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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB1A is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
87.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
249.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
235.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
213.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
199.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
199.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
198.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
176.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
174.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
174.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
166.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
163.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
162.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
162.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
161.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
159.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
156.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
155.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
153.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
152.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
151.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
145.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
145.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
145.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
145.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
144.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
143.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
141.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
141.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
140.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
139.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
138.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
137.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
137.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
137.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
136.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
135.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
133.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
132.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
131.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
131.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
131.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
131.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
131.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
131.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
130.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
130.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
130.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
129.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
129.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
129.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
128.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
125.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
125.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
124.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
121.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
121.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
121.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
121.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
121.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
119.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
118.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
118.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
118.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
118.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
116.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
116.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
116.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
116.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
115.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
114.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
114.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
113.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
113.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
113.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
112.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
112.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
111.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
110.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
110.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
110.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
109.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
109.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
108.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
108.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
108.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
108.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
106.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
106.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
105.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
105.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
105.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
104.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
104.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
104.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
104.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
103.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
103.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
103.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
103.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
103.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
103.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
102.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
102.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
102.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
102.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
101.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
101.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
101.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
101.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
101.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
101.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
101.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
101.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
101.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
100.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
100.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
100.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
99.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
99.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
99.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
98.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
98.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
98.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
97.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
97.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
97.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
97.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
97.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
97.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
97.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
97.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
96.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
96.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
95.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
95.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
94.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
94.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
94.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
93.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
93.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
93.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
92.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
92.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
91.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
90.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
90.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
90.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
89.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
89.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
88.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
88.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
88.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
88.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
88.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
87.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
87.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
86.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
86.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
86.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
86.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
86.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
86.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
85.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
85.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
85.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
85.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
85.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
85.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
85.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
84.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
84.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
84.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
84.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
84.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
84.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
83.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
83.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
83.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
82.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
82.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
82.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
82.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
82.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
82.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
81.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
81.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
81.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
80.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
80.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
79.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
79.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
79.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
79.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
79.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
78.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
78.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
78.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
78.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
78.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
77.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
77.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
77.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
77.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
77.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
76.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
76.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
76.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
76.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
76.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
76.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
75.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
75.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
75.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
75.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
75.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
75.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
74.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
74.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
74.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
73.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
73.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
73.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
