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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RTP4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
45.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
41.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
40.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
35.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
34.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
28.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
27.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
25.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
22.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
21.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
20.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
16.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
14.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
6.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
5.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
4.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RTP4 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.9
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
73.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
72.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
59.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
56.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
55.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
51.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
43.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
39.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
34.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
33.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
33.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
31.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
29.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
29.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
26.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
26.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
26.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
26.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
22.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
22.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
21.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
6.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
2.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
2.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
1.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
327
Tumor
1.8
471
Tumor
1.6
147
Tumor
1.6
553
Tumor
1.5
727
Tumor
1.4
955
Tumor
1.3
477
Tumor
1.2
533
Tumor
1.1
473
Tumor
1.1
861
Tumor
0.9
863
Tumor
0.9
777
Tumor
0.9
956
Normal
0.9
461
Tumor
0.8
873
Tumor
0.7
915
Tumor
0.7
741
Tumor
0.7
865
Tumor
0.7
951
Tumor
0.6
411
Tumor
0.6
538
Normal
0.6
554
Normal
0.6
465
Tumor
0.5
185
Tumor
0.5
921
Tumor
0.5
737
Tumor
0.5
451
Tumor
0.5
355
Tumor
0.4
913
Tumor
0.4
755
Tumor
0.4
414
Normal
0.4
966
Normal
0.4
1027
Tumor
0.3
785
Tumor
0.3
925
Tumor
0.3
426
Normal
0.3
424
Normal
0.3
415
Tumor
0.3
445
Tumor
0.3
963
Tumor
0.3
433
Tumor
0.2
427
Tumor
0.2
883
Tumor
0.2
422
Normal
0.2
428
Normal
0.2
874
Normal
0.2
161
Tumor
0.1
467
Tumor
0.1
814
Normal
0.1
452
Normal
0.1
443
Tumor
0.1
937
Tumor
0.1
878
Normal
0.1
557
Tumor
0.1
455
Tumor
0.0
914
Normal
0.0
423
Tumor
0.0
431
Tumor
0.0
953
Tumor
0.0
534
Normal
0.0
867
Tumor
0.0
416
Normal
0.0
412
Normal
0.0
435
Tumor
-0.1
425
Tumor
-0.1
957
Tumor
-0.1
171
Tumor
-0.1
786
Normal
-0.1
911
Tumor
-0.1
943
Tumor
-0.1
954
Normal
-0.1
1041
Tumor
-0.2
434
Normal
-0.2
421
Tumor
-0.2
481
Tumor
-0.2
744
Normal
-0.2
813
Tumor
-0.2
444
Normal
-0.2
1026
Normal
-0.2
1042
Normal
-0.3
952
Normal
-0.3
432
Normal
-0.3
944
Normal
-0.3
778
Normal
-0.3
1032
Normal
-0.3
1021
Tumor
-0.3
1028
Normal
-0.3
436
Normal
-0.3
742
Normal
-0.3
413
Tumor
-0.3
446
Normal
-0.3
884
Normal
-0.3
968
Normal
-0.3
882
Normal
-0.4
1022
Normal
-0.4
462
Normal
-0.4
478
Normal
-0.4
916
Normal
-0.4
474
Normal
-0.4
964
Normal
-0.4
724
Normal
-0.4
862
Normal
-0.5
756
Normal
-0.5
738
Normal
-0.5
877
Tumor
-0.5
923
Tumor
-0.5
866
Normal
-0.5
864
Normal
-0.5
546
Normal
-0.5
466
Normal
-0.6
924
Normal
-0.6
728
Normal
-0.6
976
Normal
-0.6
746
Normal
-0.6
881
Tumor
-0.7
188
Normal
-0.7
975
Tumor
-0.7
958
Normal
-0.7
328
Normal
-0.7
527
Tumor
-0.7
938
Normal
-0.7
172
Normal
-0.7
922
Normal
-0.7
926
Normal
-0.8
745
Tumor
-0.8
723
Tumor
-0.8
912
Normal
-0.8
558
Normal
-0.8
186
Normal
-0.9
1031
Tumor
-0.9
468
Normal
-0.9
472
Normal
-0.9
148
Normal
-0.9
528
Normal
-0.9
187
Tumor
-0.9
356
Normal
-0.9
1025
Tumor
-1.0
917
Tumor
-1.0
965
Tumor
-1.0
563
Tumor
-1.0
967
Tumor
-1.0
162
Normal
-1.0
464
Normal
-1.1
482
Normal
-1.1
574
Normal
-1.1
456
Normal
-1.1
568
Normal
-1.1
572
Normal
-1.2
545
Tumor
-1.2
564
Normal
-1.2
868
Normal
-1.3
571
Tumor
-1.3
567
Tumor
-1.3
364
Normal
-1.3
918
Normal
-1.4
463
Tumor
-1.5
573
Tumor
-1.5
363
Tumor
-2.3
743
Tumor
-2.3
537
Tumor
-2.5
351
Tumor
N/A
231
Tumor
N/A
352
Normal
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
114
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
483
Tumor
N/A
484
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
268
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
721
Tumor
N/A
722
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
858
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
1045
Tumor
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
513
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
665
Tumor
N/A
666
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
331
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
213
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
341
Tumor
N/A
221
Tumor
N/A
342
Normal
N/A
222
Normal
N/A
343
Tumor
N/A
223
Tumor
N/A
344
Normal
N/A
224
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
