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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMARCAL1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
22.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMARCAL1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.1
Number of samples
231
Samples
Sample
Description
TPM
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
4.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
3.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
2.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
2.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
127
Tumor
1.5
112
Tumor
1.4
113
Tumor
1.2
114
Normal
1.2
128
Normal
1.1
111
Normal
1.1
132
Normal
1.1
743
Tumor
1.1
146
Normal
1.0
188
Normal
0.9
138
Normal
0.9
396
Normal
0.9
465
Tumor
0.8
136
Normal
0.8
126
Normal
0.8
358
Normal
0.8
432
Normal
0.8
145
Tumor
0.7
388
Normal
0.7
357
Tumor
0.7
446
Normal
0.7
724
Normal
0.7
313
Tumor
0.7
172
Normal
0.7
124
Normal
0.7
394
Normal
0.7
342
Normal
0.7
186
Normal
0.7
312
Normal
0.7
436
Normal
0.7
468
Normal
0.7
162
Normal
0.7
366
Normal
0.7
187
Tumor
0.7
393
Tumor
0.6
278
Normal
0.6
141
Tumor
0.6
464
Normal
0.6
386
Normal
0.6
148
Normal
0.6
314
Normal
0.6
267
Tumor
0.6
456
Normal
0.6
452
Normal
0.6
161
Tumor
0.6
341
Tumor
0.6
434
Normal
0.6
428
Normal
0.6
272
Normal
0.5
258
Normal
0.5
715
Tumor
0.5
444
Normal
0.5
424
Normal
0.5
877
Tumor
0.5
447
Tumor
0.5
414
Normal
0.5
332
Normal
0.5
344
Normal
0.5
298
Normal
0.5
391
Tumor
0.5
685
Tumor
0.5
354
Normal
0.5
1016
Normal
0.5
362
Normal
0.5
367
Tumor
0.5
268
Normal
0.5
352
Normal
0.4
361
Tumor
0.4
392
Normal
0.4
196
Normal
0.4
497
Tumor
0.4
384
Normal
0.4
517
Tumor
0.4
427
Tumor
0.4
368
Normal
0.4
666
Normal
0.4
353
Tumor
0.4
925
Tumor
0.4
185
Tumor
0.4
435
Tumor
0.4
923
Tumor
0.4
222
Normal
0.4
574
Normal
0.4
262
Normal
0.4
286
Normal
0.4
297
Tumor
0.4
376
Normal
0.4
171
Tumor
0.4
142
Normal
0.4
445
Tumor
0.4
413
Tumor
0.4
232
Normal
0.3
217
Tumor
0.3
967
Tumor
0.3
567
Tumor
0.3
451
Tumor
0.3
917
Tumor
0.3
662
Normal
0.3
426
Normal
0.3
123
Tumor
0.3
365
Tumor
0.3
443
Tumor
0.3
721
Tumor
0.3
331
Tumor
0.3
383
Tumor
0.3
423
Tumor
0.3
641
Tumor
0.3
815
Tumor
0.3
813
Tumor
0.3
395
Tumor
0.3
982
Normal
0.3
491
Tumor
0.3
375
Tumor
0.3
192
Normal
0.2
814
Normal
0.2
147
Tumor
0.2
663
Tumor
0.2
965
Tumor
0.2
466
Normal
0.2
648
Normal
0.2
487
Tumor
0.2
218
Normal
0.2
642
Normal
0.2
665
Tumor
0.2
1028
Normal
0.2
422
Normal
0.2
433
Tumor
0.2
664
Normal
0.2
863
Tumor
0.2
563
Tumor
0.2
535
Tumor
0.2
778
Normal
0.2
356
Normal
0.2
943
Tumor
0.2
212
Normal
0.2
615
Tumor
0.2
697
Tumor
0.2
351
Tumor
0.2
431
Tumor
0.2
231
Tumor
0.2
568
Normal
0.2
135
Tumor
0.2
283
Tumor
0.2
713
Tumor
0.2
285
Tumor
0.2
867
Tumor
0.2
214
Normal
0.2
1031
Tumor
0.1
857
Tumor
0.1
964
