MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.9 nTPM
HPA Brain:62.4 nTPM
GTEx:41.9 nTPM
FANTOM5:51.4 Scaled Tags Per Million
Pig:22.6 nTPM
Mouse:39.7 nTPM
Allen mouse:4.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 62.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.7
2666 Male, age 74, left hemisphere 60.5
2828 Female, age 72, unknown 58.5
1833 Male, age 53, unknown 57.9
1830 Male, age 51, unknown 57.2
1870 Female, age 42, unknown 56.1
2586 Male, age 75, left hemisphere 52.7
1827 Male, age 72, unknown 51.4
2411 Female, age 72, unknown 49.6
2019 Male, age 18, unknown 47.2
2219 Male, age 76, both hemispheres 45.9
Dorsal raphe nucleus
nTPM: 56.8
2016 Female, age 72, unknown 59.1
2750 Male, age 76, both hemispheres 57.9
2298 Female, age 72, unknown 57.8
1828 Male, age 53, unknown 56.6
2047 Male, age 72, unknown 52.6
Inferior colliculus
nTPM: 52.5
2849 Male, age 72, unknown 59.0
1848 Female, age 42, unknown 52.3
2097 Female, age 72, unknown 49.7
1890 Male, age 53, unknown 49.2
Median raphe nucleus
nTPM: 59.5
2220 Male, age 76, midline 59.5
Periaquaductal grey, anterior
nTPM: 53.6
1795 Male, age 51, unknown 56.0
1947 Male, age 18, unknown 55.3
2502 Female, age 75, unknown 49.6
Periaquaductal grey, dorsal
nTPM: 55.6
2850 Male, age 76, both hemispheres 65.4
1831 Male, age 72, unknown 57.2
1840 Male, age 53, unknown 52.8
2464 Female, age 72, unknown 47.0
Periaquaductal grey, lateral
nTPM: 60.0
2140 Male, age 76, both hemispheres 63.9
2272 Male, age 74, both hemispheres 59.7
2053 Male, age 18, unknown 56.5
Pretectal area
nTPM: 51.4
2407 Male, age 75, both hemispheres 59.9
2825 Male, age 18, unknown 58.4
2316 Male, age 76, right hemisphere 56.1
2224 Female, age 72, unknown 54.9
2273 Male, age 74, both hemispheres 54.0
2667 Female, age 75, unknown 53.6
1815 Male, age 53, unknown 47.5
1817 Female, age 42, unknown 47.1
2007 Male, age 72, unknown 46.6
1944 Female, age 72, unknown 45.1
1816 Male, age 51, unknown 42.0
Red nucleus
nTPM: 55.2
2584 Male, age 75, left hemisphere 62.9
1865 Male, age 51, unknown 59.5
2227 Male, age 72, unknown 59.3
1904 Male, age 53, unknown 59.2
2769 Male, age 72, unknown 59.0
2725 Female, age 75, unknown 58.2
2503 Female, age 72, unknown 54.7
1954 Female, age 42, unknown 53.4
2823 Male, age 76, right hemisphere 52.7
1821 Female, age 72, unknown 50.8
2785 Male, age 18, unknown 49.3
2588 Male, age 74, left hemisphere 43.5
Substantia nigra
nTPM: 62.4
2665 Male, age 74, both hemispheres 88.4
2699 Male, age 18, unknown 74.9
2590 Female, age 75, unknown 70.7
2583 Male, age 75, right hemisphere 67.0
1916 Female, age 42, unknown 64.0
1851 Male, age 51, unknown 59.0
2241 Male, age 72, unknown 54.4
1941 Male, age 53, unknown 53.8
1889 Female, age 72, unknown 47.0
2409 Female, age 72, unknown 44.8
Superior colliculus
nTPM: 52.2
2587 Male, age 74, left hemisphere 60.2
1913 Female, age 42, unknown 57.9
2664 Male, age 75, both hemispheres 57.1
1796 Male, age 53, unknown 56.7
1839 Male, age 51, unknown 53.5
1995 Male, age 72, unknown 53.1
2087 Female, age 72, unknown 48.9
2261 Male, age 18, unknown 47.9
2668 Female, age 75, unknown 43.5
1895 Male, age 76, right hemisphere 43.0
Ventral tegmental area
nTPM: 59.9
2021 Male, age 53, unknown 63.9
1915 Female, age 42, unknown 63.0
2223 Female, age 72, unknown 61.4
1942 Male, age 51, unknown 60.2
2218 Male, age 76, both hemispheres 58.5
2410 Female, age 72, unknown 52.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 41.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.9
Samples: 139

Max nTPM: 74.7
Min nTPM: 22.1
Std nTPM: 11.1
Median nTPM: 40.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 74.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 72.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 71.7
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 70.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 69.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 65.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 64.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 62.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 61.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 61.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 60.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 51.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.4
FF:10158-103A5 76 years, female 51.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 22.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.6
Samples: 4

Max nTPM: 25.6
Min nTPM: 19.5
Sample A Female 25.6
Sample B Female 20.9
Sample C Male 24.4
Sample D Male 19.5
Midbrain
nTPM: 21.6
Samples: 4

Max nTPM: 32.5
Min nTPM: 15.9
Sample A Female 32.5
Sample B Female 19.5
Sample C Male 18.5
Sample D Male 15.9
Periaqueductal gray
nTPM: 21.4
Samples: 3

Max nTPM: 24.0
Min nTPM: 19.7
Sample B Female 20.4
Sample C Male 24.0
Sample D Male 19.7
Superior colliculi
nTPM: 20.4
Samples: 4

Max nTPM: 22.0
Min nTPM: 18.3
Sample A Female 22.0
Sample B Female 22.0
Sample C Male 18.3
Sample D Male 19.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 39.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.7
Samples: 4

Max nTPM: 41.4
Min nTPM: 38.1
Sample A Male 41.4
Sample B Male 38.1
Sample C Female 38.9
Sample D Female 40.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.7
70429483 Antisense, RP_050614_01_G07, Mouse strain C57BL/6J (56 days, male) 4.7

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