We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TUBB2A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
72.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
322.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
321.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
311.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
307.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
297.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
278.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
273.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
268.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
264.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
260.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
246.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
240.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
216.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
214.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
214.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
213.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
199.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
193.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
186.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
186.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
185.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
172.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
172.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
171.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
169.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
169.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
167.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
165.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
163.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
157.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
155.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
155.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
154.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
152.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
151.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
151.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
149.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
149.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
148.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
144.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
134.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
132.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
132.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
130.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
129.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
129.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
127.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
127.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
126.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
123.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
122.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
122.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
121.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
119.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
119.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
118.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
117.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
116.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
116.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
116.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
116.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
115.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
115.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
113.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
112.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
112.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
112.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
112.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
111.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
111.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
110.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
109.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
108.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
107.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
106.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
106.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
106.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
106.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
104.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
102.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
102.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
102.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
100.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
99.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
98.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
97.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
97.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
97.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
95.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
95.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
94.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
94.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
94.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
94.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
93.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
93.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
93.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
92.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
92.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
92.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
91.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
91.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
91.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
87.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
87.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
86.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
86.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
86.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
85.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
84.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
84.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
83.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
83.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
82.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
82.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
82.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
81.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
81.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
79.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
78.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
77.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
76.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
76.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
75.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
75.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
75.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
74.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
73.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
73.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
72.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
71.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
71.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
71.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
71.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
71.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
70.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
70.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
70.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
69.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
69.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
68.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
67.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
67.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
67.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
67.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
66.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
66.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
66.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
66.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
65.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
65.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
65.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