Normal
0.1
672
Normal
0.1
755
Tumor
0.1
137
Tumor
0.1
865
Tumor
0.1
958
Normal
0.1
1032
Normal
0.1
858
Normal
0.1
912
Normal
0.1
421
Tumor
0.1
271
Tumor
0.1
227
Tumor
0.1
884
Normal
0.1
817
Tumor
0.1
628
Normal
0.1
277
Tumor
0.1
564
Normal
0.1
483
Tumor
0.1
951
Tumor
0.1
636
Normal
0.1
343
Tumor
0.1
698
Normal
0.1
211
Tumor
0.1
978
Normal
0.1
571
Tumor
0.1
756
Normal
0.1
224
Normal
0.1
411
Tumor
0.1
786
Normal
0.1
534
Normal
0.1
498
Normal
0.1
686
Normal
0.1
425
Tumor
0.1
818
Normal
0.1
916
Normal
0.0
926
Normal
0.0
911
Tumor
0.0
937
Tumor
0.0
1043
Tumor
0.0
493
Tumor
0.0
223
Tumor
0.0
915
Tumor
0.0
824
Normal
0.0
327
Tumor
0.0
823
Tumor
0.0
573
Tumor
0.0
955
Tumor
0.0
852
Normal
0.0
616
Normal
0.0
1042
Normal
0.0
914
Normal
0.0
881
Tumor
0.0
355
Tumor
0.0
213
Tumor
0.0
882
Normal
0.0
1021
Tumor
0.0
1041
Tumor
0.0
741
Tumor
0.0
737
Tumor
0.0
963
Tumor
0.0
1044
Normal
0.0
228
Normal
0.0
722
Normal
0.0
714
Normal
0.0
1014
Normal
0.0
921
Tumor
0.0
777
Tumor
0.0
488
Normal
0.0
976
Normal
0.0
924
Normal
0.0
463
Tumor
0.0
977
Tumor
0.0
671
Tumor
0.0
415
Tumor
0.0
918
Normal
-0.1
1045
Tumor
-0.1
878
Normal
-0.1
1026
Normal
-0.1
617
Tumor
-0.1
1046
Normal
-0.1
746
Normal
-0.1
984
Normal
-0.1
956
Normal
-0.1
528
Normal
-0.1
953
Tumor
-0.1
938
Normal
-0.1
195
Tumor
-0.1
257
Tumor
-0.1
311
Tumor
-0.1
983
Tumor
-0.1
861
Tumor
-0.1
954
Normal
-0.1
1027
Tumor
-0.1
448
Normal
-0.1
975
Tumor
-0.1
716
Normal
-0.1
944
Normal
-0.1
363
Tumor
-0.1
191
Tumor
-0.1
851
Tumor
-0.1
785
Tumor
-0.1
913
Tumor
-0.1
968
Normal
-0.1
455
Tumor
-0.1
387
Tumor
-0.1
742
Normal
-0.1
957
Tumor
-0.1
868
Normal
-0.1
416
Normal
-0.1
261
Tumor
-0.2
816
Normal
-0.2
494
Normal
-0.2
874
Normal
-0.2
866
Normal
-0.2
744
Normal
-0.2
536
Normal
-0.2
1022
Normal
-0.2
558
Normal
-0.2
412
Normal
-0.2
553
Tumor
-0.2
385
Tumor
-0.2
284
Normal
-0.2
873
Tumor
-0.2
727
Tumor
-0.2
484
Normal
-0.2
472
Normal
-0.2
546
Normal
-0.2
467
Tumor
-0.2
492
Normal
-0.2
482
Normal
-0.2
728
Normal
-0.2
572
Normal
-0.2
862
Normal
-0.2
328
Normal
-0.2
478
Normal
-0.2
221
Tumor
-0.2
1013
Tumor
-0.2
527
Tumor
-0.2
538
Normal
-0.2
922
Normal
-0.2
461
Tumor
-0.2
477
Tumor
-0.2
545
Tumor
-0.2
883
Tumor
-0.2
696
Normal
-0.2
1015
Tumor
-0.2
533
Tumor
-0.3
864
Normal
-0.3
1025
Tumor
-0.3
738
Normal
-0.3
557
Tumor
-0.3
695
Tumor
-0.3
723
Tumor
-0.3
618
Normal
-0.3
966
Normal
-0.3
481
Tumor
-0.3
364
Normal
-0.3
537
Tumor
-0.3
554
Normal
-0.3
462
Normal
-0.3
474
Normal
-0.3
635
Tumor
-0.3
647
Tumor
-0.3
952
Normal
-0.4
125
Tumor
-0.4
627
Tumor
-0.4
981
Tumor
-0.4
661
Tumor
-0.5
473
Tumor
-0.5
131
Tumor
-0.5
471
Tumor
-0.5
516
Normal
-0.6
514
Normal
-0.6
524
Normal
-0.6
515
Tumor
-0.7
523
Tumor
-0.8
518
Normal
-0.8
526
Normal
-0.8
745
Tumor
-0.8
525
Tumor
-0.8
513
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
