 years, female, white, stage:Stage I, alive, 435 days
15.4
TCGA-CJ-5675-01A
0 years, male, white, stage:Stage II, alive, 3936 days
15.4
TCGA-BP-4173-01A
0 years, male, white, stage:Stage II, alive, 1893 days
15.3
TCGA-CJ-4644-01A
0 years, female, white, stage:Stage IV, dead, 336 days
15.3
TCGA-CJ-4901-01A
0 years, male, white, stage:Stage III, alive, 1450 days
15.3
TCGA-CZ-5455-01A
0 years, male, white, stage:Stage IV, dead, 561 days
15.2
TCGA-EU-5904-01A
0 years, female, white, stage:Stage I, alive, 551 days
15.2
TCGA-CZ-4861-01A
0 years, male, white, stage:Stage II, dead, 446 days
15.2
TCGA-BP-5174-01A
0 years, female, white, stage:Stage I, alive, 2257 days
15.1
TCGA-BP-4965-01A
0 years, male, white, stage:Stage I, alive, 1871 days
15.1
TCGA-B0-4710-01A
0 years, female, white, stage:Stage III, alive, 1755 days
15.1
TCGA-CW-5588-01A
0 years, female, white, stage:Stage I, alive, 2017 days
15.0
TCGA-B4-5834-01A
0 years, male, white, stage:Stage I, alive, 38 days
15.0
TCGA-BP-4983-01A
0 years, female, asian, stage:Stage III, alive, 1413 days
15.0
TCGA-B4-5377-01A
0 years, female, white, stage:Stage IV, alive, 365 days
14.9
TCGA-B0-5690-01A
0 years, female, white, stage:Stage I, alive, 3392 days
14.9
TCGA-A3-A6NL-01A
0 years, female, black or african american, stage:Stage I, alive, 689 days
14.8
TCGA-B0-4814-01A
0 years, male, white, stage:Stage IV, dead, 168 days
14.8
TCGA-BP-4343-01A
0 years, male, white, stage:Stage III, dead, 1912 days
14.8
TCGA-CJ-4643-01A
0 years, female, white, stage:Stage II, alive, 1793 days
14.8
TCGA-B0-5119-01A
0 years, female, white, stage:Stage I, alive, 1552 days
14.8
TCGA-B0-5705-01A
0 years, female, white, stage:Stage I, alive, 4537 days
14.8
TCGA-B8-4143-01A
0 years, female, white, stage:Stage IV, dead, 709 days
14.7
TCGA-A3-3320-01A
0 years, female, white, stage:Stage I, alive, 1508 days
14.7
TCGA-B8-5158-01A
0 years, male, white, stage:Stage III, alive, 1218 days
14.7
TCGA-CZ-4863-01A
0 years, female, white, stage:Stage III, alive, 1928 days
14.7
TCGA-CJ-4639-01A
0 years, female, white, stage:Stage II, alive, 3229 days
14.7
TCGA-BP-5200-01A
0 years, male, white, stage:Stage II, alive, 1063 days
14.6
TCGA-BP-4163-01A
0 years, female, white, stage:Stage III, alive, 2839 days
14.6
TCGA-BP-4162-01A
0 years, female, white, stage:Stage I, alive, 3074 days
14.6
TCGA-B0-4846-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
14.6
TCGA-AS-3778-01A
0 years, male, white, stage:Stage I, alive, 43 days
14.6
TCGA-CZ-5986-01A
0 years, male, white, stage:Stage I, alive, 373 days
14.6
TCGA-BP-4781-01A
0 years, male, white, stage:Stage I, alive, 2080 days
14.6
TCGA-BP-4982-01A
0 years, male, white, stage:Stage I, alive, 1014 days
14.6
TCGA-CJ-6030-01A
0 years, male, white, stage:Stage I, dead, 2299 days
14.5
TCGA-BP-5196-01A
0 years, male, white, stage:Stage I, alive, 1018 days
14.5
TCGA-B0-5084-01A
0 years, male, white, stage:Stage IV, dead, 222 days
14.4
TCGA-BP-4342-01A
0 years, male, white, stage:Stage II, dead, 2256 days
14.4
TCGA-CJ-4905-01A
0 years, female, white, stage:Stage I, alive, 1496 days
14.4
TCGA-A3-3308-01A
0 years, female, white, stage:Stage III, alive, 16 days
14.4
TCGA-AK-3429-01A
0 years, female, white, stage:Stage II, alive, 3328 days
14.4
TCGA-B2-5639-01A
0 years, male, white, stage:Stage IV, dead, 1003 days
14.4
TCGA-B8-5545-01A
0 years, male, black or african american, stage:Stage I, alive, 1525 days
14.4
TCGA-B8-5551-01A
0 years, female, black or african american, stage:Stage I, alive, 16 days
14.4
TCGA-BP-5181-01A
0 years, female, white, stage:Stage I, alive, 1495 days
14.4
TCGA-CJ-4908-01A
0 years, male, white, stage:Stage I, alive, 1531 days
14.3
TCGA-CJ-5682-01A
0 years, male, white, stage:Stage IV, alive, 3736 days
14.3
TCGA-CJ-4637-01A
0 years, female, white, stage:Stage IV, dead, 2227 days
14.3
TCGA-A3-3387-01A
0 years, male, white, stage:Stage I, alive, 617 days
14.3
TCGA-CJ-4635-01A
0 years, male, white, stage:Stage I, alive, 1416 days
14.3
TCGA-A3-3326-01A
0 years, male, white, stage:Stage I, alive, 1137 days
14.3
TCGA-B4-5378-01A
0 years, male, white, stage:Stage I, alive, 175 days
14.3
TCGA-CJ-4894-01A
0 years, male, white, stage:Stage III, dead, 841 days
14.2
TCGA-DV-5567-01A
0 years, female, black or african american, stage:Stage I, alive, 2004 days
14.2
TCGA-BP-4795-01A
0 years, female, white, stage:Stage I, alive, 620 days
14.2
TCGA-B0-5080-01A
0 years, male, white, stage:Stage IV, dead, 342 days
14.1
TCGA-3Z-A93Z-01A
0 years, male, black or african american, stage:Stage I, alive, 385 days
14.1
TCGA-B2-A4SR-01A
0 years, male, black or african american, stage:Stage II, alive, 507 days
14.1
TCGA-CW-5591-01A
0 years, male, white, stage:Stage IV, alive, 2271 days
14.1
TCGA-CJ-6028-01A
0 years, male, white, stage:Stage IV, dead, 1625 days
14.0
TCGA-CZ-5451-01A
0 years, male, white, stage:Stage II, alive, 1929 days
14.0
TCGA-CJ-4886-01A
0 years, female, white, stage:Stage I, alive, 1952 days
14.0
TCGA-B8-A54K-01A
0 years, male, black or african american, stage:Stage I, alive, 469 days
14.0
TCGA-BP-4170-01A
0 years, female, white, stage:Stage I, dead, 2343 days
13.9
TCGA-B0-5691-01A
0 years, female, white, stage:Stage I, alive, 3431 days
13.9
TCGA-BP-4331-01A
0 years, male, white, stage:Stage I, dead, 2454 days
13.8
TCGA-B0-5097-01A
0 years, female, white, stage:Stage III, alive, 665 days
13.8
TCGA-BP-5180-01A
0 years, male, white, stage:Stage I, alive, 2263 days
13.8
TCGA-B0-5110-01A
0 years, female, white, stage:Stage I, alive, 2009 days
13.8
TCGA-B8-5163-01A
0 years, female, white, stage:Stage III, alive, 822 days
13.7
TCGA-B8-5165-01A
0 years, male, white, stage:Stage I, alive, 737 days
13.7
TCGA-CJ-4907-01A
0 years, male, white, stage:Stage III, alive, 1499 days
13.7
TCGA-A3-3317-01A
0 years, male, stage:Stage II, alive, 1491 days
13.7
TCGA-CW-5589-01A
0 years, male, white, stage:Stage I, alive, 2378 days
13.7
TCGA-B0-4810-01A
0 years, male, white, stage:Stage III, dead, 478 days
13.7
TCGA-CZ-5988-01A
0 years, male, white, stage:Stage I, alive, 693 days
13.7
TCGA-A3-3306-01A
0 years, male, white, stage:Stage I, alive, 1120 days
13.7
TCGA-CJ-4895-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
13.7
TCGA-CZ-5458-01A
0 years, male, white, stage:Stage III, alive, 2789 days
13.6
TCGA-B0-5692-01A
0 years, female, white, stage:Stage III, alive, 3944 days
13.6
TCGA-B8-4622-01A
0 years, male, white, stage:Stage IV, alive, 1525 days
13.6
TCGA-DV-5566-01A
0 years, female, white, stage:Stage I, alive, 1398 days
13.6
TCGA-BP-4174-01A
0 years, male, white, stage:Stage II, alive, 1879 days
13.6
TCGA-DV-5575-01A
0 years, female, white, stage:Stage I, alive, 1729 days
13.6
TCGA-CW-6090-01A
0 years, male, white, stage:Stage I, alive, 2552 days
13.5
TCGA-CZ-5452-01A
0 years, male, white, stage:Stage II, alive, 1789 days
13.5
TCGA-B0-5712-01A
0 years, female, black or african american, stage:Stage IV, alive, 2722 days
13.5
TCGA-CJ-5677-01A
0 years, female, white, stage:Stage IV, dead, 782 days
13.5
TCGA-CZ-4859-01A
0 years, female, white, stage:Stage I, alive, 1787 days
13.5
TCGA-BP-5004-01A
0 years, male, white, stage:Stage I, alive, 1126 days
13.4
TCGA-MM-A563-01A
0 years, male, black or african american, stage:'--, alive, 591 days
13.4
TCGA-A3-3331-01A
0 years, female, white, stage:Stage I, alive, 1257 days
13.4
TCGA-BP-4769-01A
0 years, male, white, stage:Stage I, alive, 1876 days
13.4
TCGA-A3-A8OW-01A
0 years, male, black or african american, stage:Stage III, alive, 323 days
13.4
TCGA-B2-5633-01A
0 years, male, white, stage:Stage I, alive, 963 days
13.4
TCGA-CJ-4872-01A
0 years, male, white, stage:Stage I, alive, 1435 days
13.3
TCGA-B4-5844-01A
0 years, female, white, stage:Stage II, alive, 7 days
13.3
TCGA-CJ-5676-01A
0 years, male, white, stage:Stage III, alive, 4067 days
13.3
TCGA-BP-5192-01A
0 years, male, white, stage:Stage I, alive, 714 days
13.2
TCGA-CZ-4853-01A
0 years, male, white, stage:Stage I, alive, 774 days
13.2
TCGA-CZ-5457-01A
0 years, male, white, stage:Stage III, alive, 2754 days
13.2
TCGA-A3-3365-01A
0 years, male, white, stage:Stage I, alive, 873 days
13.2
TCGA-CJ-5681-01A
0 years, female, white, stage:Stage IV, dead, 552 days
13.1
TCGA-CW-6093-01A
0 years, male, white, stage:Stage I, alive, 3146 days
13.1
TCGA-A3-3372-01A
0 years, male, white, stage:Stage III, alive, 735 days
13.1
TCGA-CJ-4920-01A
0 years, female, white, stage:Stage I, dead, 139 days
13.1
TCGA-B0-5113-01A
0 years, female, white, stage:Stage III, alive, 1175 days
13.1
TCGA-CZ-5465-01A
0 years, female, stage:Stage III, dead, 2564 days
13.1
TCGA-CJ-4641-01A
0 years, female, white, stage:Stage IV, dead, 1661 days
13.1
TCGA-BP-4801-01A
0 years, male, white, stage:Stage I, alive, 1124 days
13.0
TCGA-B0-5812-01A