65.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
64.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
64.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
64.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
64.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
63.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
63.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
63.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
63.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
63.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
63.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
62.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
62.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
62.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
62.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
61.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
61.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
61.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
61.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
61.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
60.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
59.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
59.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
59.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
58.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
58.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
58.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
58.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
57.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
56.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
56.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
56.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
56.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
56.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
55.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
55.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
54.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
54.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
53.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
53.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
52.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
52.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
52.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
52.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
51.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
51.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
51.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
50.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
50.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
50.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
50.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
50.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
50.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
49.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
49.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
48.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
48.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
47.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
47.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
47.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
46.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
45.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
45.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
45.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
45.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
45.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
44.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
44.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
44.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
43.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
43.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
43.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
43.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
42.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
42.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
42.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
42.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
42.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
41.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
40.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
40.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
40.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
40.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
40.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
40.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
40.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
40.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
40.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
39.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
39.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
38.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
38.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
38.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
38.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
38.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
38.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
37.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
37.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
37.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
37.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
36.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
36.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
35.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
35.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
35.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
35.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
34.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
34.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
33.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
33.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
33.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
33.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
33.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
33.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
32.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
32.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
32.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
32.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
32.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
31.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
31.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
31.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
31.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
30.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
30.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
30.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
29.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
29.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
28.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
28.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
28.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
27.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
27.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
27.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
26.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
26.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
26.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
26.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
26.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
25.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
25.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
25.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
25.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
25.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
25.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
25.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
24.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
24.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
24.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
24.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
24.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
23.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
23.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
22.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
22.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
21.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
