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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CIDEB is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
181.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
139.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
120.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
111.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
103.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
97.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
97.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
96.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
94.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
92.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
92.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
92.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
91.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
90.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
89.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
89.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
89.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
88.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
88.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
85.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
83.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
82.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
82.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
80.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
80.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
78.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
78.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
77.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
76.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
76.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
76.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
75.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
74.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
74.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
74.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
73.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
71.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
71.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
70.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
68.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
67.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
67.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
66.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
66.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
66.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
66.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
65.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
64.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
64.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
64.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
64.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
63.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
63.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
63.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
62.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
62.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
62.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
62.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
62.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
61.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
61.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
61.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
60.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
60.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
60.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
60.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
60.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
59.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
59.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
59.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
58.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
57.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
57.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
57.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
56.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
56.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
56.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
56.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
56.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
55.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
55.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
55.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
55.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
54.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
54.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
53.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
53.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
53.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
53.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
52.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
52.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
52.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
51.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
50.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
50.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
50.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
50.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
50.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
50.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
49.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
49.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
49.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
49.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
49.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
48.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
48.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
48.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
47.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
47.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
47.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
47.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
47.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
46.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
46.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
46.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
45.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
45.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
45.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
45.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
44.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
44.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
43.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
43.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
43.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
42.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
42.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
42.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
41.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
41.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
40.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
40.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
40.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
40.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
39.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
39.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
38.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
38.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
38.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
38.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
37.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
37.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
37.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
37.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
37.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
36.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
36.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
36.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
36.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
36.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
35.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
35.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
35.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
34.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
34.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
34.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
34.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
33.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
33.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
