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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CNPY3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
56.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
297.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
252.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
231.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
214.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
185.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
178.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
170.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
169.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
146.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
142.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
129.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
128.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
128.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
127.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
123.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
122.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
122.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
122.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
121.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
119.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
117.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
116.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
115.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
115.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
113.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
113.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
111.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
111.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
110.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
109.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
104.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
104.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
103.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
102.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
101.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
98.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
97.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
95.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
95.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
94.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
94.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
93.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
93.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
93.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
92.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
91.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
91.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
90.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
90.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
90.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
90.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
90.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
89.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
89.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
89.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
88.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
87.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
85.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
85.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
84.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
83.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
82.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
82.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
80.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
79.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
78.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
78.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
78.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
78.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
77.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
77.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
76.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
76.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
76.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
75.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
74.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
73.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
73.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
73.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
72.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
72.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
72.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
72.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
72.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
71.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
70.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
69.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
69.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
68.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
68.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
68.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
67.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
67.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
66.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
66.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
66.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
66.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
65.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
64.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
64.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
63.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
63.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
63.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
63.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
63.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
63.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
63.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
61.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
61.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
61.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
61.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
61.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
60.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
60.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
60.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
60.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
60.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
59.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
59.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
59.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
59.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
58.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
58.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
58.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
58.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
57.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
57.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
57.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
57.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
57.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
57.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
57.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
57.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
57.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
56.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
56.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
55.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
55.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
54.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
54.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
54.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
53.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
53.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
53.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
53.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
52.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
52.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
52.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
52.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
52.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
52.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
52.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
51.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
51.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
51.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
51.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
51.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
51.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
51.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
51.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
50.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
50.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
50.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
49.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
49.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
49.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
49.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
49.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
49.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
49.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
48.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
48.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
48.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
48.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
48.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
48.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
48.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
47.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
47.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
47.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
47.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
47.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
47.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
47.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
47.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
47.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
47.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
47.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
47.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
46.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
46.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
46.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
46.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
46.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