0 years, male, white, stage:Stage I, alive, 3834 days
13.0
TCGA-A3-3346-01A
0 years, male, white, stage:Stage I, dead, 137 days
13.0
TCGA-BP-5184-01A
0 years, male, white, stage:Stage I, alive, 1133 days
13.0
TCGA-BP-5183-01A
0 years, male, white, stage:Stage III, alive, 1291 days
13.0
TCGA-BP-4961-01A
0 years, male, white, stage:Stage I, alive, 1935 days
13.0
TCGA-BP-4993-01A
0 years, male, white, stage:Stage I, alive, 177 days
13.0
TCGA-CJ-6033-01A
0 years, female, white, stage:Stage IV, dead, 224 days
13.0
TCGA-B0-5694-01A
0 years, male, white, stage:Stage III, dead, 480 days
13.0
TCGA-B0-5695-01A
0 years, female, white, stage:Stage I, alive, 2150 days
12.9
TCGA-A3-3343-01A
0 years, male, white, stage:Stage II, alive, 945 days
12.9
TCGA-BP-5194-01A
0 years, male, white, stage:Stage I, alive, 408 days
12.9
TCGA-A3-A6NN-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
12.9
TCGA-B2-4101-01A
0 years, male, white, stage:Stage II, alive, 648 days
12.9
TCGA-BP-4986-01A
0 years, male, white, stage:Stage I, alive, 785 days
12.8
TCGA-BP-4344-01A
0 years, female, white, stage:Stage I, alive, 1666 days
12.8
TCGA-B0-5399-01A
0 years, male, white, stage:Stage I, alive, 1411 days
12.8
TCGA-BP-4169-01A
0 years, female, white, stage:Stage II, dead, 701 days
12.8
TCGA-BP-4782-01A
0 years, female, white, stage:Stage I, alive, 354 days
12.8
TCGA-CZ-5984-01A
0 years, male, white, stage:Stage I, alive, 2067 days
12.8
TCGA-A3-3378-01A
0 years, male, white, stage:Stage I, alive, 630 days
12.8
TCGA-B0-5107-01A
0 years, female, white, stage:Stage IV, dead, 927 days
12.8
TCGA-BP-4325-01A
0 years, female, white, stage:Stage I, alive, 2964 days
12.8
TCGA-BP-5186-01A
0 years, female, white, stage:Stage I, alive, 693 days
12.7
TCGA-CJ-4899-01A
0 years, male, asian, stage:Stage I, alive, 1528 days
12.7
TCGA-BP-4347-01A
0 years, male, white, stage:Stage III, alive, 1367 days
12.7
TCGA-BP-5189-01A
0 years, male, white, stage:Stage I, dead, 822 days
12.6
TCGA-BP-4346-01A
0 years, male, white, stage:Stage III, dead, 1493 days
12.6
TCGA-A3-A6NI-01A
0 years, male, black or african american, stage:Stage I, alive, 1018 days
12.6
TCGA-CJ-4903-01A
0 years, male, white, stage:Stage I, alive, 1560 days
12.6
TCGA-AK-3445-01A
0 years, male, white, stage:Stage III, alive, 2392 days
12.6
TCGA-BP-5007-01A
0 years, male, white, stage:Stage II, alive, 1140 days
12.6
TCGA-BP-4976-01A
0 years, male, white, stage:Stage I, alive, 1632 days
12.6
TCGA-B8-A54J-01A
0 years, male, black or african american, stage:Stage II, alive, 528 days
12.5
TCGA-A3-3367-01A
0 years, male, white, stage:Stage I, alive, 2270 days
12.5
TCGA-A3-3352-01A
0 years, male, white, stage:Stage III, dead, 561 days
12.5
TCGA-A3-3359-01A
0 years, female, white, stage:Stage I, alive, 2504 days
12.5
TCGA-B0-4836-01A
0 years, male, white, stage:Stage IV, dead, 1238 days
12.5
TCGA-B0-5095-01A
0 years, male, white, stage:Stage III, dead, 245 days
12.5
TCGA-CZ-4857-01A
0 years, male, white, stage:Stage IV, dead, 1432 days
12.5
TCGA-B8-A7U6-01A
0 years, female, black or african american, stage:Stage I, alive, 495 days
12.4
TCGA-BP-4789-01A
0 years, male, white, stage:Stage I, alive, 1489 days
12.4
TCGA-BP-4760-01A
0 years, male, black or african american, stage:Stage I, alive, 2361 days
12.3
TCGA-CJ-4897-01A
0 years, female, white, stage:Stage III, alive, 3341 days
12.3
TCGA-A3-3370-01A
0 years, female, white, stage:Stage I, alive, 2274 days
12.3
TCGA-B8-4148-01A
0 years, female, white, stage:Stage I, alive, 1520 days
12.3
TCGA-CZ-4865-01A
0 years, female, white, stage:Stage I, dead, 166 days
12.3
TCGA-A3-3362-01A
0 years, female, white, stage:Stage I, alive, 1559 days
12.3
TCGA-BP-4803-01A
0 years, male, white, stage:Stage III, alive, 204 days
12.2
TCGA-B0-4827-01A
0 years, female, white, stage:Stage III, dead, 885 days
12.2
TCGA-BP-4807-01A
0 years, male, white, stage:Stage I, alive, 211 days
12.2
TCGA-CZ-5470-01A
0 years, female, stage:Stage II, alive, 386 days
12.2
TCGA-CJ-4904-01A
0 years, female, white, stage:Stage IV, alive, 3302 days
12.2
TCGA-BP-4987-01A
0 years, female, asian, stage:Stage I, alive, 1124 days
12.1
TCGA-AK-3431-01A
0 years, female, white, stage:Stage II, dead, 2241 days
12.1
TCGA-A3-3324-01A
0 years, male, white, stage:Stage I, alive, 1186 days
12.1
TCGA-BP-4349-01A
0 years, female, white, stage:Stage I, alive, 372 days
12.1
TCGA-BP-4338-01A
0 years, male, white, stage:Stage I, alive, 2859 days
12.0
TCGA-BP-5170-01A
0 years, male, white, stage:Stage I, alive, 2412 days
12.0
TCGA-BP-5201-01A
0 years, male, white, stage:Stage IV, alive, 951 days
12.0
TCGA-BP-4797-01A
0 years, male, white, stage:Stage III, alive, 1107 days
12.0
TCGA-CJ-4889-01A
0 years, female, white, stage:Stage I, alive, 1946 days
12.0
TCGA-A3-3319-01A
0 years, male, white, stage:Stage I, alive, 1130 days
12.0
TCGA-BP-4804-01A
0 years, male, white, stage:Stage I, alive, 1459 days
12.0
TCGA-CJ-4869-01A
0 years, male, white, stage:Stage III, alive, 2554 days
12.0
TCGA-BP-4787-01A
0 years, female, white, stage:Stage IV, dead, 480 days
12.0
TCGA-BP-4998-01A
0 years, male, asian, stage:Stage I, alive, 932 days
12.0
TCGA-B0-5094-01A
0 years, male, white, stage:Stage IV, dead, 333 days
11.9
TCGA-BP-4784-01A
0 years, female, white, stage:Stage I, alive, 1854 days
11.9
TCGA-A3-3307-01A
0 years, male, stage:Stage III, alive, 1436 days
11.9
TCGA-CJ-4874-01A
0 years, female, white, stage:Stage I, alive, 2283 days
11.9
TCGA-A3-3329-01A
0 years, male, white, stage:Stage I, alive, 1624 days
11.9
TCGA-DV-5576-01A
0 years, female, black or african american, stage:Stage I, dead, 727 days
11.8
TCGA-BP-4765-01A
0 years, male, white, stage:Stage I, alive, 2184 days
11.8
TCGA-B0-4690-01A
0 years, male, white, stage:Stage IV, dead, 43 days
11.8
TCGA-CJ-6031-01A
0 years, male, white, stage:Stage I, alive, 1906 days
11.8
TCGA-DV-A4W0-01A
0 years, male, black or african american, stage:Stage I, alive, 2470 days
11.8
TCGA-CJ-4892-01A
0 years, female, white, stage:Stage I, alive, 1521 days
11.8
TCGA-B8-4151-01A
0 years, female, white, stage:Stage III, alive, 1299 days
11.8
TCGA-B0-5102-01A
0 years, female, white, stage:Stage I, dead, 2764 days
11.8
TCGA-B0-5697-01A
0 years, male, white, stage:Stage I, alive, 2630 days
11.8
TCGA-G6-A8L8-01A
0 years, female, black or african american, stage:Stage I, dead, 1091 days
11.8
TCGA-B0-4837-01A
0 years, male, white, stage:Stage I, dead, 1378 days
11.7
TCGA-BP-4330-01A
0 years, female, black or african american, stage:Stage III, alive, 1888 days
11.7
TCGA-B0-4688-01A
0 years, male, white, stage:Stage IV, dead, 101 days
11.7
TCGA-EU-5907-01A
0 years, male, white, stage:Stage III, alive, 127 days
11.7
TCGA-B4-5835-01A
0 years, female, white, stage:Stage I, alive, 16 days
11.7
TCGA-CZ-4864-01A
0 years, male, white, stage:Stage II, dead, 1315 days
11.7
TCGA-BP-4770-01A
0 years, female, white, stage:Stage IV, dead, 329 days
11.7
TCGA-BP-4762-01A
0 years, male, white, stage:Stage I, dead, 1343 days
11.7
TCGA-B0-4824-01A
0 years, female, white, stage:Stage I, dead, 1657 days
11.7
TCGA-B0-4816-01A
0 years, male, white, stage:Stage II, dead, 1371 days
11.7
TCGA-DV-A4VX-01A
0 years, male, black or african american, stage:Stage IV, dead, 1626 days
11.7
TCGA-BP-4164-01A
0 years, female, white, stage:Stage III, dead, 992 days
11.6
TCGA-B0-5088-01A
0 years, male, white, stage:Stage I, dead, 563 days
11.6
TCGA-BP-4756-01A
0 years, female, asian, stage:Stage I, alive, 374 days
11.6
TCGA-CZ-5987-01A
0 years, male, white, stage:Stage IV, dead, 445 days
11.6
TCGA-B0-4703-01A
0 years, male, white, stage:Stage IV, dead, 182 days
11.5
TCGA-CJ-5684-01A
0 years, male, white, stage:Stage III, alive, 2231 days
11.5
TCGA-BP-5202-01A
0 years, male, white, stage:Stage III, alive, 29 days
11.5
TCGA-B0-5108-01A
0 years, male, white, stage:Stage III, alive, 1782 days
11.5
TCGA-B0-4701-01A
0 years, female, white, stage:Stage IV, dead, 238 days
11.5
TCGA-CJ-4918-01A
0 years, male, white, stage:Stage IV, dead, 93 days
11.5
TCGA-BP-5195-01A
0 years, male, white, stage:Stage I, alive, 749 days
11.4
TCGA-CZ-5463-01A
0 years, male, white, stage:Stage II, alive, 662 days
11.4
TCGA-B0-4945-01A
0 years, female, white, stage:Stage I, dead, 2145 days
11.4
TCGA-A3-3373-01A
0 years, female, white, stage:Stage I, alive, 1621 days
11.4
TCGA-CJ-4881-01A
0 years, male, white, stage:Stage III, alive, 2014 days
11.4
TCGA-CZ-4856-01A
0 years, female, white, stage:Stage I, alive, 18 days
11.4
TCGA-BP-4972-01A
0 years, female, white, stage:Stage III, alive, 1502 days
11.4
TCGA-A3-3316-01A
0 years, male, white, stage:Stage II, alive, 1493 days
11.3
TCGA-BP-5168-01A
0 years, male, white, stage:Stage I, dead, 1463 days
11.3
TCGA-B0-4823-01A
0 years, male, white, stage:Stage I, dead, 454 days