33.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
33.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
32.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
32.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
32.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
32.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
32.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
32.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
31.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
31.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
31.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
30.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
30.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
30.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
30.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
30.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
29.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
29.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
29.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
29.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
29.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
28.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
28.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
28.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
27.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
27.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
27.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
27.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
27.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
26.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
26.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
26.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
26.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
26.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
26.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
26.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
26.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
25.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
25.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
25.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
24.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
24.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
24.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
23.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
22.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
22.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
22.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
22.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
22.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
21.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
21.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
20.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
19.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
19.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
18.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
17.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
17.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
17.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
17.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
16.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
14.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
11.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
3.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
3.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
3.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CIDEB is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
46.3
Number of samples
231
Samples
Sample
Description
TPM
DO48719
0 years, male, NA, stage:2, alive, 690 days
186.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
170.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
166.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
136.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
128.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
121.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
119.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
118.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
113.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
110.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
108.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
108.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
107.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
107.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
105.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
104.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
104.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
103.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
101.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
100.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
95.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
93.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
92.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
91.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
90.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
85.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
84.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
83.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
81.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
81.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
80.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
78.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
78.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
77.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
76.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
76.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
76.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
76.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
75.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
74.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
74.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
74.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
74.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
74.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
72.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
72.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
72.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
72.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
69.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
69.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
68.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
68.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
68.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
68.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
66.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
66.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
66.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
63.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
63.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
63.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
63.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
62.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
62.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
61.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
60.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
60.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
59.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
57.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
56.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
55.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
54.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
53.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
53.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
53.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
52.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
52.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
52.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
51.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
50.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
50.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
49.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
48.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
48.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
47.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
47.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
46.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
46.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
46.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
45.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
45.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
45.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
45.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
44.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