21.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
13.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TUBB2A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.4
Number of samples
231
Samples
Sample
Description
TPM
DO45199
0 years, female, NA, stage:2, alive, 1350 days
87.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
81.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
79.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
58.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
57.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
54.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
52.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
51.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
50.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
44.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
43.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
42.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
41.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
39.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
38.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
36.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
36.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
36.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
35.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
35.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
33.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
33.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
32.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
31.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
31.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
30.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
30.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
30.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
29.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
29.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
29.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
29.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
28.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
28.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
28.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
27.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
27.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
26.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
26.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
26.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
26.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
26.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
25.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
25.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
25.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
25.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
25.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
25.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
25.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
24.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
24.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
24.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
23.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
23.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
22.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
22.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
22.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
21.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
20.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
18.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
17.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
3.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
3.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
125
Tumor
0.6
463
Tumor
0.6
351
Tumor
0.5
161
Tumor
0.5
277
Tumor
0.4
663
Tumor
0.4
365
Tumor
0.4
135
Tumor
0.4
661
Tumor
0.4
313
Tumor
0.4
171
Tumor
0.4
123
Tumor
0.3
343
Tumor
0.3
627
Tumor
0.3
427
Tumor
0.3
567
Tumor
0.3
385
Tumor
0.3
231
Tumor
0.3
375
Tumor
0.3
444
Normal
0.3
615
Tumor
0.3
815
Tumor
0.2
813
Tumor
0.2
195
Tumor
0.2
222
Normal
0.2
435
Tumor
0.2
414
Normal
0.2
743
Tumor
0.2
341
Tumor
0.2
185
Tumor
0.2
671
Tumor
0.2
141
Tumor
0.2
217
Tumor
0.2
127
Tumor
0.2
331
Tumor
0.2
192
Normal
0.2
391
Tumor
0.2
221
Tumor
0.2
112
Tumor
0.2
445
Tumor
0.2
257
Tumor
0.2
353
Tumor
0.2
147
Tumor
0.2
432
Normal
0.2
395
Tumor
0.2
367
Tumor
0.2
394
Normal
0.2
272
Normal
0.2
271
Tumor
0.2
283
Tumor
0.2
267
Tumor
0.2
297
Tumor
0.2
424
Normal
0.2
443
Tumor
0.2
467
Tumor
0.2
268
Normal
0.2
188
Normal
0.2
278
Normal
0.2
451
Tumor
0.2
436
Normal
0.1
464
Normal
0.1
393
Tumor
0.1
386
Normal
0.1
777
Tumor
0.1
191
Tumor
0.1
434
Normal
0.1
455
Tumor
0.1
745
Tumor
0.1
413
Tumor
0.1
387
Tumor
0.1
186
Normal
0.1
428
Normal
0.1
563
Tumor
0.1
617
Tumor
0.1
814
Normal
0.1
126
Normal
0.1
137
Tumor
0.1
136
Normal
0.1
145
Tumor
0.1
423
Tumor
0.1
411
Tumor
0.1
456
Normal
0.1
132
Normal
0.1
148
Normal
0.1
425
Tumor
0.1
124
Normal
0.1
358
Normal
0.1
213
Tumor
0.1
383
Tumor
0.1
312
Normal
0.1
431
Tumor
0.1
223
Tumor
0.1
452
Normal
0.1
162
Normal
0.1
421
Tumor
0.1
113
Tumor
0.1
314
Normal
0.1
111
Normal
0.1
641
Tumor
0.1
468
Normal
0.1
446
Normal
0.1
172
Normal
0.1
648
Normal
0.1
357
Tumor
0.1
196
Normal
0.1
911
Tumor
0.1
361
Tumor
0.1
258
Normal
0.1
388
Normal
0.1
422
Normal
0.1
465
Tumor
0.1
741
Tumor
0.1
983
Tumor
0.1
574
Normal
0.1
262
Normal
0.1
332
Normal
0.1
571
Tumor
0.1
344
Normal
0.1
187
Tumor
0.1
138
Normal
0.1
396
Normal
0.1
354
Normal
0.1
666
Normal
0.1
881
Tumor
0.1
366
Normal
0.1
368
Normal
0.1
863
Tumor
0.1
426
Normal
0.1
665
Tumor
0.1
114
Normal
0.1
662
Normal
0.1
285
Tumor
0.1
384
Normal
0.1
342
Normal
0.1
817
Tumor
0.0
664
Normal
0.0
564
Normal
0.0
724
Normal
0.0
433
Tumor
0.0
737
Tumor
0.0
515
Tumor
0.0
362
Normal
0.0
376
Normal
0.0
635
Tumor
0.0
925
Tumor
0.0
214
Normal
0.0
461
Tumor
0.0
913
Tumor
0.0
642
Normal
0.0
618
Normal
0.0
218
Normal
0.0
352
Normal
0.0
786
Normal
0.0
392
Normal
0.0
311
Tumor
0.0
568
Normal
0.0
298
Normal
0.0
868
Normal
0.0
146
Normal
0.0
744
Normal
0.0
573
Tumor
0.0
877
Tumor
0.0
628
Normal
0.0
128
Normal
0.0
497
Tumor
0.0
462
Normal
0.0
286
Normal
0.0
824
Normal
0.0
224
Normal
0.0
232
Normal
0.0
851
Tumor
0.0
557
Tumor
0.0
921
Tumor
0.0
873
Tumor
0.0
742
Normal
0.0
447
Tumor
0.0
884
Normal
-0.1
647
Tumor
-0.1
466
Normal
-0.1
636
Normal
-0.1
746
Normal
-0.1
914
Normal
-0.1
937
Tumor
-0.1
738
Normal
-0.1
1015
Tumor
-0.1
943
Tumor
-0.1
878
Normal
-0.1
1016
Normal
-0.1
874
Normal
-0.1
363
Tumor
-0.1
672
Normal
-0.1
858
Normal
-0.1
883
Tumor
-0.1
977
Tumor
-0.1
227
Tumor
-0.1
713
Tumor
-0.1
491
Tumor
-0.1
284
Normal
-0.1
616
Normal
-0.1
816
Normal
-0.1
882
Normal
-0.1
727
Tumor
-0.1
572
Normal
-0.1
356
Normal
-0.1
866
Normal
-0.1
558
Normal
-0.1
865
Tumor
-0.1
982
Normal
-0.1
416
Normal
-0.2
857
Tumor
-0.2
867
Tumor
-0.2
327
Tumor
-0.2
912
Normal
-0.2
778
Normal
-0.2
228
Normal
-0.2
537
Tumor
-0.2
818
Normal
-0.2
722
Normal
-0.2
916
Normal
-0.2
755
Tumor
-0.2
984
Normal
-0.2
721
Tumor
-0.2
523
Tumor
-0.2
728
Normal
-0.2
952
Normal
-0.2
923
Tumor
-0.2
472
Normal
-0.2
864
Normal
-0.2
482
Normal
-0.2
955
Tumor
-0.2
1013
Tumor
-0.2
723
Tumor
-0.2
528
Normal
-0.2
1021
Tumor
-0.2
978
Normal
-0.2
261
Tumor
-0.2
1027
Tumor
-0.2
695
Tumor
-0.2
525
Tumor
-0.2
1044
Normal
-0.2
487
Tumor
-0.2
975
Tumor
-0.2
545
Tumor
-0.2
474
Normal
-0.2
714
Normal
-0.2
1045
Tumor
-0.2
823
Tumor
-0.3
938
Normal
-0.3
1028
Normal
-0.3
142
Normal
-0.3
212
Normal
-0.3
534
Normal
-0.3
518
Normal
-0.3
1043
Tumor
-0.3
513
Tumor
-0.3
527
Tumor
-0.3
963
Tumor
-0.3
852
Normal
-0.3
861
Tumor
-0.3
917
Tumor
-0.3
966
Normal
-0.3
862
Normal
-0.3
1026
Normal
-0.3
785
Tumor
-0.3
364
Normal
-0.3
685
Tumor
-0.3
976
Normal
-0.3
926
Normal
-0.3
538
Normal
-0.3
478
Normal
-0.3
1022
Normal
-0.3
546
Normal
-0.3
953
Tumor
-0.3
715
Tumor
-0.3
492
Normal
-0.3
756
Normal
-0.3
967
Tumor
-0.3
965
Tumor
-0.3
1014
Normal
-0.3
477
Tumor
-0.3
481
Tumor
-0.3
488
Normal
-0.3
964
Normal
-0.3
498
Normal
-0.3
526
Normal
-0.3
918
Normal
-0.3
471
Tumor
-0.3
944
Normal
-0.3
956
Normal
-0.3
968
Normal
-0.3
954
Normal
-0.3
493
Tumor
-0.3
716
Normal
-0.3
1025
Tumor
-0.4
951
Tumor
-0.4
483
Tumor
-0.4
1042
Normal
-0.4
412
Normal
-0.4
328
Normal
-0.4
535
Tumor
-0.4
131
Tumor
-0.4
696
Normal
-0.4
1046
Normal
-0.4
1032
Normal
-0.4
1041
Tumor
-0.4
554
Normal
-0.4
514
Normal
-0.4
211
Tumor
-0.4
536
Normal
-0.4
533
Tumor
-0.4
698
Normal
-0.4
494
Normal
-0.4
686
Normal
-0.4
448
Normal
-0.4
415
Tumor
-0.4
922
Normal
-0.4
484
Normal
-0.4
516
Normal
-0.4
915
Tumor
-0.4
355
Tumor
-0.4
957
Tumor
-0.4
697
Tumor
-0.5
924
Normal
-0.5
981
Tumor
-0.5
517
Tumor
-0.5
958
Normal
-0.5
553
Tumor
-0.5
524
Normal
-0.5
1031
Tumor
-0.6
473
Tumor
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
