We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LIMD2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
174.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
89.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
85.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
72.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
64.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
55.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
55.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
51.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
50.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
47.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
46.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
46.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
44.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
44.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
43.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
42.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
38.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
38.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
37.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
36.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
36.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
36.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
32.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
32.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
32.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
31.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
31.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
31.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
31.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
30.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
29.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
28.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
28.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
28.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
27.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
27.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
26.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
26.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
25.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
25.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
25.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
24.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
24.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
23.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
23.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
23.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
23.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
22.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
21.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
20.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
19.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
17.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
17.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
17.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
12.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
5.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LIMD2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.0
Number of samples
231
Samples
Sample
Description
TPM
DO23547
0 years, male, NA, stage:1, alive, 1020 days
41.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
41.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
40.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
31.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
27.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
27.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
26.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
25.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
25.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
23.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
2.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
2.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
2.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
2.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
2.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
2.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
2.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
661
Tumor
2.0
211
Tumor
1.6
536
Normal
1.4
724
Normal
1.3
966
Normal
1.3
455
Tumor
1.2
524
Normal
1.2
447
Tumor
1.2
471
Tumor
1.2
916
Normal
1.1
975
Tumor
1.1
721
Tumor
1.1
535
Tumor
1.1
385
Tumor
1.1
1031
Tumor
1.1
861
Tumor
1.0
881
Tumor
1.0
492
Normal
1.0
434
Normal
1.0
814