46.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
45.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
45.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
45.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
44.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
44.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
44.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
44.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
44.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
44.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
44.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
43.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
43.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
43.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
43.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
43.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
42.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
42.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
42.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
42.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
42.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
42.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
41.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
41.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
41.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
40.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
40.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
40.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
40.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
40.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
40.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
40.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
39.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
39.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
39.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
39.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
39.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
39.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
39.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
39.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
39.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
39.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
39.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
39.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
38.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
38.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
38.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
38.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
38.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
38.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
38.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
38.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
38.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
38.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
37.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
37.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
37.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
37.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
36.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
36.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
36.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
36.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
36.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
36.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
35.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
35.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
35.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
35.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
35.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
34.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
34.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
34.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
34.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
33.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
33.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
33.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
33.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
33.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
33.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
33.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
32.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
32.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
32.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
32.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
32.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
32.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
32.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
31.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
31.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
31.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
31.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
31.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
30.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
30.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
30.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
30.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
30.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
30.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
30.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
30.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
30.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
30.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
29.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
29.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
29.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
28.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
28.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
28.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
28.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
28.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
28.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
28.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
28.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
27.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
27.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
27.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
27.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
26.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
26.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
26.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
26.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
25.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
25.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
25.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
25.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
25.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
24.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
24.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
24.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
24.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
24.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
24.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
24.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
24.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
23.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
23.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
23.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
22.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
22.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
22.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
19.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
18.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
16.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CNPY3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.3
Number of samples
231
Samples
Sample
Description
TPM
DO50814
0 years, male, NA, stage:3, alive, 420 days
230.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
160.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
154.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
135.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
113.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
108.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
94.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
85.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
79.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
78.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
75.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
72.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
71.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
71.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
69.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
69.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
64.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
63.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
62.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
62.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
61.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
61.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
60.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
58.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
57.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
56.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
53.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
53.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
52.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
52.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
52.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
52.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
52.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
51.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
51.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
51.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
50.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
50.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
50.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
50.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
48.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
46.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
46.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
46.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
45.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
44.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
44.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
44.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
44.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
44.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
44.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
42.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
41.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