11.3
TCGA-CZ-4866-01A
0 years, female, white, stage:Stage I, alive, 3267 days
11.3
TCGA-B8-A54E-01A
0 years, female, black or african american, stage:Stage I, alive, 909 days
11.2
TCGA-CZ-5982-01A
0 years, female, white, stage:Stage I, alive, 2439 days
11.2
TCGA-DV-5573-01A
0 years, male, white, stage:Stage I, alive, 1130 days
11.2
TCGA-BP-4977-01A
0 years, male, white, stage:Stage I, alive, 454 days
11.2
TCGA-CJ-4868-01A
0 years, male, white, stage:Stage IV, dead, 646 days
11.2
TCGA-BP-4975-01A
0 years, male, white, stage:Stage I, alive, 1433 days
11.2
TCGA-BP-5177-01A
0 years, female, white, stage:Stage I, alive, 293 days
11.2
TCGA-B0-4700-01A
0 years, male, white, stage:Stage IV, dead, 1980 days
11.1
TCGA-BP-4774-01A
0 years, female, white, stage:Stage I, alive, 1885 days
11.1
TCGA-CJ-5683-01A
0 years, male, white, stage:Stage I, alive, 1889 days
11.1
TCGA-A3-3335-01A
0 years, male, white, stage:Stage II, alive, 1886 days
11.1
TCGA-B8-A8YJ-01A
0 years, female, black or african american, stage:Stage I, alive, 431 days
11.0
TCGA-DV-5574-01A
0 years, male, white, stage:Stage I, alive, 2016 days
11.0
TCGA-B0-5092-01A
0 years, female, white, stage:Stage IV, dead, 459 days
11.0
TCGA-BP-4964-01A
0 years, female, white, stage:Stage I, alive, 1862 days
11.0
TCGA-BP-4963-01A
0 years, male, white, stage:Stage I, alive, 1834 days
11.0
TCGA-BP-4165-01A
0 years, female, white, stage:Stage I, alive, 3037 days
10.9
TCGA-B2-3924-01A
0 years, male, white, stage:Stage I, alive, 1092 days
10.9
TCGA-BP-5182-01A
0 years, male, white, stage:Stage I, alive, 1165 days
10.9
TCGA-B0-4712-01A
0 years, male, white, stage:Stage IV, dead, 1337 days
10.9
TCGA-A3-A6NJ-01A
0 years, female, black or african american, stage:Stage I, alive, 468 days
10.9
TCGA-CJ-4902-01A
0 years, male, white, stage:Stage III, alive, 1520 days
10.9
TCGA-CJ-4916-01A
0 years, female, white, stage:Stage III, alive, 1373 days
10.9
TCGA-B0-5106-01A
0 years, male, white, stage:Stage I, dead, 1598 days
10.9
TCGA-CZ-5454-01A
0 years, male, white, stage:Stage IV, dead, 722 days
10.9
TCGA-BP-5173-01A
0 years, male, white, stage:Stage I, dead, 62 days
10.9
TCGA-BP-4999-01A
0 years, male, white, stage:Stage I, alive, 1266 days
10.8
TCGA-DV-5569-01A
0 years, female, white, stage:Stage I, alive, 355 days
10.8
TCGA-B0-5696-01A
0 years, male, white, stage:Stage III, alive, 2609 days
10.8
TCGA-B0-4852-01A
0 years, female, white, stage:Stage II, dead, 1121 days
10.7
TCGA-BP-4345-01A
0 years, male, white, stage:Stage III, alive, 1516 days
10.7
TCGA-AK-3428-01A
0 years, male, white, stage:Stage III, alive, 3728 days
10.7
TCGA-BP-4176-01A
0 years, male, white, stage:Stage I, alive, 1955 days
10.7
TCGA-CZ-5459-01A
0 years, male, white, stage:Stage III, alive, 1683 days
10.7
TCGA-BP-4355-01A
0 years, female, white, stage:Stage III, dead, 953 days
10.7
TCGA-A3-3323-01A
0 years, male, white, stage:Stage I, alive, 1106 days
10.7
TCGA-BP-4771-01A
0 years, male, white, stage:Stage IV, dead, 162 days
10.6
TCGA-CJ-5678-01A
0 years, male, black or african american, stage:Stage IV, dead, 574 days
10.6
TCGA-CZ-5460-01A
0 years, male, white, stage:Stage IV, alive, 2873 days
10.6
TCGA-AK-3455-01A
0 years, female, white, stage:Stage III, dead, 683 days
10.6
TCGA-AK-3461-01A
0 years, male, white, stage:Stage I, alive, 2217 days
10.6
TCGA-AK-3434-01A
0 years, male, white, stage:Stage I, alive, 2087 days
10.5
TCGA-B2-5635-01A
0 years, male, white, stage:Stage I, alive, 755 days
10.5
TCGA-BP-4991-01A
0 years, male, white, stage:Stage I, alive, 1413 days
10.4
TCGA-B2-5641-01A
0 years, male, white, stage:Stage I, alive, 656 days
10.4
TCGA-A3-A8OV-01A
0 years, male, black or african american, stage:Stage I, alive, 340 days
10.3
TCGA-6D-AA2E-01A
0 years, female, black or african american, stage:Stage I, alive, 362 days
10.3
TCGA-CJ-4884-01A
0 years, female, white, stage:Stage III, alive, 1759 days
10.3
TCGA-A3-3385-01A
0 years, female, white, stage:Stage I, alive, 1993 days
10.3
TCGA-A3-3358-01A
0 years, female, white, stage:Stage I, alive, 1307 days
10.3
TCGA-BP-4351-01A
0 years, female, white, stage:Stage III, alive, 970 days
10.3
TCGA-BP-4973-01A
0 years, male, white, stage:Stage III, alive, 1384 days
10.3
TCGA-BP-5198-01A
0 years, male, white, stage:Stage III, alive, 603 days
10.2
TCGA-BP-4327-01A
0 years, female, white, stage:Stage II, dead, 109 days
10.2
TCGA-B0-4694-01A
0 years, male, white, stage:Stage III, dead, 106 days
10.2
TCGA-BP-4798-01A
0 years, male, white, stage:'--, dead, 334 days
10.2
TCGA-CJ-4638-01A
0 years, female, white, stage:Stage IV, dead, 431 days
10.1
TCGA-CZ-5467-01A
0 years, female, white, stage:Stage III, dead, 73 days
10.1
TCGA-BP-5176-01A
0 years, female, white, stage:Stage I, dead, 1590 days
10.1
TCGA-B0-4828-01A
0 years, male, white, stage:Stage IV, dead, 307 days
10.1
TCGA-BP-4177-01A
0 years, male, white, stage:Stage I, alive, 1670 days
10.1
TCGA-B0-5077-01A
0 years, male, white, stage:Stage I, dead, 1317 days
10.1
TCGA-CJ-4885-01A
0 years, male, white, stage:Stage IV, alive, 3451 days
10.1
TCGA-BP-4160-01A
0 years, male, white, stage:Stage III, alive, 2881 days
10.0
TCGA-CJ-4882-01A
0 years, male, black or african american, stage:Stage III, alive, 1883 days
10.0
TCGA-B0-4849-01A
0 years, male, white, stage:Stage III, dead, 69 days
10.0
TCGA-B0-4706-01A
0 years, male, white, stage:Stage III, dead, 65 days
9.9
TCGA-B0-5702-01A
0 years, male, white, stage:Stage I, alive, 2172 days
9.9
TCGA-BP-4158-01A
0 years, male, white, stage:Stage I, alive, 3377 days
9.9
TCGA-B0-4691-01A
0 years, male, white, stage:Stage IV, dead, 139 days
9.9
TCGA-B0-4718-01A
0 years, male, white, stage:Stage III, alive, 1778 days
9.9
TCGA-CZ-5985-01A
0 years, male, white, stage:Stage II, alive, 1997 days
9.8
TCGA-CZ-5466-01A
0 years, male, stage:Stage III, alive, 685 days
9.8
TCGA-B0-5100-01A
0 years, male, black or african american, stage:Stage III, dead, 1913 days
9.8
TCGA-BP-4326-01A
0 years, female, white, stage:Stage I, dead, 1625 days
9.8
TCGA-G6-A8L6-01A
0 years, male, black or african american, stage:Stage IV, dead, 313 days
9.8
TCGA-BP-4967-01A
0 years, male, white, stage:Stage III, alive, 205 days
9.7
TCGA-CZ-4854-01A
0 years, male, white, stage:Stage I, dead, 1404 days
9.7
TCGA-DV-5568-01A
0 years, male, white, stage:Stage I, alive, 370 days
9.7
TCGA-B0-4845-01A
0 years, male, white, stage:Stage IV, dead, 1986 days
9.6
TCGA-BP-4974-01A
0 years, male, white, stage:Stage IV, dead, 211 days
9.6
TCGA-A3-3325-01A
0 years, male, white, stage:Stage I, dead, 1170 days
9.6
TCGA-B0-5707-01A
0 years, female, white, stage:Stage I, alive, 3744 days
9.6
TCGA-B0-5703-01A
0 years, male, white, stage:Stage I, alive, 2246 days
9.6
TCGA-BP-4759-01A
0 years, male, white, stage:Stage I, alive, 2372 days
9.5
TCGA-B8-4619-01A
0 years, male, white, stage:Stage I, alive, 523 days
9.5
TCGA-A3-3311-01A
0 years, male, stage:Stage I, dead, 1191 days
9.5
TCGA-CJ-4887-01A
0 years, male, white, stage:Stage IV, dead, 932 days
9.4
TCGA-CZ-5464-01A
0 years, male, white, stage:Stage IV, alive, 2128 days
9.4
TCGA-A3-3357-01A
0 years, male, white, stage:Stage II, alive, 2688 days
9.4
TCGA-MW-A4EC-01A
0 years, female, black or african american, stage:Stage I, alive, 498 days
9.4
TCGA-B2-4099-01A
0 years, male, white, stage:Stage I, alive, 972 days
9.3
TCGA-B0-4843-01A
0 years, male, white, stage:Stage III, dead, 320 days
9.3
TCGA-AK-3456-01A
0 years, male, black or african american, stage:Stage II, alive, 1143 days
9.3
TCGA-A3-3380-01A
0 years, male, stage:Stage I, alive, 567 days
9.3
TCGA-CJ-4890-01A
0 years, male, white, stage:Stage IV, alive, 3519 days
9.3
TCGA-BP-5199-01A
0 years, male, white, stage:Stage II, alive, 1355 days
9.3
TCGA-CJ-4871-01A
0 years, male, white, stage:Stage IV, alive, 2423 days
9.2
TCGA-A3-3322-01A
0 years, male, white, stage:Stage I, alive, 1478 days
9.2
TCGA-B8-5546-01A
0 years, female, black or african american, stage:Stage I, alive, 505 days
9.1
TCGA-CJ-4636-01A
0 years, male, white, stage:Stage III, alive, 1924 days
9.0
TCGA-BP-5006-01A
0 years, male, white, stage:Stage I, alive, 840 days
9.0
TCGA-CJ-4888-01A
0 years, male, white, stage:Stage IV, dead, 1567 days
9.0
TCGA-AK-3460-01A
0 years, male, white, stage:Stage I, alive, 2508 days
9.0
TCGA-B0-5700-01A
0 years, male, white, stage:Stage I, alive, 1790 days
8.9
TCGA-BP-4341-01A
0 years, male, white, stage:Stage III, dead, 1589 days
8.9
TCGA-B8-4154-01A
0 years, female, white, stage:Stage I, alive, 1380 days
8.9
TCGA-CZ-5468-01A
0 years, male, white, stage:Stage IV, dead, 59 days
8.8
TCGA-B0-4693-01A
0 years, female, white, stage:Stage III, dead, 77 days
8.8
TCGA-BP-4337-01A
0 years, female, white, stage:Stage III, dead, 2 days
8.8
TCGA-BP-5001-01A
