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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TINAG is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
79.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
59.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
53.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
46.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
44.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
44.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
39.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
36.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
35.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
28.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
27.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
26.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
24.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
23.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
20.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
19.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
5.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TINAG is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.5
Number of samples
231
Samples
Sample
Description
TPM
DO23510
0 years, female, NA, stage:2, alive, 870 days
43.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
38.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
34.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
32.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
25.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
24.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
18.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
6.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
3.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
2.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
2.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
1.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
1.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
1.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
1.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
1.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
913
Tumor
4.3
413
Tumor
3.2
267
Tumor
2.9
925
Tumor
2.7
567
Tumor
2.3
383
Tumor
2.2
367
Tumor
2.0
145
Tumor
1.9
395
Tumor
1.8
137
Tumor
1.7
525
Tumor
1.6
493
Tumor
1.4
285
Tumor
1.4
311
Tumor
1.3
563
Tumor
1.2
387
Tumor
1.1
533
Tumor
0.8
391
Tumor
0.8
965
Tumor
0.7
427
Tumor
0.7
926
Normal
0.7
494
Normal
0.6
487
Tumor
0.6
573
Tumor
0.5
883
Tumor
0.5
537
Tumor
0.5
414
Normal
0.5
527
Tumor
0.4
957
Tumor
0.4
141
Tumor
0.3
498
Normal
0.2
277
Tumor
0.1
963
Tumor
0.1
967
Tumor
0.1
484
Normal
0.1
297
Tumor
0.1
483
Tumor
0.1
132
Normal
0.1
135
Tumor
0.0
911
Tumor
0.0
918
Normal
0.0
422
Normal
0.0
314
Normal
0.0
923
Tumor
0.0
384
Normal
0.0
912
Normal
0.0
488
Normal
0.0
138
Normal
-0.1
877
Tumor
-0.1
396
Normal
-0.1
142
Normal
-0.1
976
Normal
-0.2
964
Normal
-0.2
278
Normal
-0.2
136
Normal
-0.2
882
Normal
-0.2
331
Tumor
-0.2
914
Normal
-0.2
332
Normal
-0.2
298
Normal
-0.2
146
Normal
-0.3
916
Normal
-0.3
975
Tumor
-0.3
424
Normal
-0.3
917
Tumor
-0.3
492
Normal
-0.3
366
Normal
-0.3
966
Normal
-0.4
365
Tumor
-0.4
426
Normal
-0.4
884
Normal
-0.4
312
Normal
-0.4
376
Normal
-0.4
924
Normal
-0.4
428
Normal
-0.5
568
Normal
-0.5
375
Tumor
-0.6
878
Normal
-0.6
564
Normal
-0.6
393
Tumor
-0.6
922
Normal
-0.6
915
Tumor
-0.6
361
Tumor
-0.6
881
Tumor
-0.7
368
Normal
-0.7
968
Normal
-0.7
546
Normal
-0.7
958
Normal
-0.7
362
Normal
-0.8
572
Normal
-0.8
131
Tumor
-0.8
392
Normal
-0.8
921
Tumor
-0.8
534
Normal
-0.8
574
Normal
-0.8
394
Normal
-0.8
224
Normal
-0.9
538
Normal
-0.9
423
Tumor
-0.9
528
Normal
-0.9
386
Normal
-0.9
558
Normal
-0.9
313
Tumor
-1.0
284
Normal
-1.0
385
Tumor
-1.0
388
Normal
-1.0
491
Tumor
-1.1
228
Normal
-1.2
497
Tumor
-1.3
545
Tumor
-1.3
223
Tumor
-1.3
283
Tumor
-1.3
425
Tumor
-1.3
557
Tumor
-1.3
553
Tumor
-1.3
272
Normal
-1.3
554
Normal
-1.4
232
Normal
-1.4
262
Normal
-1.4
268
Normal
-1.5
212
Normal
-1.5
261
Tumor
-1.5
286
Normal
-1.6
516
Normal
-1.6
227
Tumor
-1.6
271
Tumor
-1.7
421
Tumor
-1.7
524
Normal
-1.7
258
Normal
-1.7
231
Tumor
-1.7
523
Tumor
-1.8
517
Tumor
-1.8
257
Tumor
-1.8
211
Tumor
-1.9
571
Tumor
-1.9
514
Normal
-2.0
518
Normal
-2.1
515
Tumor
-2.1
513
Tumor
-2.2
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
722
Normal
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
755
Tumor
N/A
635
Tumor
N/A
756
Normal
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
526
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
785
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
666
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
433
Tumor
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
447
Tumor
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
344
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
