MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.2 nTPM
HPA Brain:28.5 nTPM
GTEx:7.2 nTPM
FANTOM5:9.8 Scaled Tags Per Million
Pig:23.7 nTPM
Mouse:6.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 28.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.5
2666 Male, age 74, left hemisphere 22.7
2019 Male, age 18, unknown 21.6
1870 Female, age 42, unknown 21.2
2411 Female, age 72, unknown 21.2
1833 Male, age 53, unknown 21.0
1827 Male, age 72, unknown 19.4
1830 Male, age 51, unknown 18.2
2219 Male, age 76, both hemispheres 16.9
2586 Male, age 75, left hemisphere 16.6
2828 Female, age 72, unknown 16.5
Dorsal raphe nucleus
nTPM: 25.5
2298 Female, age 72, unknown 29.6
2016 Female, age 72, unknown 28.0
1828 Male, age 53, unknown 27.3
2047 Male, age 72, unknown 23.4
2750 Male, age 76, both hemispheres 19.1
Inferior colliculus
nTPM: 27.0
2849 Male, age 72, unknown 29.1
1848 Female, age 42, unknown 27.5
1890 Male, age 53, unknown 26.3
2097 Female, age 72, unknown 25.3
Median raphe nucleus
nTPM: 24.3
2220 Male, age 76, midline 24.3
Periaquaductal grey, anterior
nTPM: 21.6
2502 Female, age 75, unknown 24.2
1947 Male, age 18, unknown 21.9
1795 Male, age 51, unknown 18.8
Periaquaductal grey, dorsal
nTPM: 28.5
2850 Male, age 76, both hemispheres 35.1
1840 Male, age 53, unknown 30.8
2464 Female, age 72, unknown 24.2
1831 Male, age 72, unknown 23.9
Periaquaductal grey, lateral
nTPM: 27.9
2272 Male, age 74, both hemispheres 32.4
2140 Male, age 76, both hemispheres 29.5
2053 Male, age 18, unknown 22.0
Pretectal area
nTPM: 23.5
2273 Male, age 74, both hemispheres 33.1
1944 Female, age 72, unknown 25.6
2224 Female, age 72, unknown 25.6
1816 Male, age 51, unknown 24.2
2007 Male, age 72, unknown 24.1
2825 Male, age 18, unknown 23.0
1817 Female, age 42, unknown 22.4
2667 Female, age 75, unknown 20.8
2316 Male, age 76, right hemisphere 20.7
1815 Male, age 53, unknown 20.5
2407 Male, age 75, both hemispheres 18.2
Red nucleus
nTPM: 17.0
2785 Male, age 18, unknown 19.9
2725 Female, age 75, unknown 18.6
1821 Female, age 72, unknown 18.2
2503 Female, age 72, unknown 18.2
2769 Male, age 72, unknown 17.5
2584 Male, age 75, left hemisphere 17.3
2227 Male, age 72, unknown 17.1
2823 Male, age 76, right hemisphere 16.4
2588 Male, age 74, left hemisphere 16.2
1954 Female, age 42, unknown 15.3
1865 Male, age 51, unknown 15.0
1904 Male, age 53, unknown 14.3
Substantia nigra
nTPM: 21.9
2241 Male, age 72, unknown 30.2
1941 Male, age 53, unknown 23.1
1851 Male, age 51, unknown 22.8
1889 Female, age 72, unknown 21.9
1916 Female, age 42, unknown 21.7
2409 Female, age 72, unknown 21.4
2699 Male, age 18, unknown 21.3
2665 Male, age 74, both hemispheres 21.0
2590 Female, age 75, unknown 19.6
2583 Male, age 75, right hemisphere 16.1
Superior colliculus
nTPM: 20.4
2587 Male, age 74, left hemisphere 24.2
1895 Male, age 76, right hemisphere 23.9
1839 Male, age 51, unknown 22.1
2087 Female, age 72, unknown 21.3
1796 Male, age 53, unknown 20.7
2668 Female, age 75, unknown 20.2
2664 Male, age 75, both hemispheres 20.0
2261 Male, age 18, unknown 19.6
1913 Female, age 42, unknown 16.3
1995 Male, age 72, unknown 15.7
Ventral tegmental area
nTPM: 22.1
1942 Male, age 51, unknown 25.3
1915 Female, age 42, unknown 24.7
2021 Male, age 53, unknown 21.5
2218 Male, age 76, both hemispheres 21.2
2223 Female, age 72, unknown 20.9
2410 Female, age 72, unknown 19.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 7.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.2
Samples: 139

Max nTPM: 16.6
Min nTPM: 2.3
Std nTPM: 2.2
Median nTPM: 6.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 16.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 14.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 13.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 12.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 11.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 11.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 10.8
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 10.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 10.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 10.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 10.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 9.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.8
FF:10158-103A5 76 years, female 9.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 23.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.1
Samples: 4

Max nTPM: 20.1
Min nTPM: 14.3
Sample A Female 20.1
Sample B Female 15.7
Sample C Male 18.2
Sample D Male 14.3
Midbrain
nTPM: 18.2
Samples: 4

Max nTPM: 20.4
Min nTPM: 14.4
Sample A Female 14.4
Sample B Female 19.7
Sample C Male 18.3
Sample D Male 20.4
Periaqueductal gray
nTPM: 23.7
Samples: 3

Max nTPM: 25.4
Min nTPM: 21.8
Sample B Female 21.8
Sample C Male 25.4
Sample D Male 23.8
Superior colliculi
nTPM: 19.9
Samples: 4

Max nTPM: 20.6
Min nTPM: 18.8
Sample A Female 20.2
Sample B Female 20.1
Sample C Male 20.6
Sample D Male 18.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.9
Samples: 4

Max nTPM: 7.9
Min nTPM: 6.2
Sample A Male 6.2
Sample B Male 7.0
Sample C Female 7.9
Sample D Female 6.3

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