0 years, female, white, stage:Stage I, alive, 1177 days
8.8
TCGA-B0-4838-01A
0 years, female, white, stage:Stage I, dead, 834 days
8.8
TCGA-B0-5120-01A
0 years, female, white, stage:Stage I, alive, 1169 days
8.8
TCGA-CJ-6027-01A
0 years, male, white, stage:Stage I, dead, 3615 days
8.7
TCGA-B0-5075-01A
0 years, female, white, stage:Stage III, dead, 637 days
8.7
TCGA-B8-A54G-01A
0 years, male, black or african american, stage:Stage I, alive, 53 days
8.6
TCGA-B0-4818-01A
0 years, female, white, stage:Stage II, dead, 510 days
8.6
TCGA-BP-4995-01A
0 years, male, white, stage:Stage I, alive, 1371 days
8.5
TCGA-CJ-4878-01A
0 years, female, white, stage:Stage III, alive, 2186 days
8.5
TCGA-BP-4777-01A
0 years, male, white, stage:Stage I, alive, 1731 days
8.5
TCGA-BP-4968-01A
0 years, male, white, stage:Stage I, alive, 1746 days
8.5
TCGA-B0-4699-01A
0 years, male, white, stage:Stage IV, dead, 110 days
8.4
TCGA-B0-4833-01A
0 years, female, white, stage:Stage I, dead, 2386 days
8.4
TCGA-A3-3363-01A
0 years, male, asian, stage:Stage II, alive, 319 days
8.4
TCGA-BP-4959-01A
0 years, male, white, stage:Stage I, alive, 2660 days
8.4
TCGA-B0-4696-01A
0 years, male, white, stage:Stage III, dead, 866 days
8.4
TCGA-BP-4352-01A
0 years, female, white, stage:Stage IV, dead, 344 days
8.4
TCGA-B0-5081-01A
0 years, female, white, stage:Stage III, dead, 362 days
8.2
TCGA-B8-4621-01A
0 years, male, black or african american, stage:Stage I, alive, 788 days
8.2
TCGA-B8-5162-01A
0 years, male, white, stage:Stage II, alive, 36 days
8.2
TCGA-BP-5008-01A
0 years, male, white, stage:Stage I, alive, 1071 days
8.1
TCGA-AK-3453-01A
0 years, female, white, stage:Stage II, alive, 2531 days
8.1
TCGA-B2-4098-01A
0 years, female, black or african american, stage:Stage I, dead, 51 days
8.1
TCGA-B0-4815-01A
0 years, male, white, stage:Stage III, dead, 1588 days
8.1
TCGA-BP-4962-01A
0 years, male, white, stage:Stage II, alive, 1785 days
8.0
TCGA-B8-5549-01A
0 years, male, white, stage:Stage I, alive, 194 days
8.0
TCGA-BP-4985-01A
0 years, male, white, stage:Stage III, dead, 952 days
8.0
TCGA-B8-A54D-01A
0 years, male, black or african american, stage:Stage III, alive, 830 days
8.0
TCGA-CJ-5679-01A
0 years, male, white, stage:Stage III, dead, 679 days
8.0
TCGA-B8-A54F-01A
0 years, female, black or african american, stage:Stage I, alive, 519 days
7.9
TCGA-B0-4844-01A
0 years, male, white, stage:Stage IV, dead, 313 days
7.9
TCGA-B0-4834-01A
0 years, male, white, stage:Stage I, dead, 2090 days
7.9
TCGA-B0-4847-01A
0 years, male, white, stage:Stage IV, dead, 793 days
7.8
TCGA-B0-4819-01A
0 years, female, white, stage:Stage IV, dead, 183 days
7.8
TCGA-B8-4620-01A
0 years, female, white, stage:Stage III, alive, 777 days
7.8
TCGA-B0-5698-01A
0 years, male, black or african american, stage:Stage I, alive, 3631 days
7.8
TCGA-B0-4714-01A
0 years, male, white, stage:Stage IV, dead, 99 days
7.7
TCGA-B0-4839-01A
0 years, female, white, stage:Stage I, dead, 1639 days
7.6
TCGA-BP-4989-01A
0 years, male, white, stage:Stage III, alive, 118 days
7.6
TCGA-B0-4822-01A
0 years, male, white, stage:Stage II, dead, 1111 days
7.6
TCGA-B0-4842-01A
0 years, female, white, stage:Stage III, dead, 1724 days
7.6
TCGA-AK-3426-01A
0 years, male, white, stage:Stage III, dead, 885 days
7.6
TCGA-A3-3313-01A
0 years, male, black or african american, stage:Stage I, dead, 735 days
7.5
TCGA-BP-4758-01A
0 years, male, white, stage:Stage I, alive, 2208 days
7.5
TCGA-BP-5190-01A
0 years, male, white, stage:Stage I, alive, 1011 days
7.5
TCGA-BP-5178-01A
0 years, male, white, stage:Stage IV, dead, 1912 days
7.5
TCGA-BP-4332-01A
0 years, male, white, stage:Stage III, alive, 1133 days
7.5
TCGA-BP-4329-01A
0 years, male, white, stage:Stage III, dead, 845 days
7.5
TCGA-B0-5116-01A
0 years, male, white, stage:Stage III, alive, 1274 days
7.5
TCGA-BP-5000-01A
0 years, male, white, stage:Stage I, alive, 563 days
7.4
TCGA-CJ-4873-01A
0 years, female, white, stage:Stage III, alive, 1776 days
7.4
TCGA-DV-5565-01A
0 years, male, white, stage:Stage I, alive, 1329 days
7.4
TCGA-MM-A564-01A
0 years, male, black or african american, stage:Stage II, alive, 607 days
7.3
TCGA-BP-4166-01A
0 years, male, white, stage:Stage III, alive, 13 days
7.3
TCGA-B0-5109-01A
0 years, male, white, stage:Stage III, dead, 587 days
7.3
TCGA-BP-4167-01A
0 years, male, white, stage:Stage III, alive, 2718 days
7.2
TCGA-CJ-4875-01A
0 years, male, white, stage:Stage IV, dead, 3554 days
7.2
TCGA-BP-5010-01A
0 years, male, white, stage:Stage III, dead, 878 days
7.2
TCGA-B0-5400-01A
0 years, female, white, stage:Stage III, alive, 1733 days
7.1
TCGA-BP-4994-01A
0 years, male, white, stage:Stage I, alive, 1308 days
7.1
TCGA-B0-5121-01A
0 years, male, white, stage:Stage I, alive, 1485 days
7.1
TCGA-MM-A84U-01A
0 years, female, black or african american, stage:Stage I, alive, 700 days
7.1
TCGA-B0-5099-01A
0 years, female, white, stage:Stage III, dead, 485 days
7.1
TCGA-B0-4713-01A
0 years, female, white, stage:Stage III, dead, 202 days
7.0
TCGA-AK-3458-01A
0 years, male, white, stage:Stage I, alive, 1168 days
7.0
TCGA-BP-4335-01A
0 years, female, white, stage:Stage IV, dead, 475 days
6.9
TCGA-AK-3454-01A
0 years, male, white, stage:Stage I, alive, 874 days
6.9
TCGA-G6-A8L7-01A
0 years, female, black or african american, stage:Stage I, alive, 2133 days
6.9
TCGA-BP-4960-01A
0 years, male, white, stage:Stage II, alive, 2172 days
6.9
TCGA-BP-4776-01A
0 years, male, white, stage:Stage I, alive, 411 days
6.9
TCGA-G6-A5PC-01A
0 years, female, black or african american, stage:Stage IV, dead, 242 days
6.8
TCGA-AK-3436-01A
0 years, male, white, stage:Stage IV, alive, 3331 days
6.8
TCGA-BP-5009-01A
0 years, male, white, stage:Stage I, dead, 1092 days
6.8
TCGA-CJ-4912-01A
0 years, male, white, stage:Stage II, alive, 1657 days
6.7
TCGA-AK-3425-01A
0 years, male, white, stage:Stage I, alive, 3343 days
6.7
TCGA-AK-3451-01A
0 years, male, white, stage:Stage II, alive, 2868 days
6.6
TCGA-B0-4813-01A
0 years, male, white, stage:Stage III, dead, 18 days
6.6
TCGA-CJ-4870-01A
0 years, female, black or african american, stage:Stage III, alive, 1498 days
6.6
TCGA-AK-3443-01A
0 years, male, white, stage:Stage II, alive, 1423 days
6.6
TCGA-B0-4817-01A
0 years, male, white, stage:Stage III, dead, 1019 days
6.6
TCGA-CJ-4891-01A
0 years, female, white, stage:Stage III, dead, 819 days
6.5
TCGA-B0-5706-01A
0 years, male, white, stage:Stage II, alive, 3205 days
6.4
TCGA-BP-4969-01A
0 years, female, white, stage:Stage I, alive, 1794 days
6.3
TCGA-BP-4159-01A
0 years, male, white, stage:Stage I, dead, 2601 days
6.3
TCGA-B0-4707-01A
0 years, male, white, stage:Stage III, dead, 600 days
6.2
TCGA-BP-4761-01A
0 years, male, white, stage:Stage III, alive, 182 days
6.2
TCGA-BP-4971-01A
0 years, male, white, stage:Stage III, alive, 1487 days
6.1
TCGA-BP-4981-01A
0 years, female, white, stage:Stage III, dead, 1097 days
6.1
TCGA-CZ-5453-01A
0 years, male, white, stage:Stage II, dead, 2419 days
5.8
TCGA-B0-4811-01A
0 years, male, white, stage:Stage III, dead, 1417 days
5.7
TCGA-CJ-4900-01A
0 years, female, white, stage:Stage IV, dead, 1714 days
5.6
TCGA-A3-3328-01A
0 years, male, white, stage:Stage I, alive, 1385 days
5.6
TCGA-B0-5083-01A
0 years, male, white, stage:Stage I, dead, 1045 days
5.4
TCGA-BP-5191-01A
0 years, male, white, stage:Stage III, alive, 967 days
5.3
TCGA-CZ-5989-01A
0 years, male, white, stage:Stage II, alive, 1905 days
5.1
TCGA-BP-4799-01A
0 years, male, white, stage:Stage III, dead, 1133 days
5.0
TCGA-BP-5169-01A
0 years, male, white, stage:Stage I, alive, 193 days
4.9
TCGA-BP-5175-01A
0 years, male, white, stage:Stage I, alive, 932 days
4.8
TCGA-B0-5085-01A
0 years, female, white, stage:Stage III, dead, 770 days
4.7
TCGA-B8-A54I-01A
0 years, male, black or african american, stage:Stage I, alive, 150 days
4.7
TCGA-B4-5832-01A
0 years, male, white, stage:Stage III, alive, 155 days
4.6
TCGA-A3-3374-01A
0 years, female, black or african american, stage:Stage I, alive, 1314 days
4.5
TCGA-DV-A4VZ-01A
0 years, male, black or african american, stage:Stage I, alive, 365 days
4.5
TCGA-AK-3427-01A
0 years, male, white, stage:Stage I, alive, 3583 days
4.5
TCGA-B0-4821-01A
0 years, female, asian, stage:Stage III, dead, 1230 days
4.4
TCGA-B2-3923-01A
0 years, male, white, stage:Stage II, alive, 992 days
4.4
TCGA-B0-4697-01A
0 years, female, white, stage:Stage IV, dead, 578 days
4.3
TCGA-BP-5185-01A
0 years, male, white, stage:Stage I, alive, 1132 days
4.2
TCGA-AK-3433-01A
0 years, female, white, stage:Stage II, alive, 3409 days
4.0
TCGA-AK-3465-01A
0 years, female, black or african american, stage:Stage I, alive, 369 days
3.9
TCGA-AS-3777-01A
0 years, male, white, stage:Stage I, alive, 1238 days
3.9
