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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAC1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: 1.63
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
0.000011
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
37%
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
60%
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
102.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
438.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
395.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
382.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
297.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
292.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
276.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
255.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
253.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
246.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
245.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
243.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
241.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
230.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
229.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
218.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
216.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
211.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
207.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
205.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
204.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
198.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
198.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
197.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
193.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
176.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
174.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
173.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
173.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
172.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
171.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
171.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
170.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
170.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
169.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
166.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
160.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
157.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
152.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
151.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
150.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
147.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
146.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
144.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
144.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
144.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
144.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
143.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
141.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
141.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
140.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
140.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
140.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
139.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
137.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
136.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
136.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
135.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
134.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
134.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
132.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
132.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
131.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
130.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
130.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
129.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
129.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
128.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
127.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
126.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
126.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
126.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
126.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
126.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
125.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
125.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
123.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
123.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
123.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
123.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
122.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
121.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
121.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
120.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
119.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
118.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
118.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
117.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
117.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
117.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
117.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
117.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
116.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
115.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
115.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
115.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
114.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
114.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
114.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
113.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
113.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
112.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
112.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
112.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
112.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
112.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
111.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
111.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
110.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
110.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
109.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
109.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
109.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
109.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
108.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
108.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
107.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
107.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
107.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
107.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
107.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
107.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
106.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
106.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
106.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
105.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
105.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
105.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
105.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
105.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
105.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
104.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
104.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
104.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
103.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
103.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
102.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
102.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
102.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
102.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
101.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
100.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
99.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
99.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
99.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
99.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
99.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
99.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
98.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
98.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
97.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
97.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
97.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
97.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
96.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
96.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
96.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
96.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
95.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
95.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
95.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
95.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
95.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
95.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
94.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
94.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
93.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
93.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
93.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
92.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
92.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
91.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
91.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
91.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
91.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
90.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
90.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
90.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
89.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
89.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
89.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
89.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
89.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
88.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
88.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
88.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
88.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
88.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
88.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
88.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
88.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
88.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
88.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
87.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
87.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
87.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
87.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
87.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
87.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
87.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
86.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
86.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
85.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
85.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
84.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
84.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
84.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
83.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
83.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
83.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
83.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
83.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
82.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
82.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
82.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
82.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
82.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
81.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
81.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
81.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
81.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
80.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
80.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
79.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
79.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
79.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
79.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
79.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
79.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
79.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
79.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
79.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
78.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
78.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
78.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
77.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
77.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
77.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
76.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
76.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
76.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
76.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
75.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
75.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
75.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
75.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
75.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
75.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
75.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
74.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
74.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
74.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
73.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
73.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
73.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
73.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
73.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
72.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
72.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
72.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
72.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
72.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
72.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
72.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
72.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
71.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
71.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
71.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
70.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
70.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
70.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
70.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
70.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
69.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
69.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
69.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
69.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
69.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
69.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
69.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
68.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
68.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
68.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
68.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
68.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
68.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
68.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
68.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
67.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
67.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
67.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
66.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
66.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
66.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
66.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
66.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
65.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
65.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
64.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
64.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
64.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
63.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
63.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
63.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
63.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
63.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
63.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
