MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.3 nTPM
HPA Brain:20.5 nTPM
GTEx:21.3 nTPM
FANTOM5:27.4 Scaled Tags Per Million
Pig:1.4 nTPM
Mouse:4.3 nTPM
Allen mouse:4.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 20.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.4
2019 Male, age 18, unknown 23.4
2586 Male, age 75, left hemisphere 19.7
1827 Male, age 72, unknown 19.3
2666 Male, age 74, left hemisphere 18.9
2411 Female, age 72, unknown 18.5
1830 Male, age 51, unknown 17.9
2828 Female, age 72, unknown 17.9
1870 Female, age 42, unknown 17.2
1833 Male, age 53, unknown 16.7
2219 Male, age 76, both hemispheres 14.8
Dorsal raphe nucleus
nTPM: 16.8
2047 Male, age 72, unknown 18.0
1828 Male, age 53, unknown 17.0
2016 Female, age 72, unknown 16.6
2298 Female, age 72, unknown 16.3
2750 Male, age 76, both hemispheres 16.2
Inferior colliculus
nTPM: 18.3
2097 Female, age 72, unknown 19.7
1890 Male, age 53, unknown 19.4
1848 Female, age 42, unknown 18.3
2849 Male, age 72, unknown 15.8
Median raphe nucleus
nTPM: 14.3
2220 Male, age 76, midline 14.3
Periaquaductal grey, anterior
nTPM: 16.6
2502 Female, age 75, unknown 18.3
1795 Male, age 51, unknown 17.0
1947 Male, age 18, unknown 14.4
Periaquaductal grey, dorsal
nTPM: 17.4
2464 Female, age 72, unknown 19.3
1840 Male, age 53, unknown 19.1
1831 Male, age 72, unknown 16.8
2850 Male, age 76, both hemispheres 14.4
Periaquaductal grey, lateral
nTPM: 15.9
2053 Male, age 18, unknown 17.2
2140 Male, age 76, both hemispheres 15.9
2272 Male, age 74, both hemispheres 14.7
Pretectal area
nTPM: 19.7
2007 Male, age 72, unknown 25.2
1817 Female, age 42, unknown 22.0
2316 Male, age 76, right hemisphere 21.7
1944 Female, age 72, unknown 20.8
1816 Male, age 51, unknown 20.4
1815 Male, age 53, unknown 20.3
2667 Female, age 75, unknown 19.5
2407 Male, age 75, both hemispheres 18.0
2825 Male, age 18, unknown 17.2
2224 Female, age 72, unknown 16.0
2273 Male, age 74, both hemispheres 15.2
Red nucleus
nTPM: 20.5
2588 Male, age 74, left hemisphere 24.2
2725 Female, age 75, unknown 22.3
2785 Male, age 18, unknown 22.1
2823 Male, age 76, right hemisphere 21.6
2584 Male, age 75, left hemisphere 21.1
1821 Female, age 72, unknown 20.5
2503 Female, age 72, unknown 20.1
1865 Male, age 51, unknown 19.9
2769 Male, age 72, unknown 19.6
2227 Male, age 72, unknown 18.5
1954 Female, age 42, unknown 18.3
1904 Male, age 53, unknown 17.7
Substantia nigra
nTPM: 17.9
2409 Female, age 72, unknown 21.2
1889 Female, age 72, unknown 20.2
2665 Male, age 74, both hemispheres 18.8
1851 Male, age 51, unknown 18.5
2583 Male, age 75, right hemisphere 18.3
2241 Male, age 72, unknown 17.2
1916 Female, age 42, unknown 17.0
2590 Female, age 75, unknown 16.7
1941 Male, age 53, unknown 16.0
2699 Male, age 18, unknown 15.3
Superior colliculus
nTPM: 18.4
1895 Male, age 76, right hemisphere 21.6
1796 Male, age 53, unknown 20.4
2587 Male, age 74, left hemisphere 18.8
2261 Male, age 18, unknown 18.6
2087 Female, age 72, unknown 18.3
1913 Female, age 42, unknown 18.1
1995 Male, age 72, unknown 17.7
2664 Male, age 75, both hemispheres 17.4
1839 Male, age 51, unknown 17.2
2668 Female, age 75, unknown 16.1
Ventral tegmental area
nTPM: 16.3
2410 Female, age 72, unknown 18.6
2021 Male, age 53, unknown 16.6
1915 Female, age 42, unknown 16.3
1942 Male, age 51, unknown 16.2
2223 Female, age 72, unknown 15.9
2218 Male, age 76, both hemispheres 14.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 21.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.3
Samples: 139

Max nTPM: 35.2
Min nTPM: 12.6
Std nTPM: 4.2
Median nTPM: 20.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 35.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 33.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 33.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 33.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 31.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 30.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 30.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 29.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 29.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 28.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 28.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.4
FF:10158-103A5 76 years, female 27.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1.4
Samples: 4

Max nTPM: 1.6
Min nTPM: 1.0
Sample A Female 1.6
Sample B Female 1.4
Sample C Male 1.0
Sample D Male 1.5
Midbrain
nTPM: 1.2
Samples: 4

Max nTPM: 1.4
Min nTPM: 1.0
Sample A Female 1.2
Sample B Female 1.1
Sample C Male 1.4
Sample D Male 1.0
Periaqueductal gray
nTPM: 1.2
Samples: 3

Max nTPM: 1.5
Min nTPM: 0.8
Sample B Female 1.2
Sample C Male 0.8
Sample D Male 1.5
Superior colliculi
nTPM: 1.2
Samples: 4

Max nTPM: 1.3
Min nTPM: 1.1
Sample A Female 1.1
Sample B Female 1.1
Sample C Male 1.1
Sample D Male 1.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 4.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.3
Samples: 4

Max nTPM: 5.0
Min nTPM: 2.8
Sample A Male 5.0
Sample B Male 4.4
Sample C Female 2.8
Sample D Female 5.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.4
69529167 Antisense, RP_050421_03_F10, Mouse strain C57BL/6J (56 days, male) 4.4

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