TCGA-B0-4841-01A
0 years, male, white, stage:Stage IV, dead, 204 days
3.8
TCGA-AK-3440-01A
0 years, male, white, stage:Stage I, alive, 2865 days
3.6
TCGA-BP-4992-01A
0 years, male, white, stage:Stage I, alive, 501 days
2.9
TCGA-BP-4334-01A
0 years, male, white, stage:Stage III, dead, 645 days
2.6
TCGA-B0-5117-01A
0 years, male, white, stage:Stage I, alive, 1608 days
2.5
TCGA-AK-3447-01A
0 years, male, white, stage:Stage II, alive, 1217 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMARCAL1 is not prognostic in Kidney Renal Clear Cell Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.4
Number of samples
100
Samples
Sample
Description
TPM
ccRCC-41
0 years, male, NA, stage:pT3bN0M0, dead, 540 days
20.9
ccRCC-15
0 years, female, NA, stage:pT2N0M0, dead, 2070 days
19.9
ccRCC-19
0 years, female, NA, stage:pT2N0M0, alive, 2100 days
18.0
ccRCC-71
0 years, male, NA, stage:pT1bN0M0, alive, 2160 days
18.0
ccRCC-30
0 years, male, NA, stage:pT2N0M0, dead, 420 days
17.6
ccRCC-87
0 years, male, NA, stage:pT1bN0M0, alive, 2370 days
16.8
ccRCC-58
0 years, male, NA, stage:pT1aN0M0, alive, 1110 days
16.6
ccRCC-77
0 years, male, NA, stage:pT1bN0M0, alive, 1860 days
16.2
ccRCC-16
0 years, male, NA, stage:pT2N0M0, alive, 2190 days
16.0
ccRCC-68
0 years, male, NA, stage:pT1bN0M0, alive, 2640 days
16.0
ccRCC-67
0 years, male, NA, stage:pT1aN0M0, dead, 1260 days
15.9
ccRCC-95
0 years, male, NA, stage:pT1bN0M0, alive, 3960 days
15.7
ccRCC-17
0 years, female, NA, stage:pT1bN0M0, alive, 2220 days
15.6
ccRCC-46
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
15.5
ccRCC-96
0 years, male, NA, stage:pT1aN0M0, alive, 3930 days
15.3
ccRCC-65
0 years, male, NA, stage:pT3bN0M1, dead, 300 days
15.0
ccRCC-80
0 years, male, NA, stage:pT2N0M0, alive, 3000 days
15.0
ccRCC-44
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
14.9
ccRCC-6
0 years, male, NA, stage:pT1bN0M0, alive, 2820 days
14.8
ccRCC-89
0 years, male, NA, stage:pT1aN0M0, alive, 3510 days
14.8
ccRCC-29
0 years, female, NA, stage:pT1aN0M0, alive, 1710 days
14.7
ccRCC-73
0 years, male, NA, stage:pT1aN0M0, alive, 2640 days
14.7
ccRCC-20
0 years, female, NA, stage:pT3aN0M1, alive, 930 days
14.5
ccRCC-70
0 years, male, NA, stage:pT4N0M1, dead, 540 days
14.4
ccRCC-100
0 years, male, NA, stage:pT1aN0M0, alive, 4260 days
14.3
ccRCC-79
0 years, male, NA, stage:pT1bN0M0, alive, 2670 days
14.2
ccRCC-5
0 years, male, NA, stage:pT1aN0M0, alive, 2940 days
14.1
ccRCC-92
0 years, male, NA, stage:pT1aN0M0, alive, 3660 days
14.1
ccRCC-27
0 years, male, NA, stage:pT1aN0M0, alive, 1590 days
14.1
ccRCC-84
0 years, male, NA, stage:pT1bN0M0, alive, 2010 days
14.0
ccRCC-86
0 years, female, NA, stage:pT1bN0M0, alive, 3390 days
14.0
ccRCC-18
0 years, female, NA, stage:pT1aN0M0, alive, 2130 days
13.9
ccRCC-54
0 years, male, NA, stage:pT1bN0M0, alive, 1200 days
13.9
ccRCC-23
0 years, male, NA, stage:pT1bN0M0, alive, 1170 days
13.9
ccRCC-13
0 years, female, NA, stage:pT3aN2M0, dead, 540 days
13.8
ccRCC-66
0 years, female, NA, stage:pT3bN0M1, alive, 2520 days
13.7
ccRCC-91
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
13.6
ccRCC-97
0 years, male, NA, stage:pT1aN2M1, dead, 990 days
13.5
ccRCC-1
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
13.4
ccRCC-11
0 years, male, NA, stage:pT1aN0M0, alive, 2370 days
13.2
ccRCC-59
0 years, male, NA, stage:pT1bN0M0, alive, 930 days
13.2
ccRCC-85
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
13.1
ccRCC-52
0 years, female, NA, stage:pT3bN0M1, alive, 1350 days
13.1
ccRCC-90
0 years, male, NA, stage:pT1aN0M0, dead, 1170 days
13.1
ccRCC-21
0 years, male, NA, stage:pT1bN0M0, alive, 1080 days
13.1
ccRCC-34
0 years, male, NA, stage:pT3bN0M1, alive, 1530 days
13.1
ccRCC-31
0 years, male, NA, stage:pT1aN0M0, alive, 1560 days
13.1
ccRCC-105
0 years, male, NA, stage:pT1aN0M0, alive, 2190 days
13.0
ccRCC-7
0 years, female, NA, stage:pT2N0M0, alive, 330 days
13.0
ccRCC-104
0 years, female, NA, stage:pT1aN0M0, alive, 3480 days
12.9
ccRCC-24
0 years, male, NA, stage:pT3bN0M0, dead, 750 days
12.9
ccRCC-98
0 years, male, NA, stage:pT1aN0M0, alive, 30 days
12.9
ccRCC-62
0 years, male, NA, stage:pT1bN0M0, alive, 1620 days
12.4
ccRCC-48
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
12.4
ccRCC-82
0 years, male, NA, stage:pT1aN0M0, alive, 3090 days
12.3
ccRCC-35
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
12.3
ccRCC-61
0 years, male, NA, stage:pT1aN0M0, alive, 1470 days
12.2
ccRCC-60
0 years, female, NA, stage:pT1aN0M0, alive, 1470 days
12.1
ccRCC-3
0 years, male, NA, stage:pT3bN1M0, dead, 240 days
12.1
ccRCC-103
0 years, female, NA, stage:pT1aN0M0, alive, 4350 days
12.0
ccRCC-10
0 years, male, NA, stage:pT3aN2M1, dead, 90 days
12.0
ccRCC-93
0 years, male, NA, stage:pT1bN0M0, alive, 3660 days
12.0
ccRCC-106
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
11.9
ccRCC-81
0 years, male, NA, stage:pT3aN2M0, dead, 1290 days
11.8
ccRCC-42
0 years, male, NA, stage:pT3aN0M0, alive, 1170 days
11.7
ccRCC-75
0 years, male, NA, stage:pT3aN1M1, dead, 180 days
11.7
ccRCC-99
0 years, female, NA, stage:pT2N0M0, alive, 3330 days
11.6
ccRCC-22
0 years, male, NA, stage:pT3bN0M0, dead, 330 days
11.6
ccRCC-51
0 years, male, NA, stage:pT3aN0M0, alive, 1410 days
11.6
ccRCC-72
0 years, male, NA, stage:pT1bN0M0, alive, 2760 days
11.5
ccRCC-28
0 years, male, NA, stage:pT1bN0M0, alive, 1530 days
11.3
ccRCC-56
0 years, male, NA, stage:pT1aN0M0, alive, 1950 days
11.3
ccRCC-50
0 years, male, NA, stage:pT3bN0M0, alive, 900 days
11.1
ccRCC-76
0 years, female, NA, stage:pT3aN0M1, dead, 960 days
11.0
ccRCC-25
0 years, male, NA, stage:pT1aN0M0, alive, 1350 days
10.7
ccRCC-8
0 years, male, NA, stage:pT1bN0M0, alive, 2400 days
10.6
ccRCC-14
0 years, male, NA, stage:pT3cN0M0, alive, 2280 days
10.6
ccRCC-78
0 years, female, NA, stage:pT1aN0M0, alive, 2610 days
10.4
ccRCC-69
0 years, male, NA, stage:pT1aN0M0, alive, 2670 days
10.2
ccRCC-39
0 years, male, NA, stage:pT2N0M0, alive, 900 days
10.1
ccRCC-26
0 years, male, NA, stage:pT1bN0M0, alive, 1800 days
9.9
ccRCC-88
0 years, male, NA, stage:pT1aN0M0, alive, 2880 days
9.8
ccRCC-4
0 years, male, NA, stage:pT1bN0M0, dead, 270 days
9.7
ccRCC-32
0 years, male, NA, stage:pT2N0M0, dead, 1320 days
9.7
ccRCC-45
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
9.6
ccRCC-64
0 years, male, NA, stage:pT3aN0M0, alive, 2430 days
9.0
ccRCC-83
0 years, male, NA, stage:pT1aN0M0, alive, 300 days
8.9
ccRCC-53
0 years, male, NA, stage:pT1aN0M0, alive, 1260 days
8.8
ccRCC-12
0 years, male, NA, stage:pT1aN0M0, alive, 900 days
8.7
ccRCC-40
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
8.5
ccRCC-49
0 years, male, NA, stage:pT3bN0M0, alive, 1290 days
8.3
ccRCC-94
0 years, male, NA, stage:pT1bN0M0, dead, 480 days
8.0
ccRCC-2
0 years, male, NA, stage:pT1aN0M1, dead, 2190 days
7.6
ccRCC-43
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
7.6
ccRCC-102
0 years, male, NA, stage:pT1bN0M0, alive, 4260 days
7.4
ccRCC-9
0 years, male, NA, stage:pT2N1M1, dead, 360 days
7.3
ccRCC-38
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
6.8
ccRCC-36
0 years, male, NA, stage:pT2N0M0, alive, 1410 days
6.7
ccRCC-55
0 years, female, NA, stage:pT3bN0M0, alive, 1260 days
6.3
ccRCC-37
0 years, female, NA, stage:pT1aN0M0, alive, 1500 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMARCAL1 is not prognostic in Kidney Renal Papillary Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.5
Number of samples
282
Samples
Sample
Description
TPM
TCGA-AL-3471-01A
0 years, male, white, stage:Stage I, dead, 1500 days
41.8
TCGA-B3-4103-01A
0 years, male, white, stage:Stage I, alive, 930 days
39.8
TCGA-BQ-7045-01A
0 years, male, black or african american, stage:Stage I, dead, 1468 days
31.2
TCGA-DZ-6133-01A
0 years, female, white, stage:Stage I, dead, 1557 days
27.9
TCGA-G7-7501-01A
0 years, female, black or african american, stage:Stage III, dead, 624 days
26.8
TCGA-B3-A6W5-01A
0 years, male, black or african american, stage:Stage I, alive, 309 days
25.4
TCGA-BQ-5876-01A
0 years, male, white, stage:Stage I, alive, 586 days
22.7
TCGA-5P-A9JU-01A
0 years, male, white, stage:Stage III, alive, 373 days
22.5
TCGA-A4-8515-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 709 days
22.3
TCGA-BQ-7055-01A
0 years, male, white, stage:Stage I, alive, 799 days
22.2
TCGA-2Z-A9JI-01A
0 years, male, white, stage:Stage III, alive, 1567 days
21.9
TCGA-G7-A8LC-01A
0 years, male, white, stage:Stage I, alive, 702 days
21.6
TCGA-J7-8537-01A
0 years, female, asian, stage:Stage III, dead, 321 days
21.4
TCGA-AL-7173-01A
0 years, female, white, stage:Stage IV, alive, 2060 days
21.3
TCGA-5P-A9K8-01A
0 years, female, white, stage:'--, alive, 1309 days
21.1
TCGA-GL-7966-01A
0 years, female, white, stage:Stage III, alive, 112 days
