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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RDX is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
54.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
49.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
48.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
43.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
42.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
41.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
39.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
39.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
38.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
38.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
37.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
37.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
36.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
36.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
35.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
35.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
35.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
34.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
33.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
33.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
32.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
32.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
32.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
32.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
32.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
31.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
31.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
31.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
30.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
29.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
29.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
29.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
29.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
29.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
29.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
28.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
28.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
28.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
28.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
28.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
27.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
27.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
27.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
26.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
25.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
25.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
24.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
24.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
23.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
23.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
23.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
22.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
22.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
21.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
20.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
19.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
15.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RDX is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.6
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
82.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
68.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
67.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
58.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
57.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
56.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
52.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
50.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
49.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
46.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
42.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
42.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
42.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
42.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
41.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
41.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
40.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
40.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
40.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
40.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
39.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
39.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
38.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
38.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
38.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
38.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
38.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
38.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
37.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
37.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
37.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
36.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
36.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
36.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
35.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
35.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
35.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
35.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
35.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
34.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
34.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
34.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
34.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
33.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
32.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
32.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
32.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
32.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
32.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
32.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
32.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
31.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
31.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
31.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
31.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
31.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
31.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
30.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
30.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
30.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
29.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
29.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
29.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
29.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
28.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
28.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
28.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
28.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
28.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
28.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
28.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
28.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
27.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
27.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
27.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
27.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
27.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
26.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
26.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
26.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
26.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
26.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
26.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
26.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
25.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
25.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
25.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
25.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
25.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
25.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
24.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
24.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
24.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
24.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
23.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
23.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
23.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
22.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
22.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
22.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
21.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
21.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
20.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
20.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
18.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
17.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
15.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
863
Tumor
0.9
513
Tumor
0.6
515
Tumor
0.6
285
Tumor
0.5
482
Normal
0.5
528
Normal
0.5
723
Tumor
0.5
786
Normal
0.4
514
Normal
0.4
824
Normal
0.4
1022
Normal
0.4
868
Normal
0.4
742
Normal
0.4
463
Tumor
0.4
964
Normal
0.4
481
Tumor
0.4
916
Normal
0.4
741
Tumor
0.4
1046
Normal
0.4
518
Normal
0.4
472
Normal
0.4
474
Normal
0.4
1028
Normal
0.4
915
Tumor
0.4
866
Normal
0.4
1043
Tumor
0.4
867
Tumor
0.4
978
Normal
0.4
884
Normal
0.4
212
Normal
0.3
778
Normal
0.3
1014
Normal
0.3
926
Normal
0.3
462
Normal
0.3
484
Normal
0.3
944
Normal
0.3
862
Normal
0.3
756
Normal
0.3
746
Normal
0.3
874
Normal
0.3
1044
Normal
0.3
918
Normal
0.3
1026
Normal
0.3
627
Tumor
0.3
882
Normal
0.3
714
Normal
0.3
228
Normal
0.3
777
Tumor
0.3
952
Normal
0.3
728
Normal
0.3
922
Normal
0.3
416
Normal
0.3
526
Normal
0.3
448
Normal
0.3
914
Normal
0.3
716
Normal
0.3
954
Normal
0.3
1016
Normal
0.3
137
Tumor
0.3
284
Normal
0.3
686
Normal
0.3
436
Normal
0.3
364
Normal
0.3
546
Normal
0.3
864
Normal
0.3
365
Tumor
0.3
356
Normal
0.3
648
Normal
0.3
111
Normal
0.3
912
Normal
0.3
816
Normal
0.3
924
Normal
0.3
616
Normal
0.3
852
Normal
0.3
976
Normal
0.3
1021
Tumor
0.3
738
Normal
0.3
1042
Normal
0.3
958
Normal
0.3
966
Normal
0.2
286
Normal
0.2
432
Normal
0.2
162
Normal
0.2
132
Normal
0.2
938
Normal
0.2
968
Normal
0.2
558
Normal
0.2
818
Normal
0.2
1032
Normal
0.2
461
Tumor
0.2
534
Normal
0.2
982
Normal
0.2
328
Normal
0.2
262
Normal
0.2
568
Normal
0.2
666
Normal
0.2
698
Normal
0.2
478
Normal
0.2
1015
Tumor
0.2
414
Normal
0.2
533
Tumor
0.2
664
Normal
0.2
628
Normal
0.2
425
Tumor
0.2
696
Normal
0.2
685
Tumor
0.2
984
Normal
0.2
412
Normal
0.2
878
Normal
0.2
258
Normal
0.2
272
Normal
0.2
148
Normal
0.2
494
Normal
0.2
925
Tumor
0.2
421
Tumor
0.2
955
Tumor
0.2
136
Normal
0.2
114
Normal
0.2
362
Normal
0.2
721
Tumor
0.2
128
Normal
0.2
956
Normal
0.2
424
Normal
0.2
737
Tumor
0.2
488
Normal
0.2
422
Normal
0.2
536
Normal
0.2
527
Tumor
0.2
858
Normal
0.2
188
Normal
0.2
456
Normal
0.2
222
Normal
0.2
563
Tumor
0.2
661
Tumor
0.2
913
Tumor
0.2
477
Tumor
0.2
538
Normal
0.2
172
Normal
0.2
415
Tumor
0.2
618
Normal
0.2
722
Normal
0.1
663
Tumor
0.1
572
Normal
0.1
428
Normal
0.1
498
Normal
0.1
142
Normal
0.1
517
Tumor
0.1
464
Normal
0.1
426
Normal
0.1
358
Normal
0.1
524
Normal
0.1
218
Normal
0.1
423
Tumor
0.1
977
Tumor
0.1
492
Normal
0.1
434
Normal
0.1
516
Normal
0.1
923
Tumor
0.1
468
Normal
0.1
861
Tumor
0.1
466
Normal
0.1
413
Tumor
0.1
232
Normal
0.1
554
Normal
0.1
376
Normal
0.1
642
Normal
0.1
647
Tumor
0.1
131
Tumor
0.1
662
Normal
0.1
126
Normal
0.1
557
Tumor
0.1
366
Normal
0.1
224
Normal
0.1
363
Tumor
0.1
981
Tumor
0.1
386
Normal
0.1
455
Tumor
0.1
298
Normal
0.1
314
Normal
0.1
615
Tumor
0.1
431
Tumor
0.1
312
Normal
0.1
444
Normal
0.1
196
Normal
0.1
268
Normal
0.1
921
Tumor
0.1
523
Tumor
0.1
553
Tumor
0.1
1031
Tumor
0.1
1025
Tumor
0.1
483
Tumor
0.1
564
Normal
0.1
396
Normal
0.1
1027
Tumor
0.1
392
Normal
0.0
525
Tumor
0.0
352
Normal
0.0
138
Normal
0.0
574
Normal
0.0
785
Tumor
0.0
911
Tumor
0.0
823
Tumor
0.0
353
Tumor
0.0
344
Normal
0.0
394
Normal
0.0
473
Tumor
0.0
327
Tumor
0.0
471
Tumor
0.0
146
Normal
0.0
745
Tumor
0.0
367
Tumor
0.0
214
Normal
0.0
635
Tumor
0.0
443
Tumor
0.0
446
Normal
0.0
1041
Tumor
0.0
755
Tumor
0.0
672
Normal
0.0
493
Tumor
0.0
368
Normal
0.0
452
Normal
0.0
332
Normal
0.0
967
Tumor
0.0
278
Normal
0.0
744
Normal
0.0
445
Tumor
0.0
141
Tumor
0.0
917
Tumor
0.0
221
Tumor
0.0
636
Normal
0.0
342
Normal
0.0
465
Tumor
0.0
617
Tumor
0.0
283
Tumor
-0.1
447
Tumor
-0.1
881
Tumor
-0.1
192
Normal
-0.1
185
Tumor
-0.1
195
Tumor
-0.1
975
Tumor
-0.1
186
Normal
-0.1
217
Tumor
-0.1
665
Tumor
-0.1
354
Normal
-0.1
388
Normal
-0.1
124
Normal
-0.1
857
Tumor
-0.1
451
Tumor
-0.1
433
Tumor
-0.1
537
Tumor
-0.1
271
Tumor
-0.1
487
Tumor
-0.1
384
Normal
-0.1
697
Tumor
-0.1
545
Tumor
-0.1
161
Tumor
-0.1
814
Normal
-0.1
355
Tumor
-0.1
957
Tumor
-0.1
213
Tumor
-0.2
1013
Tumor
-0.2
277
Tumor
-0.2
387
Tumor
-0.2
127
Tumor
-0.2
715
Tumor
-0.2
113
Tumor
-0.2
724
Normal
-0.2
1045
Tumor
-0.2
261
Tumor
-0.2
361
Tumor
-0.2
953
Tumor
-0.2
187
Tumor
-0.2
311
Tumor
-0.2
297
Tumor
-0.2
497
Tumor
-0.2
171
Tumor
-0.2
943
Tumor
-0.2
817
Tumor
-0.3
963
Tumor
-0.3
713
Tumor
-0.3
211
Tumor
-0.3
573
Tumor
-0.3
427
Tumor
-0.3
257
Tumor
-0.3
535
Tumor
-0.3
145
Tumor
-0.3
983
Tumor
-0.3
467
Tumor
-0.3
223
Tumor
-0.3
491
Tumor
-0.3
813
Tumor
-0.3
375
Tumor
-0.3
267
Tumor
-0.3
343
Tumor
-0.3
231
Tumor
-0.3
125
Tumor
-0.3
851
Tumor
-0.3
147
Tumor
-0.3
341
Tumor
-0.3
873
Tumor
-0.4
383
Tumor
-0.4
641
Tumor
-0.4
695
Tumor
-0.4
395
Tumor
-0.4
331
Tumor
-0.4
135
Tumor
-0.4
727
Tumor
-0.4
883
Tumor
-0.4
112
Tumor
-0.5
965
Tumor
-0.5
391
Tumor
-0.5
671
Tumor
-0.5
567
Tumor
-0.5
937
Tumor
-0.5
191
Tumor
-0.5
815
Tumor
-0.5
357
Tumor
-0.6
351
Tumor
-0.6
393
Tumor
-0.6
865
Tumor
-0.6
877
Tumor
-0.6
951
Tumor
-0.7
571
Tumor
-0.7
743
Tumor
-0.8
227
Tumor
-0.8
435
Tumor
-0.8
313
Tumor
-0.8
123
Tumor
-0.8
385
Tumor
-0.9
411
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
