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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RABGGTB is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
111.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
103.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
99.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
89.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
87.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
82.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
79.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
77.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
76.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
76.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
74.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
72.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
71.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
70.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
69.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
69.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
69.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
68.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
68.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
66.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
66.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
64.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
63.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
62.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
62.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
61.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
61.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
60.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
59.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
59.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
58.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
58.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
58.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
57.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
57.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
56.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
56.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
56.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
55.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
54.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
54.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
54.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
54.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
54.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
54.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
53.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
53.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
53.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
53.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
52.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
52.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
52.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
52.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
51.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
51.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
50.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
50.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
49.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
49.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
49.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
49.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
49.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
49.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
48.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
48.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
48.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
47.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
47.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
47.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
47.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
47.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
47.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
46.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
46.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
46.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
46.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
46.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
46.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
46.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
46.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
46.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
45.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
45.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
44.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
44.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
44.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
43.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
43.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
43.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
43.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
43.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
42.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
42.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
42.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
42.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
42.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
42.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
42.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
42.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
42.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
41.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
41.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
41.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
41.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
41.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
41.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
40.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
40.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
40.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
40.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
40.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
40.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
39.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
39.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
39.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
39.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
39.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
39.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
38.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
38.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
38.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
38.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
38.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
38.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
38.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
38.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
37.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
37.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
37.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
37.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
37.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
36.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
36.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
36.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
36.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
35.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
35.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
35.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
35.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
35.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
35.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
35.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
35.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
35.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
35.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
35.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
34.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
34.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
34.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
34.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
34.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
34.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
34.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
34.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
34.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
34.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
34.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
34.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
34.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
33.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
33.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
33.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
33.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
33.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
33.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
33.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
33.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
33.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
33.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
33.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
33.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
33.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
33.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
33.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
33.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
32.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
32.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
32.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
32.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
32.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
32.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
32.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
32.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
32.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
32.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
32.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
32.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
32.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
31.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
31.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
31.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
31.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
31.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
31.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
31.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
31.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
31.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
31.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
31.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
31.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
31.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
31.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
31.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
31.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