21.1
TCGA-J7-6720-01A
0 years, male, asian, stage:Stage I, alive, 388 days
20.7
TCGA-BQ-5879-01A
0 years, female, white, stage:Stage III, dead, 697 days
20.4
TCGA-A4-8098-01A
0 years, male, black or african american, stage:Stage I, alive, 896 days
20.3
TCGA-A4-A5Y1-01A
0 years, male, white, stage:Stage III, dead, 395 days
20.1
TCGA-KV-A74V-01A
0 years, male, white, stage:Stage I, alive, 347 days
19.9
TCGA-B9-5155-01A
0 years, male, white, stage:Stage III, alive, 665 days
19.8
TCGA-BQ-5877-01A
0 years, male, black or african american, stage:Stage IV, dead, 270 days
19.2
TCGA-G7-6796-01A
0 years, male, white, stage:Stage I, alive, 2173 days
18.9
TCGA-F9-A8NY-01A
0 years, female, asian, stage:Stage IV, alive, 36 days
18.4
TCGA-SX-A71V-01A
0 years, male, white, stage:Stage I, alive, 876 days
18.3
TCGA-BQ-5883-01A
0 years, female, black or african american, stage:Stage I, alive, 1242 days
18.2
TCGA-BQ-5884-01A
0 years, female, black or african american, stage:Stage I, alive, 792 days
18.2
TCGA-EV-5902-01A
0 years, male, white, stage:Stage I, alive, 578 days
18.2
TCGA-UN-AAZ9-01A
0 years, female, black or african american, stage:Stage I, alive, 548 days
18.2
TCGA-B3-3926-01A
0 years, female, white, stage:Stage I, alive, 883 days
18.0
TCGA-G7-A8LD-01A
0 years, male, white, stage:Stage III, dead, 514 days
17.8
TCGA-B9-A5W7-01A
0 years, male, black or african american, stage:Stage I, alive, 585 days
17.7
TCGA-GL-8500-01A
0 years, male, white, stage:Stage I, alive, 841 days
17.7
TCGA-B9-A5W8-01A
0 years, male, black or african american, stage:Stage II, alive, 524 days
17.6
TCGA-IA-A40Y-01A
0 years, female, white, stage:Stage III, alive, 62 days
17.4
TCGA-MH-A855-01A
0 years, female, black or african american, stage:Stage II, alive, 369 days
17.4
TCGA-DZ-6134-01A
0 years, male, white, stage:Stage I, alive, 1856 days
17.0
TCGA-2Z-A9JS-01A
0 years, male, white, stage:Stage I, dead, 492 days
16.9
TCGA-UZ-A9PQ-01A
0 years, male, black or african american, stage:Stage III, dead, 2624 days
16.9
TCGA-GL-6846-01A
0 years, male, white, stage:Stage IV, alive, 5925 days
16.6
TCGA-PJ-A5Z9-01A
0 years, female, white, stage:Stage I, alive, 540 days
16.3
TCGA-BQ-5878-01A
0 years, female, white, stage:Stage III, alive, 1938 days
16.3
TCGA-AL-3466-01A
0 years, male, white, stage:Stage IV, dead, 293 days
16.2
TCGA-B3-3925-01A
0 years, male, white, stage:Stage III, alive, 1029 days
16.2
TCGA-BQ-5894-01A
0 years, male, stage:Stage IV, alive, 84 days
15.8
TCGA-A4-7734-01A
0 years, female, white, stage:Stage I, alive, 27 days
15.6
TCGA-UZ-A9PN-01A
0 years, male, white, stage:Stage III, dead, 1136 days
15.5
TCGA-F9-A4JJ-01A
0 years, female, black or african american, stage:Stage III, dead, 325 days
15.5
TCGA-B1-A657-01A
0 years, male, white, stage:Stage I, alive, 641 days
15.2
TCGA-2Z-A9JG-01A
0 years, male, white, stage:Stage I, alive, 1662 days
15.1
TCGA-UZ-A9PP-01A
0 years, male, white, stage:Stage I, alive, 3010 days
14.8
TCGA-DZ-6132-01A
0 years, male, stage:Stage I, alive, 2460 days
14.8
TCGA-BQ-5882-01A
0 years, male, stage:Stage III, dead, 658 days
14.7
TCGA-AL-3473-01A
0 years, male, white, stage:Stage II, alive, 1906 days
14.6
TCGA-BQ-5890-01A
0 years, male, white, stage:Stage III, alive, 233 days
14.6
TCGA-G7-6793-01A
0 years, female, white, stage:Stage IV, dead, 336 days
14.6
TCGA-A4-7997-01A
0 years, male, white, stage:Stage I, alive, 927 days
14.5
TCGA-A4-7288-01A
0 years, female, white, stage:'--, alive, 1857 days
14.3
TCGA-2Z-A9JK-01A
0 years, male, white, stage:Stage III, alive, 1186 days
14.3
TCGA-EV-5901-01A
0 years, female, white, stage:Stage I, alive, 1040 days
14.3
TCGA-B1-7332-01A
0 years, female, black or african american, stage:Stage II, alive, 1141 days
14.2
TCGA-Y8-A896-01A
0 years, male, white, stage:Stage III, alive, 567 days
14.2
TCGA-G7-6797-01A
0 years, male, white, stage:Stage III, alive, 765 days
14.1
TCGA-G7-6789-01A
0 years, female, white, stage:Stage IV, dead, 122 days
14.1
TCGA-A4-A4ZT-01A
0 years, female, white, stage:Stage I, alive, 516 days
13.9
TCGA-GL-A9DC-01A
0 years, female, white, stage:Stage I, alive, 392 days
13.8
TCGA-GL-A59T-01A
0 years, male, white, stage:Stage I, alive, 546 days
13.8
TCGA-A4-7287-01A
0 years, female, white, stage:Stage I, dead, 597 days
13.8
TCGA-A4-7584-01A
0 years, male, black or african american, stage:Stage I, alive, 650 days
13.6
TCGA-HE-7129-01A
male, stage:Stage II, alive, 2492 days
13.6
TCGA-5P-A9K6-01A
0 years, male, white, stage:'--, alive, 1914 days
13.5
TCGA-B9-4117-01A
0 years, female, black or african american, stage:'--, alive, 14 days
13.4
TCGA-V9-A7HT-01A
0 years, male, black or african american, stage:Stage II, alive, 965 days
13.4
TCGA-5P-A9JV-01A
0 years, male, white, stage:'--, alive, 2043 days
13.4
TCGA-BQ-7046-01A
0 years, male, white, stage:Stage I, alive, 2948 days
13.4
TCGA-5P-A9K9-01A
0 years, female, white, stage:'--, dead, 589 days
13.4
TCGA-DZ-6131-01A
0 years, male, white, stage:Stage III, alive, 2429 days
13.4
TCGA-SX-A71S-01A
0 years, female, white, stage:Stage I, alive, 1504 days
13.3
TCGA-B9-4116-01A
0 years, female, black or african american, stage:'--, alive, 627 days
13.3
TCGA-A4-7828-01A
0 years, female, black or african american, stage:Stage I, alive, 238 days
13.2
TCGA-A4-7915-01A
0 years, female, black or african american, stage:Stage II, alive, 7 days
13.2
TCGA-A4-A5XZ-01A
0 years, female, white, stage:Stage II, alive, 479 days
13.2
TCGA-BQ-5875-01A
0 years, female, white, stage:Stage III, alive, 2639 days
13.2
TCGA-B3-8121-01A
0 years, female, black or african american, stage:Stage I, alive, 379 days
13.1
TCGA-2Z-A9JR-01A
0 years, male, white, stage:Stage I, alive, 161 days
13.1
TCGA-BQ-5893-01A
0 years, male, white, stage:Stage IV, dead, 241 days
13.0
TCGA-MH-A55W-01A
0 years, male, black or african american, stage:Stage I, alive, 1043 days
12.9
TCGA-UZ-A9PK-01A
0 years, male, white, stage:Stage I, alive, 3571 days
12.9
TCGA-BQ-5892-01A
0 years, male, white, stage:Stage I, alive, 364 days
12.9
TCGA-P4-A5E7-01A
0 years, female, white, stage:Stage I, alive, 2649 days
12.8
TCGA-A4-7583-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
12.8
TCGA-BQ-7051-01A
0 years, male, white, stage:Stage II, alive, 1533 days
12.7
TCGA-Y8-A894-01A
0 years, female, white, stage:Stage I, alive, 567 days
12.6
TCGA-Y8-A8S0-01A
0 years, male, white, stage:Stage I, alive, 183 days
12.6
TCGA-UZ-A9PS-01A
0 years, female, black or african american, stage:Stage II, alive, 2167 days
12.5
TCGA-2Z-A9J9-01A
0 years, male, black or african american, stage:Stage I, alive, 2294 days
12.4
TCGA-IA-A40U-01A
0 years, male, white, stage:Stage III, alive, 511 days
12.4
TCGA-5P-A9KC-01A
0 years, female, white, stage:'--, alive, 377 days
12.4
TCGA-G7-6792-01A
0 years, male, black or african american, stage:Stage I, alive, 2765 days
12.3
TCGA-UZ-A9PM-01A
0 years, male, white, stage:Stage II, alive, 3811 days
12.2
TCGA-AT-A5NU-01A
0 years, male, white, stage:Stage I, alive, 67 days
12.2
TCGA-P4-A5E8-01A
0 years, male, white, stage:Stage III, dead, 1306 days
12.2
TCGA-F9-A7Q0-01A
0 years, female, asian, stage:Stage I, alive, 398 days
12.1
TCGA-P4-AAVL-01A
0 years, male, white, stage:Stage III, dead, 487 days
12.0
TCGA-HE-7130-01A
female, stage:Stage III, alive, 1770 days
12.0
TCGA-BQ-7050-01A
0 years, female, white, stage:Stage I, alive, 1864 days
12.0
TCGA-HE-A5NH-01A
0 years, male, stage:Stage I, alive, 791 days
11.9
TCGA-BQ-7061-01A
0 years, female, white, stage:Stage I, alive, 218 days
11.9
TCGA-DW-7842-01A
0 years, male, white, stage:Stage I, alive, 92 days
11.9
TCGA-B9-5156-01A
0 years, male, white, stage:'--, alive, 1338 days
11.8
TCGA-AL-A5DJ-01A
0 years, female, white, stage:Stage III, dead, 1498 days
11.8
TCGA-PJ-A5Z8-01A
0 years, female, white, stage:Stage I, alive, 600 days
11.7
TCGA-MH-A561-01A
0 years, male, white, stage:Stage I, alive, 841 days
11.7
TCGA-IZ-8196-01A
0 years, male, white, stage:Stage I, alive, 649 days
11.7
TCGA-A4-8310-01A
0 years, male, white, stage:Stage III, alive, 780 days
11.5
TCGA-AL-3467-01A
0 years, female, white, stage:'--, alive, 2135 days
11.5
TCGA-SX-A71U-01A
0 years, male, white, stage:Stage I, alive, 1357 days
11.5
TCGA-B9-A5W9-01A
0 years, male, white, stage:Stage I, alive, 5 days
11.5
TCGA-EV-5903-01A
0 years, male, white, stage:Stage I, alive, 757 days
11.4
TCGA-SX-A7SS-01A
0 years, male, white, stage:Stage I, alive, 1615 days
11.4
TCGA-HE-A5NF-01A
0 years, male, stage:Stage I, alive, 2582 days
11.4
TCGA-SX-A7SQ-01A
0 years, male, white, stage:Stage I, alive, 1266 days
11.3
TCGA-MH-A857-01A
0 years, male, black or african american, stage:Stage I, alive, 890 days
11.2
TCGA-BQ-5885-01A
0 years, male, white, stage:Stage III, alive, 921 days
11.2
