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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UGGT1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
64.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
58.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
46.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
44.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
43.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
38.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
37.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
36.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
35.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
35.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
34.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
34.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
32.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
32.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
32.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
31.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
30.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
30.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
30.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
30.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
29.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
29.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
28.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
28.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
28.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
28.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
27.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
27.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
27.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
26.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
25.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
25.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
25.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
25.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
25.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
25.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
24.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
24.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
23.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
23.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
23.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
23.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
23.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
22.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
22.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
21.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
21.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
21.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
21.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
20.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
20.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
20.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
19.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
19.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
19.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
18.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
18.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
17.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
17.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
17.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
16.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
16.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
16.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
14.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UGGT1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.4
Number of samples
231
Samples
Sample
Description
TPM
DO23514
0 years, male, NA, stage:2, alive, 1290 days
37.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
33.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
32.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
25.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
24.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
22.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
21.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
9.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
727
Tumor
0.8
743
Tumor
0.8
357
Tumor
0.7
227
Tumor
0.7
857
Tumor
0.7
131
Tumor
0.7
745
Tumor
0.6
393
Tumor
0.5
171
Tumor
0.5
351
Tumor
0.5
523
Tumor
0.4
527
Tumor
0.4
615
Tumor
0.4
715
Tumor
0.4
724
Normal
0.4
261
Tumor
0.4
445
Tumor
0.4
915
Tumor
0.4
755
Tumor