31.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
30.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
30.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
30.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
30.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
30.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
30.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
30.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
30.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
30.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
30.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
30.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
30.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
30.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
29.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
29.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
29.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
29.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
29.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
29.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
29.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
29.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
29.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
29.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
29.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
29.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
28.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
28.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
28.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
28.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
28.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
27.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
27.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
27.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
27.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
27.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
27.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
27.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
27.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
27.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
27.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
26.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
26.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
26.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
26.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
26.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
26.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
26.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
26.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
25.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
25.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
25.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
25.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
25.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
25.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
25.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
24.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
24.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
24.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
24.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
24.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
24.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
24.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
24.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
23.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
23.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
23.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
23.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
23.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
23.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
23.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
23.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
22.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
22.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
22.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
22.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
22.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
21.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
21.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
21.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
20.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
20.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
20.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
20.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
20.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
19.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
19.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
19.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
19.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
19.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
18.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
18.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
18.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
17.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
17.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
16.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
15.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
14.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
13.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
12.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RABGGTB is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
50.7
Number of samples
231
Samples
Sample
Description
TPM
DO45303
0 years, female, NA, stage:3, alive, 990 days
149.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
133.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
129.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
126.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
123.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
111.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
108.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
108.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
105.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
102.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
102.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
100.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
94.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
89.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
88.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
88.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
86.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
84.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
83.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
82.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
81.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
80.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
78.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
78.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
77.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
77.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
76.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
76.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
76.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
75.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
75.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
75.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
73.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
73.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
72.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
71.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
71.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
71.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
70.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
70.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
70.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
69.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
68.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
67.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
67.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
65.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
64.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
64.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
64.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
64.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
63.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
63.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
63.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
63.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
62.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
61.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
61.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
61.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
60.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
60.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
60.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
59.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
59.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
58.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
58.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
58.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
57.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
57.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
56.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
56.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
56.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
56.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
55.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
55.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
55.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
54.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
54.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
54.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
53.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
53.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
53.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
53.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
53.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
53.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
53.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
52.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
52.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
52.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
52.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
52.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
51.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
51.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
51.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
51.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
51.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
51.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
51.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
50.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
50.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
50.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
50.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
50.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
49.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