41.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
40.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
40.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
40.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
40.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
39.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
38.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
38.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
38.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
38.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
38.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
37.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
37.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
37.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
37.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
37.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
37.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
37.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
37.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
37.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
37.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
36.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
36.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
36.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
36.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
36.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
36.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
35.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
35.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
35.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
35.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
35.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
34.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
34.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
34.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
34.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
34.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
33.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
33.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
33.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
32.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
32.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
32.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
32.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
32.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
32.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
31.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
31.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
31.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
31.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
31.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
31.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
30.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
30.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
29.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
29.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
29.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
29.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
29.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
28.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
28.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
28.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
28.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
28.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
28.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
28.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
28.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
28.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
27.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
27.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
27.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
27.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
27.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
27.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
27.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
27.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
26.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
26.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
26.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
25.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
25.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
25.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
25.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
25.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
25.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
25.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
25.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
25.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
25.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
24.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
24.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
24.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
24.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
24.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
24.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
23.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
23.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
23.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
23.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
23.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
23.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
22.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
22.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
22.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
21.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
21.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
21.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
21.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
20.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
20.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
20.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
553
Tumor
2.4
877
Tumor
1.2
227
Tumor
1.1
487
Tumor
1.0
1043
Tumor
1.0
743
Tumor
1.0
1013
Tumor
0.9
744
Normal
0.9
923
Tumor
0.9
554
Normal
0.9
131
Tumor
0.8
695
Tumor
0.8
983
Tumor
0.8
497
Tumor
0.8
351
Tumor
0.7
1027
Tumor
0.7
924
Normal
0.7
445
Tumor
0.7
517
Tumor
0.7
112
Tumor
0.6
1025
Tumor
0.6
342
Normal
0.6
951
Tumor
0.6
727
Tumor
0.6
491
Tumor
0.6
525
Tumor
0.5
411
Tumor
0.5
977
Tumor
0.5
963
Tumor
0.5
488
Normal
0.5
967
Tumor
0.5
1028
Normal
0.5
538
Normal
0.5
1045
Tumor
0.5
357
Tumor
0.5
1014
Normal
0.5
484
Normal
0.5
714
Normal
0.5
686
Normal
0.5
367
Tumor
0.5
697
Tumor
0.5
984
Normal
0.5
698
Normal
0.5
823
Tumor
0.5
524
Normal
0.5
1022
Normal
0.5
473
Tumor
0.5
518
Normal
0.4
481
Tumor
0.4
267
Tumor
0.4
957
Tumor
0.4
344
Normal
0.4
723
Tumor
0.4
536
Normal
0.4
922
Normal
0.4
127
Tumor
0.4
966
Normal
0.4
1031
Tumor
0.4
447
Tumor
0.4
813
Tumor
0.4
861
Tumor
0.4
742
Normal
0.3
883
Tumor
0.3
878
Normal
0.3
343
Tumor
0.3
647
Tumor
0.3
944
Normal
0.3
1026
Normal
0.3
862
Normal
0.3
298
Normal
0.3
815
Tumor
0.3
527
Tumor
0.3
921
Tumor
0.3
1044
Normal
0.3
261
Tumor
0.3
968
Normal
0.3
285
Tumor
0.3
472
Normal
0.3
448
Normal
0.3
218
Normal
0.3
523
Tumor
0.3
355
Tumor
0.2
211
Tumor
0.2
415
Tumor
0.2
738
Normal
0.2
125
Tumor
0.2
716
Normal
0.2
741
Tumor
0.2
492
Normal
0.2
982
Normal
0.2
142
Normal
0.2
1015
Tumor
0.2
128
Normal
0.2
975
Tumor
0.2
958
Normal
0.2
696
Normal
0.2
526
Normal
0.2
313
Tumor
0.2
952
Normal
0.2
857
Tumor
0.2
728
Normal
0.2
478
Normal
0.2
111
Normal
0.2
1032
Normal
0.2
912
Normal
0.2
546
Normal
0.2
498
Normal
0.2
332
Normal
0.2
412
Normal
0.2
545
Tumor
0.2
516
Normal
0.2
331
Tumor
0.1
816
Normal
0.1
938
Normal
0.1
363
Tumor
0.1
376
Normal
0.1
572
Normal
0.1
352
Normal
0.1
722
Normal
0.1
954
Normal
0.1
778
Normal
0.1
493
Tumor
0.1
477
Tumor
0.1
452
Normal
0.1
745
Tumor
0.1
568
Normal
0.1
817
Tumor
0.1
426
Normal
0.1
746
Normal
0.1
937
Tumor
0.1
1046
Normal
0.1
964
Normal
0.1
537
Tumor
0.1
468
Normal
0.1
814
Normal
0.1
494
Normal
0.1
462
Normal
0.1
435
Tumor
0.1
953
Tumor
0.1
636
Normal
0.0
528
Normal
0.0
217
Tumor
0.0
663
Tumor
0.0
431
Tumor
0.0
456
Normal
0.0
956
Normal
0.0
1041
Tumor
0.0
976
Normal
0.0
574
Normal
0.0
818
Normal
0.0
482
Normal
0.0
388
Normal
0.0
852
Normal
0.0
558
Normal
0.0
685
Tumor
0.0
535
Tumor
0.0
391
Tumor
0.0
433
Tumor
0.0
1016
Normal
0.0
917
Tumor
0.0
232
Normal
0.0
943
Tumor
0.0
286
Normal
0.0
1021
Tumor
0.0
978
Normal
0.0
434
Normal
-0.1
737
Tumor
-0.1
228
Normal
-0.1
661
Tumor
-0.1
882
Normal
-0.1
392
Normal
-0.1
721
Tumor
-0.1
914
Normal
-0.1
396
Normal
-0.1
474
Normal
-0.1
915
Tumor
-0.1
858
Normal
-0.1
257
Tumor
-0.1
385
Tumor
-0.1
366
Normal
-0.1
918
Normal
-0.1
466
Normal
-0.1
724
Normal
-0.1
436
Normal
-0.1
573
Tumor
-0.1
271
Tumor
-0.1
358
Normal
-0.1
221
Tumor
-0.1
926
Normal
-0.1
258
Normal
-0.1
916
Normal
-0.1
224
Normal
-0.1
756
Normal
-0.1
384
Normal
-0.1
866
Normal
-0.1
662
Normal
-0.1
671
Tumor
-0.1
283
Tumor
-0.1
327
Tumor
-0.2
364
Normal
-0.2
214
Normal
-0.2
455
Tumor
-0.2
981
Tumor
-0.2
368
Normal
-0.2
564
Normal
-0.2
446
Normal
-0.2
851
Tumor
-0.2
955
Tumor
-0.2
464
Normal
-0.2
375
Tumor
-0.2
824
Normal
-0.2
328
Normal
-0.2
393
Tumor
-0.2
786
Normal
-0.2
755
Tumor
-0.2
867
Tumor
-0.2
212
Normal
-0.2
114
Normal
-0.2
138
Normal
-0.2
148
Normal
-0.2
186
Normal
-0.2
666
Normal
-0.2
362
Normal
-0.2
874
Normal
-0.2
648
Normal
-0.2
514
Normal
-0.2
557
Tumor
-0.2
222
Normal
-0.2
277
Tumor
-0.2
965
Tumor
-0.3
284
Normal
-0.3
865
Tumor
-0.3
715
Tumor
-0.3
213
Tumor
-0.3
416
Normal
-0.3
196
Normal
-0.3
864
Normal
-0.3
534
Normal
-0.3
672
Normal
-0.3
278
Normal
-0.3
311
Tumor
-0.3
386
Normal
-0.3
314
Normal
-0.3
467
Tumor
-0.3
132
Normal
-0.3
642
Normal
-0.3
1042
Normal
-0.3
268
Normal
-0.3
354
Normal
-0.3
262
Normal
-0.3
356
Normal
-0.3
231
Tumor
-0.3
394
Normal
-0.3
146
Normal
-0.3
135
Tumor
-0.3
124
Normal
-0.3
451
Tumor
-0.3
383
Tumor
-0.3
884
Normal
-0.3
465
Tumor
-0.3
785
Tumor
-0.3
432
Normal
-0.4
635
Tumor
-0.4
664
Normal
-0.4
471
Tumor
-0.4
185
Tumor
-0.4
868
Normal
-0.4
141
Tumor
-0.4
777
Tumor
-0.4
161
Tumor
-0.4
615
Tumor
-0.4
873
Tumor
-0.4
172
Normal
-0.4
567
Tumor
-0.4
425
Tumor
-0.4
463
Tumor
-0.4
618
Normal
-0.4
341
Tumor
-0.4
137
Tumor
-0.4
272
Normal
-0.4
881
Tumor
-0.4
188
Normal
-0.5
571
Tumor
-0.5
365
Tumor
-0.5
223
Tumor
-0.5
483
Tumor
-0.5
312
Normal
-0.5
713
Tumor
-0.5
297
Tumor
-0.5
925
Tumor
-0.5
136
Normal
-0.5
387
Tumor
-0.5
147
Tumor
-0.5
414
Normal
-0.5
361
Tumor
-0.5
443
Tumor
-0.6
187
Tumor
-0.6
113
Tumor
-0.6
126
Normal
-0.6
913
Tumor
-0.6
353
Tumor
-0.6
444
Normal
-0.6
422
Normal
-0.6
628
Normal
-0.6
162
Normal
-0.6
641
Tumor
-0.7
423
Tumor
-0.7
413
Tumor
-0.7
461
Tumor
-0.7
192
Normal
-0.7
427
Tumor
-0.7
616
Normal
-0.7
513
Tumor
-0.7
421
Tumor
-0.7
533
Tumor
-0.8
563
Tumor
-0.8
617
Tumor
-0.8
171
Tumor
-0.8
123
Tumor
-0.8
665
Tumor
-0.9
195
Tumor
-0.9
145
Tumor
-0.9
515
Tumor
-0.9
424
Normal
-0.9
428
Normal
-0.9
863
Tumor
-1.0
395
Tumor
-1.0
191
Tumor
-1.0
911
Tumor
-1.0
627
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
