MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.4 nTPM
HPA Brain:39.4 nTPM
GTEx:51.4 nTPM
FANTOM5:98.5 Scaled Tags Per Million
Pig:30.3 nTPM
Mouse:7.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 39.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.2
2019 Male, age 18, unknown 36.9
2586 Male, age 75, left hemisphere 36.0
2828 Female, age 72, unknown 34.5
2666 Male, age 74, left hemisphere 29.1
2411 Female, age 72, unknown 27.4
1833 Male, age 53, unknown 26.3
1827 Male, age 72, unknown 26.1
1870 Female, age 42, unknown 24.7
1830 Male, age 51, unknown 21.7
2219 Male, age 76, both hemispheres 19.1
Dorsal raphe nucleus
nTPM: 35.2
2298 Female, age 72, unknown 44.4
1828 Male, age 53, unknown 44.2
2016 Female, age 72, unknown 38.2
2047 Male, age 72, unknown 31.7
2750 Male, age 76, both hemispheres 17.5
Inferior colliculus
nTPM: 35.5
2097 Female, age 72, unknown 47.0
1848 Female, age 42, unknown 35.9
1890 Male, age 53, unknown 34.1
2849 Male, age 72, unknown 24.9
Median raphe nucleus
nTPM: 15.8
2220 Male, age 76, midline 15.8
Periaquaductal grey, anterior
nTPM: 28.2
1947 Male, age 18, unknown 30.4
2502 Female, age 75, unknown 27.4
1795 Male, age 51, unknown 26.8
Periaquaductal grey, dorsal
nTPM: 32.3
1840 Male, age 53, unknown 33.9
2850 Male, age 76, both hemispheres 33.0
2464 Female, age 72, unknown 32.0
1831 Male, age 72, unknown 30.2
Periaquaductal grey, lateral
nTPM: 27.3
2053 Male, age 18, unknown 28.8
2140 Male, age 76, both hemispheres 27.9
2272 Male, age 74, both hemispheres 25.2
Pretectal area
nTPM: 33.1
1817 Female, age 42, unknown 46.8
2273 Male, age 74, both hemispheres 40.8
1944 Female, age 72, unknown 40.4
1815 Male, age 53, unknown 37.2
2667 Female, age 75, unknown 36.9
1816 Male, age 51, unknown 35.8
2007 Male, age 72, unknown 34.1
2224 Female, age 72, unknown 31.2
2316 Male, age 76, right hemisphere 22.1
2825 Male, age 18, unknown 19.7
2407 Male, age 75, both hemispheres 18.7
Red nucleus
nTPM: 32.9
1821 Female, age 72, unknown 46.8
2503 Female, age 72, unknown 43.5
2725 Female, age 75, unknown 39.1
1954 Female, age 42, unknown 34.9
2785 Male, age 18, unknown 33.6
1865 Male, age 51, unknown 32.9
2588 Male, age 74, left hemisphere 32.1
1904 Male, age 53, unknown 29.2
2823 Male, age 76, right hemisphere 29.0
2769 Male, age 72, unknown 28.6
2227 Male, age 72, unknown 28.1
2584 Male, age 75, left hemisphere 16.6
Substantia nigra
nTPM: 39.4
1916 Female, age 42, unknown 60.6
2241 Male, age 72, unknown 55.8
1851 Male, age 51, unknown 46.7
1889 Female, age 72, unknown 44.3
2699 Male, age 18, unknown 44.3
1941 Male, age 53, unknown 33.5
2409 Female, age 72, unknown 32.0
2583 Male, age 75, right hemisphere 28.9
2665 Male, age 74, both hemispheres 24.9
2590 Female, age 75, unknown 23.5
Superior colliculus
nTPM: 29.2
1995 Male, age 72, unknown 37.9
2087 Female, age 72, unknown 34.8
2587 Male, age 74, left hemisphere 33.5
2668 Female, age 75, unknown 33.2
1796 Male, age 53, unknown 28.2
1839 Male, age 51, unknown 27.5
2664 Male, age 75, both hemispheres 27.3
2261 Male, age 18, unknown 24.5
1913 Female, age 42, unknown 24.4
1895 Male, age 76, right hemisphere 20.6
Ventral tegmental area
nTPM: 32.2
2410 Female, age 72, unknown 47.2
1915 Female, age 42, unknown 43.7
1942 Male, age 51, unknown 29.6
2218 Male, age 76, both hemispheres 28.0
2021 Male, age 53, unknown 25.2
2223 Female, age 72, unknown 19.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 51.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.4
Samples: 139

Max nTPM: 142.0
Min nTPM: 19.7
Std nTPM: 23.2
Median nTPM: 46.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 142.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 139.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 137.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 121.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 117.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 111.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 108.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 107.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 103.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 100.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 84.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 98.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 98.5
FF:10158-103A5 76 years, female 98.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 30.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.3
Samples: 4

Max nTPM: 36.4
Min nTPM: 22.8
Sample A Female 36.4
Sample B Female 22.8
Sample C Male 29.5
Sample D Male 32.5
Midbrain
nTPM: 24.4
Samples: 4

Max nTPM: 35.8
Min nTPM: 18.3
Sample A Female 35.8
Sample B Female 24.7
Sample C Male 18.6
Sample D Male 18.3
Periaqueductal gray
nTPM: 28.1
Samples: 3

Max nTPM: 33.0
Min nTPM: 23.0
Sample B Female 23.0
Sample C Male 33.0
Sample D Male 28.2
Superior colliculi
nTPM: 20.4
Samples: 4

Max nTPM: 26.2
Min nTPM: 13.6
Sample A Female 26.2
Sample B Female 13.6
Sample C Male 19.0
Sample D Male 22.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.1
Samples: 4

Max nTPM: 7.4
Min nTPM: 6.5
Sample A Male 7.4
Sample B Male 6.5
Sample C Female 7.2
Sample D Female 7.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69014518 Antisense, RP_050310_01_C05, Mouse strain C57BL/6J (56 days, male) 0.1
74819671 Antisense, RP_060315_02_G10, Mouse strain C57BL/6J (56 days, male) 0.1

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