73.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
72.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
72.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
72.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
72.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
72.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
72.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
71.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
71.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
71.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
71.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
70.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
70.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
70.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
70.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
70.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
70.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
69.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
69.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
69.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
69.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
69.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
68.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
68.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
68.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
68.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
68.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
68.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
68.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
68.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
67.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
67.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
67.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
67.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
66.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
66.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
65.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
64.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
64.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
63.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
63.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
63.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
63.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
63.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
62.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
62.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
62.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
62.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
62.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
62.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
62.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
62.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
61.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
61.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
61.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
61.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
61.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
60.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
60.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
60.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
59.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
59.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
59.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
59.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
59.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
58.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
58.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
58.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
58.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
58.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
58.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
58.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
57.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
57.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
57.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
57.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
57.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
57.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
56.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
56.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
56.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
56.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
55.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
55.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
55.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
55.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
54.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
54.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
54.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
52.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
52.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
51.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
51.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
51.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
51.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
50.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
49.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
48.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
48.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
48.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
48.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
48.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
47.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
47.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
46.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
46.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
45.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
44.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
43.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
42.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
42.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
41.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
41.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
39.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
38.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
38.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
37.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
36.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
36.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
35.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
35.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
34.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
34.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
33.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
32.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
31.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
28.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
28.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
27.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
23.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
23.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
22.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
20.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
19.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
18.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
18.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
16.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
14.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB1A is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
66.7
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
162.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
133.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
132.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
130.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
127.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
119.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
114.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
110.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
109.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
108.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
106.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
104.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
103.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
102.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
101.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
100.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
98.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
98.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
98.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
98.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
96.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
96.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
94.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
94.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
92.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
91.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
91.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
90.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
89.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
89.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
88.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
86.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
86.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
85.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
85.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
85.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
84.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
84.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
83.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
83.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
83.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
83.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
82.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
82.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
82.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
82.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
81.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
81.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
81.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
81.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
80.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
80.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
79.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
79.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
79.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
79.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
79.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
78.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
78.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
78.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
78.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
78.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
77.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
77.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
77.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
77.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
76.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
76.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
76.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
76.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
76.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
76.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
74.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
74.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
74.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
74.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
74.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
74.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
73.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
73.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
73.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
73.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
72.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
72.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
72.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
72.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
71.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
71.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