Normal
1.0
1043
Tumor
1.0
983
Tumor
0.9
917
Tumor
0.9
943
Tumor
0.9
311
Tumor
0.9
498
Normal
0.9
478
Normal
0.9
213
Tumor
0.8
192
Normal
0.8
963
Tumor
0.8
952
Normal
0.8
297
Tumor
0.7
224
Normal
0.7
525
Tumor
0.7
516
Normal
0.6
188
Normal
0.6
823
Tumor
0.6
351
Tumor
0.6
493
Tumor
0.6
277
Tumor
0.6
283
Tumor
0.6
716
Normal
0.6
262
Normal
0.6
914
Normal
0.6
545
Tumor
0.6
195
Tumor
0.6
383
Tumor
0.6
884
Normal
0.6
817
Tumor
0.6
362
Normal
0.6
686
Normal
0.6
312
Normal
0.6
444
Normal
0.6
918
Normal
0.6
926
Normal
0.6
284
Normal
0.6
212
Normal
0.5
1042
Normal
0.5
558
Normal
0.5
518
Normal
0.5
978
Normal
0.5
415
Tumor
0.5
563
Tumor
0.5
528
Normal
0.5
1015
Tumor
0.5
217
Tumor
0.5
538
Normal
0.5
883
Tumor
0.5
467
Tumor
0.4
628
Normal
0.4
877
Tumor
0.4
913
Tumor
0.4
1044
Normal
0.4
976
Normal
0.4
494
Normal
0.4
491
Tumor
0.4
384
Normal
0.4
386
Normal
0.4
574
Normal
0.4
355
Tumor
0.4
922
Normal
0.4
1028
Normal
0.4
461
Tumor
0.4
573
Tumor
0.4
778
Normal
0.3
958
Normal
0.3
617
Tumor
0.3
285
Tumor
0.3
696
Normal
0.3
1025
Tumor
0.3
223
Tumor
0.3
396
Normal
0.3
925
Tumor
0.3
451
Tumor
0.3
126
Normal
0.3
272
Normal
0.3
135
Tumor
0.3
366
Normal
0.3
852
Normal
0.3
185
Tumor
0.3
268
Normal
0.3
141
Tumor
0.3
968
Normal
0.3
984
Normal
0.3
142
Normal
0.3
967
Tumor
0.3
874
Normal
0.3
662
Normal
0.3
367
Tumor
0.3
278
Normal
0.2
433
Tumor
0.2
815
Tumor
0.2
951
Tumor
0.2
221
Tumor
0.2
727
Tumor
0.2
331
Tumor
0.2
514
Normal
0.2
468
Normal
0.2
923
Tumor
0.2
714
Normal
0.2
187
Tumor
0.2
553
Tumor
0.2
456
Normal
0.2
138
Normal
0.2
924
Normal
0.2
474
Normal
0.2
443
Tumor
0.2
857
Tumor
0.2
957
Tumor
0.2
146
Normal
0.2
1016
Normal
0.2
882
Normal
0.2
865
Tumor
0.1
912
Normal
0.1
432
Normal
0.1
554
Normal
0.1
191
Tumor
0.1
956
Normal
0.1
488
Normal
0.1
161
Tumor
0.1
728
Normal
0.1
497
Tumor
0.1
955
Tumor
0.1
526
Normal
0.1
867
Tumor
0.1
866
Normal
0.1
864
Normal
0.1
878
Normal
0.1
365
Tumor
0.1
413
Tumor
0.1
697
Tumor
0.1
298
Normal
0.1
218
Normal
0.1
131
Tumor
0.1
412
Normal
0.1
172
Normal
0.0
446
Normal
0.0
332
Normal
0.0
472
Normal
0.0
214
Normal
0.0
546
Normal
0.0
286
Normal
0.0
391
Tumor
0.0
375
Tumor
0.0
484
Normal
0.0
416
Normal
0.0
1032
Normal
0.0
862
Normal
0.0
328
Normal
0.0
756
Normal
0.0
136
Normal
0.0
1026
Normal
0.0
483
Tumor
0.0
364
Normal
0.0
148
Normal
0.0
363
Tumor
0.0
964
Normal
0.0
368
Normal
0.0
228
Normal
0.0
738
Normal
0.0
232
Normal
0.0
343
Tumor
0.0
387
Tumor
0.0
572
Normal
0.0
421
Tumor
0.0
271
Tumor
0.0
258
Normal
0.0
527
Tumor
0.0
1046
Normal
0.0
737
Tumor
0.0
1041
Tumor
-0.1
785
Tumor
-0.1
1022
Normal
-0.1
723
Tumor
-0.1
537
Tumor
-0.1
868
Normal
-0.1
392
Normal
-0.1
395
Tumor
-0.1
186
Normal
-0.1
564
Normal
-0.1
786
Normal
-0.1
921
Tumor
-0.1
463
Tumor
-0.1
816
Normal
-0.1
742
Normal
-0.1
915
Tumor
-0.1
818
Normal
-0.1
487
Tumor
-0.1
137
Tumor
-0.1
1014
Normal
-0.1
124
Normal
-0.1
162
Normal
-0.1
352
Normal
-0.1
534
Normal
-0.1
145
Tumor
-0.1
436
Normal
-0.2
125
Tumor
-0.2
858
Normal
-0.2
388
Normal
-0.2
642
Normal
-0.2
713
Tumor
-0.2
755
Tumor
-0.2
937
Tumor
-0.2
466
Normal
-0.2
722
Normal
-0.2
824
Normal
-0.2
481
Tumor
-0.2
664
Normal
-0.2
394
Normal
-0.2
114
Normal
-0.2
568
Normal
-0.2
982
Normal
-0.2
744
Normal
-0.2
482
Normal
-0.3
376
Normal
-0.3
196
Normal
-0.3
111
Normal
-0.3
851
Tumor
-0.3
428
Normal
-0.3
813
Tumor
-0.3
424
Normal
-0.3
261
Tumor
-0.3
132
Normal
-0.3
636
Normal
-0.3
685
Tumor
-0.3
356
Normal
-0.3
314
Normal
-0.3
1021
Tumor
-0.3
977
Tumor
-0.3
954
Normal
-0.3
695
Tumor
-0.4
618
Normal
-0.4
462
Normal
-0.4
965
Tumor
-0.4
445
Tumor
-0.4
746
Normal
-0.4
873
Tumor
-0.4
431
Tumor
-0.4
671
Tumor
-0.4
517
Tumor
-0.4
422
Normal
-0.4
473
Tumor
-0.4
222
Normal
-0.4
944
Normal
-0.4
698
Normal
-0.4
313
Tumor
-0.4
938
Normal
-0.4
616
Normal
-0.4
452
Normal
-0.4
113
Tumor
-0.4
641
Tumor
-0.4
557
Tumor
-0.4
672
Normal
-0.5
128
Normal
-0.5
354
Normal
-0.5
147
Tumor
-0.5
327
Tumor
-0.5
743
Tumor
-0.5
341
Tumor
-0.5
344
Normal
-0.5
464
Normal
-0.5
715
Tumor
-0.5
393
Tumor
-0.6
171
Tumor
-0.6
426
Normal
-0.6
427
Tumor
-0.6
648
Normal
-0.6
361
Tumor
-0.6
448
Normal
-0.6
745
Tumor
-0.7
414
Normal
-0.7
257
Tumor
-0.7
666
Normal
-0.7
863
Tumor
-0.7
533
Tumor
-0.7
1045
Tumor
-0.8
411
Tumor
-0.8
231
Tumor
-0.8
515
Tumor
-0.8
127
Tumor
-0.8
435
Tumor
-0.8
267
Tumor
-0.8
477
Tumor
-0.9
425
Tumor
-0.9
615
Tumor
-0.9
227
Tumor
-0.9
353
Tumor
-0.9
358
Normal
-0.9
627
Tumor
-1.0
513
Tumor
-1.0
911
Tumor
-1.0
523
Tumor
-1.0
1027
Tumor
-1.0
981
Tumor
-1.1
357
Tumor
-1.1
777
Tumor
-1.1
423
Tumor
-1.1
342
Normal
-1.1
571
Tumor
-1.1
1013
Tumor
-1.1
112
Tumor
-1.1
567
Tumor
-1.2
741
Tumor
-1.2
663
Tumor
-1.2
953
Tumor
-1.3
635
Tumor
-1.3
123
Tumor
-1.4
647
Tumor
-1.4
465
Tumor
-1.6
665
Tumor
-2.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