0.3
723
Tumor
0.3
963
Tumor
0.3
481
Tumor
0.3
111
Normal
0.3
257
Tumor
0.3
741
Tumor
0.3
426
Normal
0.3
648
Normal
0.3
127
Tumor
0.3
636
Normal
0.3
451
Tumor
0.3
466
Normal
0.3
742
Normal
0.3
862
Normal
0.2
526
Normal
0.2
518
Normal
0.2
877
Tumor
0.2
786
Normal
0.2
616
Normal
0.2
392
Normal
0.2
514
Normal
0.2
944
Normal
0.2
414
Normal
0.2
286
Normal
0.2
137
Tumor
0.2
1025
Tumor
0.2
435
Tumor
0.2
866
Normal
0.2
232
Normal
0.2
738
Normal
0.2
662
Normal
0.2
114
Normal
0.2
468
Normal
0.2
376
Normal
0.2
922
Normal
0.2
124
Normal
0.2
125
Tumor
0.2
696
Normal
0.2
953
Tumor
0.2
343
Tumor
0.2
128
Normal
0.2
545
Tumor
0.2
191
Tumor
0.2
568
Normal
0.2
868
Normal
0.2
1014
Normal
0.2
714
Normal
0.2
778
Normal
0.2
756
Normal
0.1
172
Normal
0.1
148
Normal
0.1
713
Tumor
0.1
525
Tumor
0.1
452
Normal
0.1
978
Normal
0.1
863
Tumor
0.1
744
Normal
0.1
977
Tumor
0.1
867
Tumor
0.1
358
Normal
0.1
813
Tumor
0.1
968
Normal
0.1
572
Normal
0.1
686
Normal
0.1
914
Normal
0.1
314
Normal
0.1
271
Tumor
0.1
387
Tumor
0.1
664
Normal
0.1
342
Normal
0.1
262
Normal
0.1
462
Normal
0.1
528
Normal
0.1
196
Normal
0.1
983
Tumor
0.1
1015
Tumor
0.1
557
Tumor
0.1
912
Normal
0.1
212
Normal
0.1
728
Normal
0.1
258
Normal
0.1
926
Normal
0.1
356
Normal
0.1
432
Normal
0.1
721
Tumor
0.1
558
Normal
0.1
436
Normal
0.1
284
Normal
0.1
126
Normal
0.1
816
Normal
0.1
424
Normal
0.1
1022
Normal
0.1
161
Tumor
0.1
952
Normal
0.1
1016
Normal
0.1
564
Normal
0.1
553
Tumor
0.1
698
Normal
0.1
362
Normal
0.1
938
Normal
0.1
223
Tumor
0.1
665
Tumor
0.1
1032
Normal
0.1
814
Normal
0.1
955
Tumor
0.1
864
Normal
0.1
467
Tumor
0.1
878
Normal
0.1
746
Normal
0.1
132
Normal
0.1
186
Normal
0.1
861
Tumor
0.1
412
Normal
0.1
422
Normal
0.1
628
Normal
0.1
142
Normal
0.1
218
Normal
0.1
394
Normal
0.1
354
Normal
0.1
981
Tumor
0.1
672
Normal
0.1
954
Normal
0.1
716
Normal
0.1
368
Normal
0.1
162
Normal
0.1
537
Tumor
0.1
473
Tumor
0.1
464
Normal
0.1
147
Tumor
0.1
497
Tumor
0.1
534
Normal
0.1
388
Normal
0.0
448
Normal
0.0
884
Normal
0.0
272
Normal
0.0
618
Normal
0.0
873
Tumor
0.0
984
Normal
0.0
298
Normal
0.0
918
Normal
0.0
488
Normal
0.0
484
Normal
0.0
447
Tumor
0.0
332
Normal
0.0
278
Normal
0.0
228
Normal
0.0
852
Normal
0.0
722
Normal
0.0
482
Normal
0.0
567
Tumor
0.0
428
Normal
0.0
352
Normal
0.0
1028
Normal
0.0
911
Tumor
0.0
546
Normal
0.0
138
Normal
0.0
1046
Normal
0.0
858
Normal
0.0
285
Tumor
0.0
446
Normal
0.0
964
Normal
0.0
187
Tumor
0.0
494
Normal
0.0
824
Normal
0.0
554
Normal
0.0
427
Tumor
0.0
574
Normal
0.0
472
Normal
0.0
671
Tumor
0.0
666
Normal
0.0
1043
Tumor
0.0
224
Normal
0.0
492
Normal
0.0
384
Normal
0.0
524
Normal
0.0
456
Normal
0.0
818
Normal
0.0
312
Normal
0.0
434
Normal
0.0
123
Tumor
0.0
882
Normal
0.0
113
Tumor
0.0
135
Tumor
0.0
815
Tumor
0.0
958
Normal
0.0
145
Tumor
0.0
1026
Normal
0.0
331
Tumor
0.0
982
Normal
0.0
474
Normal
0.0
433
Tumor
0.0
188
Normal
0.0
222
Normal
0.0
956
Normal
0.0
966
Normal
0.0
642
Normal
0.0
136
Normal
0.0
573
Tumor
0.0
364
Normal
0.0
366
Normal
0.0
785
Tumor
-0.1
851
Tumor
-0.1
195
Tumor
-0.1
1044
Normal
-0.1
976
Normal
-0.1
874
Normal
-0.1
516
Normal
-0.1
937
Tumor
-0.1
965
Tumor
-0.1
367
Tumor
-0.1
685
Tumor
-0.1
487
Tumor
-0.1
214
Normal
-0.1
517
Tumor
-0.1
344
Normal
-0.1
396
Normal
-0.1
536
Normal
-0.1
386
Normal
-0.1
916
Normal
-0.1
423
Tumor
-0.1
924
Normal
-0.1
353
Tumor
-0.1
957
Tumor
-0.1
146
Normal
-0.1
635
Tumor
-0.1
641
Tumor
-0.1
1042
Normal
-0.1
268
Normal
-0.1
328
Normal
-0.1
327
Tumor
-0.1
777
Tumor
-0.1
627
Tumor
-0.1
444
Normal
-0.1
363
Tumor
-0.1
975
Tumor
-0.1
923
Tumor
-0.2
498
Normal
-0.2
967
Tumor
-0.2
491
Tumor
-0.2
463
Tumor
-0.2
313
Tumor
-0.2
647
Tumor
-0.2
917
Tumor
-0.2
823
Tumor
-0.2
538
Normal
-0.2
297
Tumor
-0.2
141
Tumor
-0.2
697
Tumor
-0.2
375
Tumor
-0.2
217
Tumor
-0.2
365
Tumor
-0.2
515
Tumor
-0.2
383
Tumor
-0.2
465
Tumor
-0.2
416
Normal
-0.2
192
Normal
-0.2
1013
Tumor
-0.2
477
Tumor
-0.2
478
Normal
-0.2
421
Tumor
-0.2
361
Tumor
-0.2
443
Tumor
-0.2
1021
Tumor
-0.2
341
Tumor
-0.2
925
Tumor
-0.2
951
Tumor
-0.3
231
Tumor
-0.3
571
Tumor
-0.3
737
Tumor
-0.3
695
Tumor
-0.3
471
Tumor
-0.3
411
Tumor
-0.3
112
Tumor
-0.3
461
Tumor
-0.3
817
Tumor
-0.3
1045
Tumor
-0.3
415
Tumor
-0.3
385
Tumor
-0.3
455
Tumor
-0.3
267
Tumor
-0.3
617
Tumor
-0.3
943
Tumor
-0.3
311
Tumor
-0.3
185
Tumor
-0.3
661
Tumor
-0.3
493
Tumor
-0.3
211
Tumor
-0.4
431
Tumor
-0.4
283
Tumor
-0.4
1031
Tumor
-0.4
391
Tumor
-0.4
221
Tumor
-0.4
533
Tumor
-0.4
395
Tumor
-0.4
881
Tumor
-0.4
913
Tumor
-0.4
277
Tumor
-0.4
921
Tumor
-0.4
413
Tumor
-0.5
213
Tumor
-0.5
355
Tumor
-0.5
663
Tumor
-0.5
563
Tumor
-0.5
1027
Tumor
-0.5
1041
Tumor
-0.5
883
Tumor
-0.5
425
Tumor
-0.6
535
Tumor
-0.6
483
Tumor
-0.6
865
Tumor
-0.7
513
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