70.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
70.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
70.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
69.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
69.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
69.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
69.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
69.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
68.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
68.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
67.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
67.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
66.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
66.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
66.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
66.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
66.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
66.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
66.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
65.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
65.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
65.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
65.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
65.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
64.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
64.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
64.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
64.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
64.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
64.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
64.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
63.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
63.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
63.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
63.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
62.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
62.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
62.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
62.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
62.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
62.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
61.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
61.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
61.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
60.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
60.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
60.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
60.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
60.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
59.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
59.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
59.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
59.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
59.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
58.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
58.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
58.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
58.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
57.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
57.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
57.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
56.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
56.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
56.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
56.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
56.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
55.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
55.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
55.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
55.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
54.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
54.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
54.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
54.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
54.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
54.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
53.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
53.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
53.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
53.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
53.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
53.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
53.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
53.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
52.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
52.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
52.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
51.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
51.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
51.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
51.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
50.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
50.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
50.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
49.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
49.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
48.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
48.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
48.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
48.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
48.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
48.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
48.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
48.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
47.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
47.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
46.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
46.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
46.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
46.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
45.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
45.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
45.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
44.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
43.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
43.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
42.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
42.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
42.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
42.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
42.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
42.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
41.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
41.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
41.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
39.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
39.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
38.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
38.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
36.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
35.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
35.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
35.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
34.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
33.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
33.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
32.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
31.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
29.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
25.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
24.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
491
Tumor
0.8
537
Tumor
0.8
527
Tumor
0.7
713
Tumor
0.7
697
Tumor
0.7
745
Tumor
0.6
125
Tumor
0.6
1027
Tumor
0.6
923
Tumor
0.5
1025
Tumor
0.5
567
Tumor
0.5
1013
Tumor
0.5
227
Tumor
0.5
957
Tumor
0.5
257
Tumor
0.5
1021
Tumor
0.4
545
Tumor
0.4
147
Tumor
0.4
685
Tumor
0.4
285
Tumor
0.4
573
Tumor
0.4
471
Tumor
0.4
223
Tumor
0.4
983
Tumor
0.4
525
Tumor
0.4
953
Tumor
0.4
724
Normal
0.4
823
Tumor
0.4
813
Tumor
0.3
131
Tumor
0.3
283
Tumor
0.3
523
Tumor
0.3
917
Tumor
0.3
363
Tumor
0.3
517
Tumor
0.3
877
Tumor
0.3
553
Tumor
0.3
951
Tumor
0.3
327
Tumor
0.3
487
Tumor
0.3
967
Tumor
0.3
963
Tumor
0.2
863
Tumor
0.2
965
Tumor
0.2
921
Tumor
0.2
851
Tumor
0.2
1031
Tumor
0.2
978
Normal
0.2
1014
Normal
0.2
755
Tumor
0.2
817
Tumor
0.2
1043
Tumor
0.2
481
Tumor
0.2
311
Tumor
0.2
557
Tumor
0.2
857
Tumor
0.2
385
Tumor
0.2
135
Tumor
0.2
815
Tumor
0.2
535
Tumor
0.2
463
Tumor
0.2
478
Normal
0.2
524
Normal
0.2
743
Tumor
0.2
536
Normal
0.1
447
Tumor
0.1
1026
Normal
0.1
571
Tumor
0.1
916
Normal
0.1
421
Tumor
0.1
445
Tumor
0.1
1042
Normal
0.1
1032
Normal
0.1
925
Tumor
0.1
413
Tumor
0.1
211
Tumor
0.1
497
Tumor
0.1
1044
Normal
0.1
727
Tumor
0.1
964
Normal
0.1
1015
Tumor
0.1
514
Normal
0.1
926
Normal
0.1
952
Normal
0.1
721
Tumor
0.1
715
Tumor
0.1
1028
Normal
0.1
271
Tumor
0.1
873
Tumor
0.1
563
Tumor
0.1
493
Tumor
0.1
937
Tumor
0.1
943
Tumor
0.1
528
Normal
0.1
483
Tumor
0.1
533
Tumor
0.1
492
Normal
0.1
671
Tumor
0.1
958
Normal
0.1
191
Tumor
0.1
984
Normal
0.1
357
Tumor
0.1
554
Normal
0.1
171
Tumor
0.1
881
Tumor
0.1
313
Tumor
0.1
975
Tumor
0.0
351
Tumor
0.0
355
Tumor
0.0
696
Normal
0.0
647
Tumor
0.0
484
Normal
0.0
976
Normal
0.0
145
Tumor
0.0
944
Normal
0.0
212
Normal
0.0
918
Normal
0.0
617
Tumor
0.0
778
Normal
0.0
966
Normal
0.0
1022
Normal
0.0
494
Normal
0.0
641
Tumor
0.0
868
Normal
0.0
538
Normal
0.0
977
Tumor
0.0
867
Tumor
0.0
968
Normal
0.0
435
Tumor
0.0
518
Normal
0.0
864
Normal
0.0
488
Normal
0.0
411
Tumor
0.0
415
Tumor
0.0
665
Tumor
0.0
954
Normal
0.0
635
Tumor
0.0
328
Normal
0.0
331
Tumor
0.0
814
Normal
0.0
472
Normal
0.0
534
Normal
0.0
391
Tumor
0.0
982
Normal
0.0
981
Tumor
0.0
938
Normal
0.0
526
Normal
0.0
558
Normal
0.0
915
Tumor
0.0
714
Normal
0.0
195
Tumor
0.0
286
Normal
0.0
922
Normal
0.0
722
Normal
0.0
924
Normal
0.0
498
Normal
0.0
816
Normal
0.0
187
Tumor
0.0
364
Normal
0.0
728
Normal
0.0
412
Normal
0.0
686
Normal
0.0
884
Normal
0.0
515
Tumor
0.0
716
Normal
0.0
824
Normal
0.0
866
Normal
0.0
546
Normal
0.0
462
Normal
0.0
343
Tumor
0.0
443
Tumor
0.0
297
Tumor
-0.1
356
Normal
-0.1
874
Normal
-0.1
482
Normal
-0.1
467
Tumor
-0.1
341
Tumor
-0.1
912
Normal
-0.1
474
Normal
-0.1
284
Normal
-0.1
455
Tumor
-0.1
1016
Normal
-0.1
698
Normal
-0.1
448
Normal
-0.1
882
Normal
-0.1
367
Tumor
-0.1
1045
Tumor
-0.1
956
Normal
-0.1
142
Normal
-0.1
393
Tumor
-0.1
461
Tumor
-0.1
852
Normal
-0.1
861
Tumor
-0.1
1046
Normal
-0.1
737
Tumor
-0.1
955
Tumor
-0.1
231
Tumor
-0.1
224
Normal
-0.1
473
Tumor
-0.1
228
Normal
-0.1
756
Normal
-0.1
127
Tumor
-0.1
516
Normal
-0.1
572
Normal
-0.1
616
Normal
-0.1
818
Normal
-0.1
425
Tumor
-0.1
451
Tumor
-0.1
746
Normal
-0.1
387
Tumor
-0.1
723
Tumor
-0.1
661
Tumor
-0.1
513
Tumor
-0.1
416
Normal
-0.1
375
Tumor
-0.1
862
Normal
-0.1
368
Normal
-0.1
261
Tumor
-0.1
161
Tumor
-0.1
384
Normal
-0.1
786
Normal
-0.1
858
Normal
-0.1
221
Tumor
-0.1
113
Tumor
-0.1
352
Normal
-0.1
427
Tumor
-0.1
314
Normal
-0.1
785
Tumor
-0.1
738
Normal
-0.1
376
Normal
-0.1
914
Normal
-0.1
262
Normal
-0.1
217
Tumor
-0.2
695
Tumor
-0.2
185
Tumor
-0.2
878
Normal
-0.2
636
Normal
-0.2
213
Tumor
-0.2
1041
Tumor
-0.2
913
Tumor
-0.2
353
Tumor
-0.2
362
Normal
-0.2
395
Tumor
-0.2
466
Normal
-0.2
433
Tumor
-0.2
124
Normal
-0.2
663
Tumor
-0.2
232
Normal
-0.2
628
Normal
-0.2
392
Normal
-0.2
383
Tumor
-0.2
192
Normal
-0.2
464
Normal
-0.2
111
Normal
-0.2
218
Normal
-0.2
128
Normal
-0.2
564
Normal
-0.2
137
Tumor
-0.2
361
Tumor
-0.2
146
Normal
-0.2
141
Tumor
-0.2
618
Normal
-0.2
126
Normal
-0.2
354
Normal
-0.2
196
Normal
-0.2
568
Normal
-0.2
272
Normal
-0.2
332
Normal
-0.2
422
Normal
-0.2
664
Normal
-0.2
883
Tumor
-0.2
436
Normal
-0.2
642
Normal
-0.2
434
Normal
-0.2
162
Normal
-0.2
432
Normal
-0.2
742
Normal
-0.2
148
Normal
-0.2
777
Tumor
-0.2
268
Normal
-0.2
615
Tumor
-0.2
424
Normal
-0.2
312
Normal
-0.3
662
Normal
-0.3
222
Normal
-0.3
672
Normal
-0.3
188
Normal
-0.3
396
Normal
-0.3
444
Normal
-0.3
214
Normal
-0.3
414
Normal
-0.3
477
Tumor
-0.3
138
Normal
-0.3
431
Tumor
-0.3
648
Normal
-0.3
574
Normal
-0.3
911
Tumor
-0.3
865
Tumor
-0.3
186
Normal
-0.3
386
Normal
-0.3
258
Normal
-0.3
172
Normal
-0.3
358
Normal
-0.3
446
Normal
-0.3
298
Normal
-0.3
468
Normal
-0.3
344
Normal
-0.3
394
Normal
-0.3
123
Tumor
-0.3
278
Normal
-0.3
744
Normal
-0.3
627
Tumor
-0.3
426
Normal
-0.3
136
Normal
-0.3
428
Normal
-0.3
666
Normal
-0.3
456
Normal
-0.3
388
Normal
-0.3
277
Tumor
-0.3
342
Normal
-0.4
365
Tumor
-0.4
132
Normal
-0.4
267
Tumor
-0.4
114
Normal
-0.4
741
Tumor
-0.4
366
Normal
-0.4
452
Normal
-0.4
112
Tumor
-0.5
423
Tumor
-0.5
465
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