43.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
43.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
43.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
43.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
43.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
43.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
42.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
42.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
42.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
42.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
42.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
42.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
41.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
41.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
40.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
40.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
39.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
38.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
38.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
37.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
37.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
36.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
36.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
36.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
36.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
36.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
36.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
35.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
35.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
35.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
35.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
34.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
34.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
33.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
33.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
33.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
33.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
33.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
33.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
32.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
32.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
32.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
32.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
32.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
31.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
31.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
31.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
31.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
30.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
30.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
30.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
29.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
29.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
29.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
29.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
29.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
29.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
29.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
29.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
28.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
28.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
28.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
28.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
28.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
27.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
26.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
25.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
25.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
25.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
25.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
22.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
22.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
21.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
20.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
554
Normal
1.3
698
Normal
1.3
968
Normal
1.2
426
Normal
1.1
553
Tumor
1.1
922
Normal
1.1
363
Tumor
1.1
636
Normal
1.1
298
Normal
1.0
616
Normal
1.0
1014
Normal
1.0
964
Normal
1.0
388
Normal
1.0
484
Normal
0.9
342
Normal
0.9
642
Normal
0.9
534
Normal
0.9
915
Tumor
0.9
921
Tumor
0.9
728
Normal
0.9
955
Tumor
0.9
481
Tumor
0.9
868
Normal
0.9
396
Normal
0.9
648
Normal
0.9
572
Normal
0.9
618
Normal
0.9
958
Normal
0.9
952
Normal
0.9
546
Normal
0.8
488
Normal
0.8
882
Normal
0.8
714
Normal
0.8
436
Normal
0.8
1022
Normal
0.8
462
Normal
0.8
412
Normal
0.8
332
Normal
0.8
356
Normal
0.8
228
Normal
0.8
628
Normal
0.8
564
Normal
0.8
918
Normal
0.8
924
Normal
0.8
568
Normal
0.8
938
Normal
0.8
956
Normal
0.8
866
Normal
0.8
1028
Normal
0.8
966
Normal
0.8
392
Normal
0.8
452
Normal
0.8
944
Normal
0.8
422
Normal
0.8
286
Normal
0.8
428
Normal
0.8
132
Normal
0.8
448
Normal
0.7
128
Normal
0.7
746
Normal
0.7
142
Normal
0.7
482
Normal
0.7
314
Normal
0.7
778
Normal
0.7
982
Normal
0.7
627
Tumor
0.7
222
Normal
0.7
1046
Normal
0.7
278
Normal
0.7
818
Normal
0.7
816
Normal
0.7
328
Normal
0.7
416
Normal
0.7
196
Normal
0.7
172
Normal
0.7
878
Normal
0.7
1016
Normal
0.7
528
Normal
0.7
214
Normal
0.7
786
Normal
0.7
1044
Normal
0.7
723
Tumor
0.7
954
Normal
0.7
722
Normal
0.7
494
Normal
0.7
1043
Tumor
0.6
466
Normal
0.6
472
Normal
0.6
218
Normal
0.6
824
Normal
0.6
186
Normal
0.6
1032
Normal
0.6
148
Normal
0.6
696
Normal
0.6
744
Normal
0.6
368
Normal
0.6
354
Normal
0.6
852
Normal
0.6
926
Normal
0.6
111
Normal
0.6
162
Normal
0.6
464
Normal
0.6
742
Normal
0.6
258
Normal
0.6
358
Normal
0.6
138
Normal
0.6
284
Normal
0.6
738
Normal
0.6
526
Normal
0.6
212
Normal
0.6
518
Normal
0.6
232
Normal
0.6
558
Normal
0.6
124
Normal
0.6
344
Normal
0.6
976
Normal
0.6
862
Normal
0.5
864
Normal
0.5
1026
Normal
0.5
446
Normal
0.5
874
Normal
0.5
574
Normal
0.5
424
Normal
0.5
136
Normal
0.5
858
Normal
0.5
114
Normal
0.5
756
Normal
0.5
474
Normal
0.5
914
Normal
0.5
468
Normal
0.5
686
Normal
0.5
364
Normal
0.5
978
Normal
0.5
456
Normal
0.5
414
Normal
0.5
981
Tumor
0.5
492
Normal
0.5
867
Tumor
0.4
261
Tumor
0.4
376
Normal
0.4
1042
Normal
0.4
394
Normal
0.4
984
Normal
0.4
224
Normal
0.4
434
Normal
0.4
615
Tumor
0.4
912
Normal
0.4
432
Normal
0.4
538
Normal
0.4
713
Tumor
0.4
524
Normal
0.3
515
Tumor
0.3
884
Normal
0.3
662
Normal
0.3
362
Normal
0.3
716
Normal
0.3
664
Normal
0.3
312
Normal
0.3
146
Normal
0.3
352
Normal
0.3
188
Normal
0.3
327
Tumor
0.3
478
Normal
0.3
262
Normal
0.3
353
Tumor
0.3
1027
Tumor
0.3
366
Normal
0.2
916
Normal
0.2
514
Normal
0.2
666
Normal
0.2
145
Tumor
0.2
272
Normal
0.2
126
Normal
0.2
923
Tumor
0.2
415
Tumor
0.2
444
Normal
0.2
785
Tumor
0.2
498
Normal
0.1
386
Normal
0.1
851
Tumor
0.1
137
Tumor
0.1
715
Tumor
0.1
516
Normal
0.1
384
Normal
0.1
365
Tumor
0.1
411
Tumor
0.1
431
Tumor
0.1
1045
Tumor
0.0
815
Tumor
0.0
536
Normal
0.0
445
Tumor
0.0
268
Normal
0.0
727
Tumor
0.0
391
Tumor
0.0
1031
Tumor
0.0
672
Normal
0.0
755
Tumor
0.0
741
Tumor
-0.1
983
Tumor
-0.1
617
Tumor
-0.1
423
Tumor
-0.1
873
Tumor
-0.1
357
Tumor
-0.1
361
Tumor
-0.1
421
Tumor
-0.1
1025
Tumor
-0.1
413
Tumor
-0.1
571
Tumor
-0.1
863
Tumor
-0.1
195
Tumor
-0.2
513
Tumor
-0.2
913
Tumor
-0.2
641
Tumor
-0.2
563
Tumor
-0.2
937
Tumor
-0.2
857
Tumor
-0.2
461
Tumor
-0.2
477
Tumor
-0.2
471
Tumor
-0.2
967
Tumor
-0.2
217
Tumor
-0.2
635
Tumor
-0.2
227
Tumor
-0.3
695
Tumor
-0.3
455
Tumor
-0.3
113
Tumor
-0.3
435
Tumor
-0.3
721
Tumor
-0.3
127
Tumor
-0.3
112
Tumor
-0.3
685
Tumor
-0.3
192
Normal
-0.3
267
Tumor
-0.4
141
Tumor
-0.4
171
Tumor
-0.4
223
Tumor
-0.4
443
Tumor
-0.4
483
Tumor
-0.4
187
Tumor
-0.4
341
Tumor
-0.4
185
Tumor
-0.4
665
Tumor
-0.4
737
Tumor
-0.4
911
Tumor
-0.5
523
Tumor
-0.5
957
Tumor
-0.5
123
Tumor
-0.5
977
Tumor
-0.5
663
Tumor
-0.5
277
Tumor
-0.5
451
Tumor
-0.5
131
Tumor
-0.5
963
Tumor
-0.5
147
Tumor
-0.5
943
Tumor
-0.5
447
Tumor
-0.5
491
Tumor
-0.6
533
Tumor
-0.6
343
Tumor
-0.6
161
Tumor
-0.6
297
Tumor
-0.6
467
Tumor
-0.6
953
Tumor
-0.7
465
Tumor
-0.7
724
Normal
-0.7
355
Tumor
-0.7
393
Tumor
-0.7
877
Tumor
-0.7
861
Tumor
-0.7
1041
Tumor
-0.7
135
Tumor
-0.7
221
Tumor
-0.7
473
Tumor
-0.7
433
Tumor
-0.7
917
Tumor
-0.7
881
Tumor
-0.8
525
Tumor
-0.8
965
Tumor
-0.8
517
Tumor
-0.8
487
Tumor
-0.8
814
Normal
-0.8
777
Tumor
-0.8
883
Tumor
-0.8
1021
Tumor
-0.8
331
Tumor
-0.9
537
Tumor
-0.9
351
Tumor
-0.9
823
Tumor
-0.9
191
Tumor
-0.9
313
Tumor
-0.9
463
Tumor
-0.9
1015
Tumor
-0.9
813
Tumor
-0.9
493
Tumor
-1.0
395
Tumor
-1.0
285
Tumor
-1.0
951
Tumor
-1.0
1013
Tumor
-1.0
125
Tumor
-1.0
231
Tumor
-1.0
743
Tumor
-1.0
271
Tumor
-1.0
975
Tumor
-1.1
383
Tumor
-1.1
567
Tumor
-1.1
367
Tumor
-1.1
427
Tumor
-1.1
925
Tumor
-1.1
817
Tumor
-1.2
387
Tumor
-1.2
257
Tumor
-1.2
557
Tumor
-1.2
671
Tumor
-1.2
745
Tumor
-1.2
497
Tumor
-1.2
535
Tumor
-1.2
697
Tumor
-1.2
213
Tumor
-1.3
647
Tumor
-1.3
527
Tumor
-1.4
425
Tumor
-1.4
311
Tumor
-1.4
661
Tumor
-1.4
865
Tumor
-1.5
545
Tumor
-1.5
573
Tumor
-1.5
211
Tumor
-1.5
385
Tumor
-1.6
283
Tumor
-1.6
375
Tumor
-1.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