TCGA-UZ-A9PV-01A
0 years, male, white, stage:Stage I, alive, 1444 days
11.1
TCGA-P4-A5EB-01A
0 years, male, white, stage:Stage I, alive, 2477 days
11.1
TCGA-Y8-A8RZ-01A
0 years, male, white, stage:Stage I, alive, 205 days
11.0
TCGA-G7-A8LE-01A
0 years, male, white, stage:Stage I, alive, 2453 days
11.0
TCGA-BQ-7062-01A
0 years, male, black or african american, stage:Stage I, alive, 116 days
11.0
TCGA-O9-A75Z-01A
0 years, male, white, stage:Stage I, alive, 471 days
10.9
TCGA-F9-A97G-01A
0 years, male, asian, stage:Stage III, alive, 13 days
10.8
TCGA-A4-8630-01A
0 years, female, white, stage:Stage I, alive, 436 days
10.7
TCGA-MH-A854-01A
0 years, female, black or african american, stage:Stage I, alive, 536 days
10.7
TCGA-SX-A7SL-01A
0 years, male, stage:Stage I, alive, 823 days
10.7
TCGA-2Z-A9JQ-01A
0 years, male, white, stage:Stage I, alive, 778 days
10.6
TCGA-BQ-5891-01A
0 years, female, white, stage:Stage III, alive, 29 days
10.6
TCGA-2Z-A9JJ-01A
0 years, female, white, stage:Stage I, alive, 1213 days
10.6
TCGA-UZ-A9PU-01A
0 years, male, white, stage:Stage I, dead, 933 days
10.6
TCGA-UZ-A9PR-01A
0 years, male, white, stage:Stage I, alive, 2191 days
10.6
TCGA-DZ-6135-01A
0 years, male, stage:Stage I, alive, 2269 days
10.5
TCGA-A4-A5DU-01A
0 years, female, white, stage:Stage I, alive, 496 days
10.5
TCGA-DW-7839-01A
0 years, female, white, stage:Stage I, alive, 419 days
10.5
TCGA-UZ-A9PJ-01A
0 years, male, white, stage:Stage I, dead, 797 days
10.4
TCGA-P4-AAVK-01A
0 years, male, white, stage:Stage III, alive, 1590 days
10.3
TCGA-B3-4104-01A
0 years, male, white, stage:Stage II, alive, 1049 days
10.3
TCGA-KV-A6GD-01A
0 years, male, white, stage:Stage I, alive, 560 days
10.3
TCGA-GL-A59R-01A
0 years, male, white, stage:Stage III, alive, 378 days
10.3
TCGA-5P-A9K4-01A
0 years, male, white, stage:'--, alive, 2184 days
10.3
TCGA-B9-4113-01A
0 years, male, black or african american, stage:Stage I, dead, 1536 days
10.3
TCGA-DW-5561-01A
0 years, male, black or african american, stage:Stage I, alive, 414 days
10.3
TCGA-GL-7773-01A
0 years, male, white, stage:Stage I, alive, 393 days
10.2
TCGA-GL-A9DE-01A
0 years, male, black or african american, stage:Stage I, alive, 496 days
10.2
TCGA-2Z-A9J8-01A
0 years, male, white, stage:Stage I, alive, 2790 days
10.2
TCGA-A4-8516-01A
0 years, male, white, stage:Stage III, alive, 23 days
10.1
TCGA-BQ-7053-01A
0 years, female, black or african american, stage:Stage III, alive, 1516 days
10.1
TCGA-BQ-7059-01A
0 years, male, white, stage:Stage I, alive, 232 days
10.0
TCGA-Y8-A898-01A
0 years, male, white, stage:Stage I, alive, 475 days
10.0
TCGA-2Z-A9JE-01A
0 years, male, white, stage:Stage I, alive, 1728 days
10.0
TCGA-Y8-A897-01A
0 years, female, white, stage:Stage I, alive, 549 days
9.9
TCGA-HE-A5NK-01A
0 years, male, stage:'--, alive, 2228 days
9.9
TCGA-KV-A6GE-01A
0 years, male, white, stage:Stage I, alive, 885 days
9.9
TCGA-5P-A9KF-01A
0 years, male, white, stage:'--, alive, 845 days
9.8
TCGA-5P-A9KE-01A
0 years, male, white, stage:'--, alive, 824 days
9.8
TCGA-4A-A93W-01A
0 years, female, white, stage:Stage I, alive, 4 days
9.8
TCGA-BQ-5888-01A
0 years, female, white, stage:Stage I, alive, 403 days
9.8
TCGA-A4-7286-01A
0 years, male, white, stage:'--, alive, 554 days
9.8
TCGA-B9-A8YH-01A
0 years, male, black or african american, stage:Stage I, alive, 532 days
9.8
TCGA-SX-A71W-01A
0 years, male, white, stage:Stage I, alive, 1076 days
9.7
TCGA-5P-A9KA-01A
0 years, male, white, stage:'--, alive, 395 days
9.6
TCGA-2Z-A9JM-01A
0 years, male, white, stage:Stage I, alive, 934 days
9.6
TCGA-2Z-A9J5-01A
0 years, male, white, stage:Stage II, alive, 3050 days
9.6
TCGA-IZ-A6M8-01A
0 years, male, black or african american, stage:Stage I, alive, 497 days
9.5
TCGA-F9-A7VF-01A
0 years, female, white, stage:Stage I, alive, 73 days
9.4
TCGA-SX-A7SR-01A
0 years, male, white, stage:Stage II, alive, 805 days
9.4
TCGA-IA-A40X-01A
0 years, female, black or african american, stage:Stage I, alive, 608 days
9.4
TCGA-B1-A654-01A
0 years, female, black or african american, stage:Stage I, alive, 616 days
9.4
TCGA-BQ-7060-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 214 days
9.4
TCGA-BQ-7044-01A
0 years, male, white, stage:Stage III, alive, 3760 days
9.3
TCGA-AL-3468-01A
0 years, male, white, stage:Stage II, dead, 2331 days
9.3
TCGA-2K-A9WE-01A
0 years, male, white, stage:Stage II, alive, 214 days
9.3
TCGA-B1-A47M-01A
0 years, male, black or african american, stage:Stage III, alive, 659 days
9.3
TCGA-5P-A9JZ-01A
0 years, female, white, stage:'--, alive, 2744 days
9.3
TCGA-IA-A83V-01A
0 years, male, white, stage:Stage I, dead, 2941 days
9.3
TCGA-DW-7836-01A
0 years, male, white, stage:Stage I, alive, 1093 days
9.1
TCGA-B1-5398-01A
0 years, male, white, stage:Stage III, alive, 1251 days
9.1
TCGA-SX-A7SN-01A
0 years, male, white, stage:Stage I, alive, 578 days
9.0
TCGA-SX-A7SM-01A
0 years, male, black or african american, stage:Stage IV, dead, 363 days
9.0
TCGA-2Z-A9J1-01A
0 years, male, white, stage:Stage I, alive, 2298 days
8.9
TCGA-Y8-A895-01A
0 years, male, white, stage:Stage I, alive, 484 days
8.9
TCGA-BQ-5881-01A
0 years, male, white, stage:Stage I, alive, 1454 days
8.9
TCGA-A4-A48D-01A
0 years, male, black or african american, stage:Stage I, alive, 379 days
8.9
TCGA-B9-4115-01A
0 years, male, black or african american, stage:Stage I, alive, 803 days
8.8
TCGA-IA-A83W-01A
0 years, male, white, stage:Stage I, dead, 2043 days
8.8
TCGA-HE-A5NJ-01A
0 years, male, stage:'--, alive, 1726 days
8.8
TCGA-BQ-7056-01A
0 years, female, white, stage:Stage III, alive, 612 days
8.7
TCGA-A4-8312-01A
0 years, male, black or african american, stage:Stage I, alive, 708 days
8.7
TCGA-SX-A7SP-01A
0 years, female, white, stage:Stage I, dead, 496 days
8.7
TCGA-2Z-A9J6-01A
0 years, male, white, stage:Stage I, alive, 1731 days
8.7
TCGA-IA-A83T-01A
0 years, male, white, stage:'--, dead, 2684 days
8.6
TCGA-2Z-A9JD-01A
0 years, male, white, stage:Stage I, alive, 1060 days
8.6
TCGA-2Z-A9J7-01A
0 years, male, white, stage:Stage IV, dead, 139 days
8.5
TCGA-GL-A4EM-01A
0 years, male, white, stage:Stage I, alive, 32 days
8.5
TCGA-5P-A9K2-01A
0 years, male, white, stage:'--, alive, 2392 days
8.5
TCGA-BQ-7049-01A
0 years, female, white, stage:Stage I, dead, 1364 days
8.5
TCGA-UZ-A9PO-01A
0 years, male, white, stage:Stage I, alive, 1911 days
8.5
TCGA-IZ-A6M9-01A
0 years, male, white, stage:Stage I, alive, 376 days
8.4
TCGA-A4-8517-01A
0 years, male, white, stage:Stage I, alive, 597 days
8.4
TCGA-SX-A7SO-01A
0 years, male, white, stage:Stage I, alive, 1257 days
8.3
TCGA-2Z-A9J3-01A
0 years, male, white, stage:Stage II, dead, 1771 days
8.3
TCGA-UZ-A9PX-01A
0 years, male, white, stage:Stage I, alive, 1981 days
8.2
TCGA-DW-7841-01A
0 years, male, black or african american, stage:Stage I, alive, 445 days
8.1
TCGA-Y8-A8RY-01A
0 years, male, white, stage:Stage I, alive, 769 days
8.1
TCGA-Y8-A8S1-01A
0 years, male, white, stage:Stage I, alive, 404 days
8.1
TCGA-5P-A9JW-01A
0 years, male, white, stage:'--, alive, 3241 days
8.1
TCGA-P4-AAVO-01A
0 years, male, white, stage:Stage I, alive, 2400 days
8.0
TCGA-B9-4114-01A
0 years, male, black or african american, stage:'--, alive, 857 days
8.0
TCGA-P4-AAVM-01A
0 years, male, white, stage:Stage I, alive, 1539 days
8.0
TCGA-DW-7837-01A
0 years, male, black or african american, stage:Stage I, alive, 1142 days
8.0
TCGA-P4-A5EA-01A
0 years, female, white, stage:Stage III, dead, 201 days
8.0
TCGA-5P-A9K0-01A
0 years, male, white, stage:'--, alive, 677 days
8.0
TCGA-MH-A560-01A
0 years, male, white, stage:Stage I, alive, 924 days
8.0
TCGA-UZ-A9PZ-01A
0 years, male, white, stage:Stage III, alive, 657 days
7.9
TCGA-BQ-7048-01A
0 years, male, white, stage:Stage III, alive, 2839 days
7.8
TCGA-4A-A93X-01A
0 years, male, white, stage:Stage IV, alive, 390 days
7.8
TCGA-A4-7732-01A
0 years, male, black or african american, stage:'--, alive, 582 days
7.8
TCGA-MH-A856-01A
0 years, male, white, stage:Stage I, alive, 947 days
7.7
TCGA-MH-A562-01A
0 years, male, black or african american, stage:Stage I, alive, 616 days
7.7
TCGA-5P-A9JY-01A
0 years, male, white, stage:'--, dead, 1508 days
7.7
TCGA-4A-A93Y-01A
0 years, female, black or african american, stage:Stage II, alive, 352 days
7.6
TCGA-DW-7838-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.6
TCGA-GL-A9DD-01A
0 years, male, white, stage:Stage I, alive, 341 days
7.5
TCGA-2Z-A9JL-01A
0 years, male, black or african american, stage:Stage I, alive, 1006 days
7.5
TCGA-BQ-5889-01A
0 years, male, white, stage:Stage IV, dead, 329 days
7.4
TCGA-UZ-A9PL-01A
0 years, male, white, stage:Stage II, alive, 3152 days
7.4
TCGA-BQ-5887-01A
0 years, male, white, stage:Stage III, alive, 771 days
7.3