49.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
49.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
48.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
48.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
48.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
48.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
48.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
48.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
48.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
47.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
47.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
47.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
47.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
47.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
46.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
46.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
45.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
45.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
45.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
45.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
43.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
43.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
43.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
43.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
42.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
42.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
42.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
42.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
42.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
42.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
42.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
41.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
41.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
41.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
41.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
40.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
40.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
40.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
39.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
38.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
38.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
38.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
38.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
37.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
37.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
37.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
37.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
37.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
36.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
36.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
36.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
36.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
36.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
36.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
36.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
35.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
35.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
35.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
35.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
35.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
35.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
35.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
35.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
35.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
34.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
34.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
34.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
34.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
34.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
34.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
34.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
34.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
33.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
33.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
33.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
33.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
33.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
33.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
33.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
33.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
32.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
32.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
32.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
32.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
32.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
32.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
31.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
31.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
31.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
30.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
30.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
30.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
30.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
30.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
29.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
29.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
29.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
29.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
29.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
29.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
28.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
28.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
28.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
28.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
27.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
27.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
27.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
27.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
27.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
26.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
26.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
25.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
25.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
23.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
23.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
23.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
22.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
22.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
22.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
21.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.0
865
Tumor
0.8
777
Tumor
0.7
1026
Normal
0.6
957
Tumor
0.6
981
Tumor
0.6
663
Tumor
0.6
1025
Tumor
0.6
527
Tumor
0.6
955
Tumor
0.6
755
Tumor
0.5
537
Tumor
0.5
745
Tumor
0.5
956
Normal
0.5
513
Tumor
0.5
1042
Normal
0.5
912
Normal
0.4
943
Tumor
0.4
1043
Tumor
0.4
414
Normal
0.4
327
Tumor
0.4
355
Tumor
0.4
515
Tumor
0.4
944
Normal
0.4
436
Normal
0.4
483
Tumor
0.4
1022
Normal
0.4
426
Normal
0.4
523
Tumor
0.4
416
Normal
0.4
746
Normal
0.4
1014
Normal
0.4
884
Normal
0.4
915
Tumor
0.4
924
Normal
0.4
982
Normal
0.4
617
Tumor
0.4
1041
Tumor
0.4
1013
Tumor
0.4
422
Normal
0.3
741
Tumor
0.3
742
Normal
0.3
952
Normal
0.3
966
Normal
0.3
567
Tumor
0.3
862
Normal
0.3
298
Normal
0.3
353
Tumor
0.3
484
Normal
0.3
715
Tumor
0.3
1032
Normal
0.3
965
Tumor
0.3
882
Normal
0.3
1016
Normal
0.3
756
Normal
0.3
517
Tumor
0.3
978
Normal
0.3
737
Tumor
0.3
914
Normal
0.3
823
Tumor
0.3
131
Tumor
0.3
697
Tumor
0.3
545
Tumor
0.3
714
Normal
0.3
114
Normal
0.3
685
Tumor
0.3
861
Tumor
0.3
546
Normal
0.3
411
Tumor
0.3
698
Normal
0.3
223
Tumor
0.3
1046
Normal
0.3
1028
Normal
0.3
868
Normal
0.3
448
Normal
0.3
864
Normal
0.3
211
Tumor
0.3
128
Normal
0.3
958
Normal
0.3
534
Normal
0.3
518
Normal
0.3
412
Normal
0.3
926
Normal
0.3
228
Normal
0.3
568
Normal
0.3
863
Tumor
0.3
462
Normal
0.3
212
Normal
0.3
918
Normal
0.3
953
Tumor
0.2
472
Normal
0.2
824
Normal
0.2
938
Normal
0.2
431
Tumor
0.2
696
Normal
0.2
564
Normal
0.2
878
Normal
0.2
723
Tumor
0.2
937
Tumor
0.2
1044
Normal
0.2
261
Tumor
0.2
258
Normal
0.2
722
Normal
0.2
272
Normal
0.2
278
Normal
0.2
123
Tumor
0.2
923
Tumor
0.2
618
Normal
0.2
851
Tumor
0.2
286
Normal
0.2
314
Normal
0.2
172
Normal
0.2
466
Normal
0.2
983
Tumor
0.2
911
Tumor
0.2
487
Tumor
0.2
364
Normal
0.2
976
Normal
0.2
916
Normal
0.2
738
Normal
0.2
482
Normal
0.2
312
Normal
0.2
186
Normal
0.2
816
Normal
0.2
526
Normal
0.2
145
Tumor
0.2
554
Normal
0.2
464
Normal
0.2
328
Normal
0.2
494
Normal
0.2
262
Normal
0.2
493
Tumor
0.2
187
Tumor
0.2
535
Tumor
0.2
968
Normal
0.2
716
Normal
0.2
285
Tumor
0.2
786
Normal
0.2
361
Tumor
0.1
516
Normal
0.1
497
Tumor
0.1
432
Normal
0.1
332
Normal
0.1
925
Tumor
0.1
362
Normal
0.1
525
Tumor
0.1
785
Tumor
0.1
481
Tumor
0.1
721
Tumor
0.1
488
Normal
0.1
148
Normal
0.1
1021
Tumor
0.1
456
Normal
0.1
922
Normal
0.1
136
Normal
0.1
232
Normal
0.1
446
Normal
0.1
728
Normal
0.1
366
Normal
0.1
538
Normal
0.1
964
Normal
0.1
615
Tumor
0.1
951
Tumor
0.1
514
Normal
0.1
815
Tumor
0.1
558
Normal
0.1
536
Normal
0.1
874
Normal
0.1
424
Normal
0.1
984
Normal
0.1
627
Tumor
0.1
883
Tumor
0.1
1015
Tumor
0.1
528
Normal
0.1
428
Normal
0.1
188
Normal
0.1
111
Normal
0.1
162
Normal
0.1
356
Normal
0.1
873
Tumor
0.1
913
Tumor
0.1
648
Normal
0.1
557
Tumor
0.1
724
Normal
0.1
616
Normal
0.1
191
Tumor
0.1
954
Normal
0.1
137
Tumor
0.1
647
Tumor
0.1
365
Tumor
0.1
132
Normal
0.1
778
Normal
0.1
474
Normal
0.1
461
Tumor
0.1
664
Normal
0.1
445
Tumor
0.1
852
Normal
0.1
342
Normal
0.0
642
Normal
0.0
434
Normal
0.0
357
Tumor
0.0
368
Normal
0.0
572
Normal
0.0
666
Normal
0.0
662
Normal
0.0
386
Normal
0.0
376
Normal
0.0
126
Normal
0.0
138
Normal
0.0
161
Tumor
0.0
473
Tumor
0.0
858
Normal
0.0
492
Normal
0.0
1045
Tumor
0.0
468
Normal
0.0
491
Tumor
0.0
967
Tumor
0.0
455
Tumor
0.0
818
Normal
0.0
171
Tumor
0.0
283
Tumor
0.0
124
Normal
0.0
471
Tumor
0.0
478
Normal
0.0
447
Tumor
0.0
686
Normal
0.0
866
Normal
0.0
628
Normal
0.0
977
Tumor
0.0
574
Normal
0.0
553
Tumor
0.0
524
Normal
0.0
231
Tumor
0.0
727
Tumor
0.0
394
Normal
0.0
443
Tumor
0.0
267
Tumor
0.0
435
Tumor
0.0
284
Normal
0.0
222
Normal
0.0
744
Normal
0.0
388
Normal
0.0
196
Normal
0.0
257
Tumor
-0.1
268
Normal
-0.1
571
Tumor
-0.1
146
Normal
-0.1
498
Normal
-0.1
713
Tumor
-0.1
363
Tumor
-0.1
415
Tumor
-0.1
195
Tumor
-0.1
135
Tumor
-0.1
218
Normal
-0.1
297
Tumor
-0.1
695
Tumor
-0.1
125
Tumor
-0.1
384
Normal
-0.1
533
Tumor
-0.1
452
Normal
-0.1
665
Tumor
-0.1
113
Tumor
-0.1
367
Tumor
-0.1
127
Tumor
-0.1
877
Tumor
-0.1
395
Tumor
-0.1
142
Normal
-0.1
185
Tumor
-0.1
867
Tumor
-0.1
813
Tumor
-0.1
358
Normal
-0.1
392
Normal
-0.1
214
Normal
-0.1
227
Tumor
-0.1
147
Tumor
-0.1
311
Tumor
-0.1
224
Normal
-0.1
661
Tumor
-0.1
563
Tumor
-0.1
672
Normal
-0.1
383
Tumor
-0.1
463
Tumor
-0.1
141
Tumor
-0.1
277
Tumor
-0.1
421
Tumor
-0.1
352
Normal
-0.2
391
Tumor
-0.2
635
Tumor
-0.2
881
Tumor
-0.2
396
Normal
-0.2
963
Tumor
-0.2
217
Tumor
-0.2
975
Tumor
-0.2
467
Tumor
-0.2
857
Tumor
-0.2
213
Tumor
-0.2
375
Tumor
-0.2
271
Tumor
-0.2
477
Tumor
-0.2
921
Tumor
-0.2
192
Normal
-0.2
413
Tumor
-0.2
814
Normal
-0.2
451
Tumor
-0.2
354
Normal
-0.2
344
Normal
-0.2
393
Tumor
-0.2
444
Normal
-0.2
743
Tumor
-0.2
636
Normal
-0.2
341
Tumor
-0.3
917
Tumor
-0.3
433
Tumor
-0.3
427
Tumor
-0.3
425
Tumor
-0.3
573
Tumor
-0.3
1031
Tumor
-0.3
112
Tumor
-0.3
221
Tumor
-0.3
817
Tumor
-0.4
313
Tumor
-0.4
423
Tumor
-0.4
465
Tumor
-0.4
331
Tumor
-0.4
641
Tumor
-0.5
343
Tumor
-0.5
387
Tumor
-0.5
351
Tumor
-0.5
385
Tumor
-0.7
671
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
