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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NIPSNAP3A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
70.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
55.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
47.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
38.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
37.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
33.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
33.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
33.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
32.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
32.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
31.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
30.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
29.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
29.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
29.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
29.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
28.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
28.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
27.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
27.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
27.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
26.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
26.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
26.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
26.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
26.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
25.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
25.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
25.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
24.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
24.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
24.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
24.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
23.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
23.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
23.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
23.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
23.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
23.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
23.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
23.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
22.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
21.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
21.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
21.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
21.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
21.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
20.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
19.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
19.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
18.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
18.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
17.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NIPSNAP3A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.0
Number of samples
231
Samples
Sample
Description
TPM
DO50832
0 years, male, NA, stage:3, alive, 90 days
46.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
34.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
32.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
31.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
31.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
31.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
30.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
30.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
29.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
28.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
28.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
26.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
26.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
26.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
25.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
24.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
24.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
23.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
23.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
23.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
21.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
19.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
18.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
12.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.9
911
Tumor
1.2
465
Tumor
0.9
695
Tumor
0.9
867
Tumor
0.9
884
Normal
0.8
863
Tumor
0.8
868
Normal
0.8
1041
Tumor
0.8
298
Normal
0.7
786
Normal
0.7
513
Tumor
0.7
864
Normal
0.7
422
Normal
0.7
1046
Normal
0.7
1015
Tumor
0.7
416
Normal
0.7
412
Normal
0.7
756
Normal
0.7
698
Normal
0.7
912
Normal
0.7
741
Tumor
0.7
572
Normal
0.6
452
Normal
0.6
468
Normal
0.6
128
Normal
0.6
636
Normal
0.6
1026
Normal
0.6
414
Normal
0.6
546
Normal
0.6
428
Normal
0.6
481
Tumor
0.6
376
Normal
0.6
648
Normal
0.6
878
Normal
0.6
358
Normal
0.6
514
Normal
0.6
716
Normal
0.6
364
Normal
0.5
464
Normal
0.5
1013
Tumor
0.5
663
Tumor
0.5
925
Tumor
0.5
262
Normal
0.5
824
Normal
0.5
478
Normal
0.5
628
Normal
0.5
448
Normal
0.5
534
Normal
0.5
954
Normal
0.5
564
Normal
0.5
528
Normal
0.5
1045
Tumor
0.5
662
Normal
0.5
664
Normal
0.5
126
Normal
0.5
477
Tumor
0.5
955
Tumor
0.5
365
Tumor
0.5
526
Normal
0.5
142
Normal
0.5
487
Tumor
0.5
462
Normal
0.5
615
Tumor
0.5
148
Normal
0.5
436
Normal
0.5
723
Tumor
0.5
696
Normal
0.5
816
Normal
0.5
424
Normal
0.5
466
Normal
0.5
286
Normal
0.5
432
Normal
0.5
922
Normal
0.5
618
Normal
0.5
1022
Normal
0.5
354
Normal
0.5
818
Normal
0.5
746
Normal
0.5
228
Normal
0.5
212
Normal
0.5
714
Normal
0.4
862
Normal
0.4
616
Normal
0.4
162
Normal
0.4
728
Normal
0.4
926
Normal
0.4
515
Tumor
0.4
964
Normal
0.4
738
Normal
0.4
882
Normal
0.4
516
Normal
0.4
865
Tumor
0.4
866
Normal
0.4
574
Normal
0.4
1032
Normal
0.4
328
Normal
0.4
958
Normal
0.4
554
Normal
0.4
914
Normal
0.4
132
Normal
0.4
852
Normal
0.4
742
Normal
0.4
1016
Normal
0.4
484
Normal
0.4
642
Normal
0.4
472
Normal
0.4
938
Normal
0.4
127
Tumor
0.4
482
Normal
0.4
232
Normal
0.4
446
Normal
0.4
138
Normal
0.4
415
Tumor
0.4
362
Normal
0.4
214
Normal
0.4
314
Normal
0.4
722
Normal
0.4
944
Normal
0.4
112
Tumor
0.4
744
Normal
0.4
332
Normal
0.4
778
Normal
0.3
344
Normal
0.3
111
Normal
0.3
858
Normal
0.3
224
Normal
0.3
444
Normal
0.3
976
Normal
0.3
268
Normal
0.3
146
Normal
0.3
186
Normal
0.3
686
Normal
0.3
1014
Normal
0.3
196
Normal
0.3
361
Tumor
0.3
426
Normal
0.3
494
Normal
0.3
356
Normal
0.3
284
Normal
0.3
312
Normal
0.3
916
Normal
0.3
435
Tumor
0.3
984
Normal
0.3
172
Normal
0.3
141
Tumor
0.3
278
Normal
0.3
261
Tumor
0.3
394
Normal
0.3
147
Tumor
0.3
1042
Normal
0.3
488
Normal
0.3
352
Normal
0.3
918
Normal
0.3
456
Normal
0.3
924
Normal
0.3
874
Normal
0.3
978
Normal
0.2
474
Normal
0.2
136
Normal
0.2
982
Normal
0.2
915
Tumor
0.2
518
Normal
0.2
558
Normal
0.2
411
Tumor
0.2
388
Normal
0.2
1028
Normal
0.2
1044
Normal
0.2
956
Normal
0.2
145
Tumor
0.2
567
Tumor
0.2
423
Tumor
0.2
366
Normal
0.2
258
Normal
0.2
218
Normal
0.2
568
Normal
0.2
392
Normal
0.2
272
Normal
0.2
857
Tumor
0.2
968
Normal
0.2
672
Normal
0.2
434
Normal
0.2
342
Normal
0.2
451
Tumor
0.2
188
Normal
0.2
755
Tumor
0.2
517
Tumor
0.2
114
Normal
0.2
341
Tumor
0.2
571
Tumor
0.2
666
Normal
0.1
427
Tumor
0.1
538
Normal
0.1
222
Normal
0.1
524
Normal
0.1
461
Tumor
0.1
952
Normal
0.1
384
Normal
0.1
124
Normal
0.1
386
Normal
0.1
137
Tumor
0.1
492
Normal
0.1
785
Tumor
0.1
396
Normal
0.1
267
Tumor
0.1
921
Tumor
0.0
966
Normal
0.0
421
Tumor
0.0
553
Tumor
0.0
981
Tumor
0.0
192
Normal
0.0
433
Tumor
0.0
368
Normal
0.0
563
Tumor
0.0
393
Tumor
-0.1
557
Tumor
-0.1
737
Tumor
-0.1
745
Tumor
-0.1
861
Tumor
-0.1
641
Tumor
-0.1
536
Normal
-0.1
498
Normal
-0.1
873
Tumor
-0.1
573
Tumor
-0.1
463
Tumor
-0.1
913
Tumor
-0.1
685
Tumor
-0.1
431
Tumor
-0.1
447
Tumor
-0.1
353
Tumor
-0.1
357
Tumor
-0.1
721
Tumor
-0.2
777
Tumor
-0.2
297
Tumor
-0.2
231
Tumor
-0.2
953
Tumor
-0.2
383
Tumor
-0.2
161
Tumor
-0.2
191
Tumor
-0.2
963
Tumor
-0.2
724
Normal
-0.2
823
Tumor
-0.2
471
Tumor
-0.2
1043
Tumor
-0.2
883
Tumor
-0.3
113
Tumor
-0.3
617
Tumor
-0.3
533
Tumor
-0.3
271
Tumor
-0.3
135
Tumor
-0.3
814
Normal
-0.3
1027
Tumor
-0.3
483
Tumor
-0.4
217
Tumor
-0.4
977
Tumor
-0.4
467
Tumor
-0.4
497
Tumor
-0.4
445
Tumor
-0.4
525
Tumor
-0.4
491
Tumor
-0.4
375
Tumor
-0.4
327
Tumor
-0.4
223
Tumor
-0.4
647
Tumor
-0.4
123
Tumor
-0.4
455
Tumor
-0.4
851
Tumor
-0.4
185
Tumor
-0.4
443
Tumor
-0.4
943
Tumor
-0.5
815
Tumor
-0.5
221
Tumor
-0.5
425
Tumor
-0.5
125
Tumor
-0.5
715
Tumor
-0.5
917
Tumor
-0.6
257
Tumor
-0.6
665
Tumor
-0.6
727
Tumor
-0.6
187
Tumor
-0.6
635
Tumor
-0.6
881
Tumor
-0.6
1031
Tumor
-0.6
213
Tumor
-0.6
697
Tumor
-0.6
195
Tumor
-0.7
1025
Tumor
-0.7
975
Tumor
-0.7
211
Tumor
-0.7
813
Tumor
-0.7
817
Tumor
-0.7
355
Tumor
-0.7
277
Tumor
-0.7
937
Tumor
-0.7
313
Tumor
-0.7
283
Tumor
-0.8
311
Tumor
-0.8
537
Tumor
-0.8
171
Tumor
-0.8
473
Tumor
-0.8
493
Tumor
-0.8
923
Tumor
-0.8
545
Tumor
-0.8
957
Tumor
-0.9
131
Tumor
-0.9
363
Tumor
-0.9
523
Tumor
-0.9
413
Tumor
-0.9
395
Tumor
-0.9
743
Tumor
-0.9
713
Tumor
-1.0
983
Tumor
-1.0
227
Tumor
-1.0
671
Tumor
-1.0
331
Tumor
-1.0
527
Tumor
-1.0
877
Tumor
-1.0
967
Tumor
-1.0
385
Tumor
-1.0
391
Tumor
-1.1
285
Tumor
-1.1
387
Tumor
-1.1
1021
Tumor
-1.1
535
Tumor
-1.2
343
Tumor
-1.2
351
Tumor
-1.3
951
Tumor
-1.3
965
Tumor
-1.3
661
Tumor
-1.4
367
Tumor
-1.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