TCGA-WN-A9G9-01A
0 years, male, white, stage:Stage I, alive, 791 days
7.3
TCGA-5P-A9K3-01A
0 years, male, white, stage:'--, dead, 471 days
7.2
TCGA-G7-A8LB-01A
0 years, male, white, stage:Stage IV, alive, 547 days
7.1
TCGA-IZ-8195-01A
0 years, male, white, stage:Stage II, alive, 677 days
7.0
TCGA-P4-A5E6-01A
0 years, male, black or african american, stage:Stage III, alive, 3035 days
7.0
TCGA-B1-A656-01A
0 years, male, white, stage:Stage I, alive, 618 days
6.9
TCGA-UZ-A9Q1-01A
0 years, female, white, stage:Stage I, alive, 730 days
6.9
TCGA-B1-A47O-01A
0 years, female, white, stage:Stage I, alive, 842 days
6.8
TCGA-2Z-A9JN-01A
0 years, female, black or african american, stage:Stage I, alive, 740 days
6.8
TCGA-2Z-A9JO-01A
0 years, female, black or african american, stage:Stage I, alive, 949 days
6.8
TCGA-MH-A55Z-01A
0 years, male, black or african american, stage:Stage I, alive, 845 days
6.7
TCGA-UZ-A9Q0-01A
0 years, male, white, stage:Stage I, alive, 3368 days
6.7
TCGA-DW-7840-01A
0 years, male, black or african american, stage:Stage I, alive, 114 days
6.7
TCGA-A4-8518-01A
0 years, male, white, stage:Stage I, alive, 600 days
6.7
TCGA-2Z-A9JP-01A
0 years, male, white, stage:Stage I, alive, 893 days
6.7
TCGA-SX-A7SU-01A
0 years, male, stage:Stage I, alive, 1331 days
6.6
TCGA-A4-8311-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.6
TCGA-IA-A83S-01A
0 years, male, white, stage:'--, dead, 2609 days
6.5
TCGA-HE-A5NL-01A
0 years, male, stage:Stage I, alive, 767 days
6.4
TCGA-B9-A44B-01A
0 years, male, black or african american, stage:Stage III, alive, 361 days
6.2
TCGA-AL-3472-01A
0 years, male, black or african american, stage:'--, alive, 2029 days
6.1
TCGA-DW-5560-01A
0 years, female, white, stage:Stage I, alive, 1486 days
6.1
TCGA-P4-A5ED-01A
0 years, male, white, stage:Stage I, alive, 2816 days
6.1
TCGA-2Z-A9J2-01A
0 years, female, white, stage:Stage I, alive, 1795 days
6.0
TCGA-DW-7834-01A
0 years, male, white, stage:Stage I, alive, 3950 days
5.8
TCGA-B9-4617-01A
0 years, male, black or african american, stage:'--, alive, 35 days
5.8
TCGA-HE-A5NI-01A
0 years, male, stage:Stage I, alive, 360 days
5.7
TCGA-A4-A57E-01A
0 years, male, white, stage:Stage IV, dead, 258 days
5.7
TCGA-B9-A8YI-01A
0 years, male, black or african american, stage:Stage I, alive, 374 days
5.5
TCGA-Q2-A5QZ-01A
0 years, female, black or african american, stage:Stage III, alive, 428 days
5.2
TCGA-2Z-A9JT-01A
0 years, male, white, stage:Stage I, alive, 684 days
5.1
TCGA-B9-A69E-01A
0 years, male, white, stage:Stage III, alive, 452 days
5.0
TCGA-A4-7585-01A
0 years, male, white, stage:Stage III, dead, 1070 days
5.0
TCGA-J7-A8I2-01A
0 years, male, asian, stage:Stage I, alive, 307 days
5.0
TCGA-B1-A47N-01A
0 years, male, white, stage:Stage I, alive, 1110 days
5.0
TCGA-BQ-5880-01A
0 years, male, white, stage:Stage III, dead, 1314 days
5.0
TCGA-WN-AB4C-01A
0 years, female, white, stage:Stage I, alive, 1188 days
4.8
TCGA-SX-A71R-01A
0 years, male, white, stage:Stage I, alive, 1457 days
4.6
TCGA-B1-A655-01A
0 years, female, white, stage:Stage I, alive, 510 days
4.6
TCGA-G7-6795-01A
0 years, male, white, stage:Stage I, alive, 1194 days
4.3
TCGA-A4-A5Y0-01A
0 years, female, white, stage:Stage I, alive, 252 days
4.1
TCGA-G7-A4TM-01A
0 years, male, black or african american, stage:Stage I, alive, 768 days
3.9
TCGA-5P-A9KH-01A
0 years, male, white, stage:'--, alive, 2051 days
3.8
TCGA-BQ-5886-01A
0 years, male, white, stage:Stage III, alive, 792 days
3.8
TCGA-BQ-7058-01A
0 years, male, white, stage:Stage III, dead, 343 days
3.3
TCGA-A4-A6HP-01A
0 years, male, white, stage:Stage I, alive, 379 days
1.5
Show allShow less
RENAL CELL CARCINOMA - Protein relative expression (CPTAC)
Number of samples
194
Samples
Sample ID
Sample type
nRPX
CPT0007860003
Tumor
0.9
CPT0020120003
Tumor
0.8
CPT0092290003
Tumor
0.7
CPT0009060003
Tumor
0.7
CPT0014160003
Tumor
0.7
CPT0065430003
Tumor
0.7
CPT0012670003
Tumor
0.7
CPT0025050003
Tumor
0.6
CPT0014450004
Tumor
0.6
CPT0025290003
Tumor
0.5
CPT0077310003
Tumor
0.5
CPT0014370004
Tumor
0.5
CPT0012180003
Tumor
0.5
CPT0006630003
Tumor
0.5
CPT0012280003
Tumor
0.5
CPT0001540009
Tumor
0.5
CPT0017410003
Tumor
0.5
CPT0088480003
Tumor
0.4
CPT0026410003
Tumor
0.4
CPT0001500009
Tumor
0.4
CPT0025880003
Tumor
0.4
CPT0066470004
Tumor
0.4
CPT0078990003
Tumor
0.4
CPT0006440003
Tumor
0.4
CPT0012370003
Tumor
0.4
CPT0079410003
Tumor
0.4
CPT0025170003
Tumor
0.4
CPT0065750003
Tumor
0.4
CPT0079270003
Tumor
0.4
CPT0086950003
Tumor
0.4
CPT0077110003
Tumor
0.4
CPT0000780007
Tumor
0.3
CPT0012080003
Tumor
0.3
CPT0023690003
Tumor
0.3
CPT0065810003
Tumor
0.3
CPT0086030003
Tumor
0.3
CPT0009000003
Tumor
0.3
CPT0075560003
Tumor
0.3
CPT0071150004
Tumor
0.3
CPT0065690003
Tumor
0.3
CPT0019990003
Tumor
0.3
CPT0086360003
Tumor
0.3
CPT0015730003
Tumor
0.3
CPT0078930003
Tumor
0.2
CPT0084560003
Tumor
0.2
CPT0078510003
Tumor
0.2
CPT0092730003
Tumor
0.2
CPT0077490003
Tumor
0.2
CPT0064370003
Tumor
0.2
CPT0024670003
Tumor
0.2
CPT0017850003
Tumor
0.2
CPT0087040003
Tumor
0.2
CPT0000870016
Tumor
0.2
CPT0086870003
Tumor
0.2
CPT0021240003
Tumor
0.2
CPT0010160003
Tumor
0.2
CPT0086820003
Tumor
0.2
CPT0075130003
Tumor
0.2
CPT0088900003
Tumor
0.2
CPT0011410003
Tumor
0.2
CPT0012550003
Tumor
0.2
CPT0081880003
Tumor
0.2
CPT0089460004
Tumor
0.1
CPT0065930003
Tumor
0.1
CPT0089020003
Tumor
0.1
CPT0085670003
Tumor
0.1
CPT0015810003
Tumor
0.1
CPT0011240003
Tumor
0.1
CPT0079230003
Tumor
0.1
CPT0069160003
Tumor
0.1
CPT0081990003
Tumor
0.1
CPT0081620001
Normal
0.1
CPT0001220008
Tumor
0.1
CPT0078830003
Tumor
0.1
CPT0000640003
Tumor
0.1
CPT0063320003
Tumor
0.1
CPT0063630003
Tumor
0.1
CPT0088630003
Tumor
0.1
CPT0076330003
Tumor
0.1
CPT0006950001
Normal
0.1
CPT0065870003
Tumor
0.1
CPT0092790003
Tumor
0.1
CPT0081600003
Tumor
0.1
CPT0023350003
Tumor
0.1
CPT0088690003
Tumor
0.1
CPT0010110003
Tumor
0.1
CPT0015910003
Tumor
0.1
CPT0002350011
Tumor
0.1
CPT0025580004
Tumor
0.0
CPT0025110003
Tumor
0.0
CPT0077320001
Normal
0.0
CPT0079380003
Tumor
0.0
CPT0092160003
Tumor
0.0
CPT0001230001
Normal
0.0
CPT0088780001
Normal
0.0
CPT0088970003
Tumor
0.0
CPT0002270011
Tumor
0.0
CPT0006900003
Tumor
0.0
CPT0088640003
Normal
0.0
CPT0079480003
Tumor
0.0
CPT0012920003
Normal
0.0
CPT0077140001
Normal
0.0
CPT0078940001
Normal
0.0
CPT0019130003
Tumor
-0.1
CPT0025610001
Normal
-0.1
CPT0002370001
Normal
-0.1
CPT0020020001
Normal
-0.1
CPT0075720003
Tumor
-0.1
CPT0084590001
Normal
-0.1
CPT0065450001
Normal
-0.1
CPT0069000003
Tumor
-0.1
CPT0010120001
Normal
-0.1
CPT0082010001
Normal
-0.1
CPT0025350003
Tumor
-0.1
CPT0078840001
Normal
-0.1
CPT0079180003
Tumor
-0.1
CPT0088760003
Tumor
-0.1
CPT0025920001
Normal
-0.1
CPT0069010001
Normal
-0.1
CPT0012900004
Tumor
-0.1
CPT0001180009
Tumor
-0.1
CPT0078660003
Tumor
-0.1
CPT0000660001
Normal
-0.1
CPT0000790001
Normal
-0.1
CPT0007320003
Tumor
-0.1
CPT0088500001
Normal
-0.1
CPT0006530001
Normal
-0.1
CPT0023710001
Normal
-0.1
CPT0078800003
Tumor
-0.1
CPT0007470001
Normal
-0.1
CPT0076350001
Normal
-0.1
CPT0001510001
Normal
-0.1
CPT0000890001
Normal
-0.2
CPT0088710001
Normal
-0.2
CPT0001260009
Tumor
-0.2
CPT0063640001
Normal
-0.2
CPT0088550004
Tumor
-0.2
CPT0065820001
Normal
-0.2
CPT0089480003
Normal
-0.2
CPT0063330001
Normal
-0.2
CPT0086830003
Normal
-0.2
CPT0009020003
Normal
-0.2
CPT0092190003
Normal
-0.2
CPT0010170001
Normal
-0.2
CPT0064400001
Normal
-0.2
CPT0075570001
Normal
-0.2
CPT0012640003
Normal
-0.2
CPT0017450001
Normal
-0.2
CPT0086890003
Normal
-0.2
CPT0014130001
Normal
-0.2
CPT0025230003
Tumor
-0.2
CPT0069190001
Normal
-0.2
CPT0009080003
Normal
-0.2
CPT0019160001
Normal
-0.2
CPT0077500001
Normal
-0.2
CPT0012090003
Normal
-0.3
CPT0066430001
Normal
-0.3
CPT0007870001
Normal
-0.3
CPT0001190001
Normal
-0.3
CPT0012570003
Normal
-0.3
CPT0086370003
Normal
-0.3
CPT0014470001
Normal
-0.3
CPT0092310003
Normal
-0.3
CPT0023360001
Normal
-0.3
CPT0012770003
Normal
-0.3
CPT0086970003
Normal
-0.3
CPT0079510001
Normal
-0.3
CPT0087050003
Normal
-0.3
CPT0089040001
Normal
-0.3
CPT0092800003
Normal
-0.3
CPT0079000001
Normal
-0.3
CPT0018250001
Normal
-0.3
CPT0025060001
Normal
-0.3
CPT0014350001
Normal
-0.3
CPT0024680001
Normal
-0.3
CPT0088920001
Normal
-0.3
CPT0079300001
Normal
-0.3
CPT0006730001
Normal
-0.3
CPT0026420001
Normal
-0.3
CPT0013790003
Normal
-0.4
CPT0001550001
Normal
-0.4
CPT0066480003
Tumor
-0.4
CPT0079430001
Normal
-0.4
CPT0088570001
Normal
-0.4
CPT0078530001
Normal
-0.4
CPT0001270001
Normal
-0.4
CPT0066520001
Normal
-0.4
CPT0092740003
Normal
-0.5
CPT0001340003
Tumor
-0.5
CPT0012290003
Normal
-0.5
CPT0078670001
Normal
-0.6
CPT0075170001
Normal
-0.6
CPT0001350001
Normal
-0.6
CPT0020130001
Normal
-0.7
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RENAL CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