63.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
62.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
62.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
62.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
62.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
62.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
61.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
61.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
61.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
61.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
61.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
61.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
61.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
61.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
60.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
60.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
60.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
59.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
58.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
58.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
57.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
57.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
57.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
57.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
57.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
56.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
56.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
55.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
55.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
54.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
54.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
54.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
53.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
53.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
53.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
53.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
53.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
52.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
51.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
51.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
50.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
50.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
50.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
50.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
49.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
48.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
48.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
47.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
46.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
44.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
43.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
40.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
39.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
39.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
39.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAC1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: 2.14
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
0.0000037
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
0%
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
73%
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
114.3
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
429.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
405.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
389.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
334.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
325.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
318.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
312.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
273.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
260.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
255.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
254.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
228.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
227.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
217.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
213.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
210.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
206.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
191.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
185.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
185.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
183.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
180.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
179.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
177.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
174.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
173.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
171.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
168.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
168.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
164.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
163.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
162.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
159.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
158.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
157.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
156.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
151.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
151.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
151.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
150.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
150.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
150.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
148.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
147.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
146.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
146.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
146.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
145.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
144.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
143.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
141.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
141.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
140.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
138.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
133.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
133.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
133.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
133.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
132.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
132.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
131.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
129.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
129.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
127.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
127.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
124.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
124.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
124.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
124.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
123.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
121.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
121.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
119.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
117.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
117.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
117.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
117.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
115.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
113.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
113.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
113.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
112.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
111.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
111.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
111.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
110.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
109.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
109.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
109.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
109.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
108.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
108.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
108.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
108.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
107.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
106.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
106.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
106.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
106.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
105.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
105.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
103.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
103.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
102.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
102.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
102.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
101.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
101.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
101.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
100.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
100.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
100.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
100.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
99.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
99.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
97.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
97.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
97.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
97.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
96.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
96.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
96.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
95.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
95.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
95.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
94.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
94.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
94.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
93.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
93.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
92.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
92.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
91.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
91.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
91.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
91.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
91.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
90.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
90.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
90.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
90.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
89.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
89.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
89.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
89.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
89.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
88.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
87.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
87.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
86.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
86.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
86.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
86.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
85.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
85.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
84.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
84.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
84.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
84.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
83.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
83.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
82.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
82.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
79.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
79.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
79.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
78.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
78.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
78.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
77.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
77.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
77.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
77.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
76.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
76.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
75.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
75.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
75.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
75.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
74.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
73.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
72.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
71.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
71.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
71.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
71.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
70.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
69.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
69.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
69.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
68.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
68.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
67.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
67.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
66.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
64.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
64.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
64.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
64.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
62.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
62.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
62.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
61.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
61.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
60.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
60.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
60.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
60.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
59.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
59.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
59.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
58.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
58.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
57.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
57.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
56.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
56.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
53.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
53.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
52.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
52.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
51.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
51.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
50.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
48.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
47.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
47.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
46.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
45.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
43.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
41.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
311
Tumor
0.3
211
Tumor
0.3
813
Tumor
0.2
124
Normal
0.2
343
Tumor
0.2
223
Tumor
0.2
192
Normal
0.2
981
Tumor
0.2
913
Tumor
0.2
283
Tumor
0.2
744
Normal
0.2
914
Normal
0.2
271
Tumor
0.2
878
Normal
0.2
815
Tumor
0.2
538
Normal
0.1
867
Tumor
0.1
816
Normal
0.1
342
Normal
0.1
823
Tumor
0.1
966
Normal
0.1
125
Tumor
0.1
741
Tumor
0.1
874
Normal
0.1
861
Tumor
0.1
344
Normal
0.1
1028
Normal
0.1
977
Tumor
0.1
491
Tumor
0.1
447
Tumor
0.1
738
Normal
0.1
877
Tumor
0.1
952
Normal
0.1
146
Normal
0.1
536
Normal
0.0
455
Tumor
0.0
218
Normal
0.0
214
Normal
0.0
817
Tumor
0.0
746
Normal
0.0
1027
Tumor
0.0
728
Normal
0.0
851
Tumor
0.0
1026
Normal
0.0
196
Normal
0.0
975
Tumor
0.0
385
Tumor
0.0
814
Normal
0.0
222
Normal
0.0
778
Normal
0.0
375
Tumor
0.0
412
Normal
0.0
185
Tumor
0.0
363
Tumor
0.0
268
Normal
0.0
698
Normal
0.0
745
Tumor
N/A
434
Normal
0.0
518
Normal
0.0
386
Normal
0.0
715
Tumor
0.0
917
Tumor
0.0
262
Normal
0.0
285
Tumor
0.0
272
Normal
0.0
217
Tumor
0.0
461
Tumor
0.0
213
Tumor
0.0
533
Tumor
0.0
138
Normal
0.0
498
Normal
0.0
421
Tumor
0.0
921
Tumor
0.0
852
Normal
0.0
448
Normal
0.0
742
Normal
0.0
824
Normal
0.0
724
Normal
0.0
111
Normal
-0.1
685
Tumor
-0.1
546
Normal
-0.1
881
Tumor
-0.1
142
Normal
-0.1
224
Normal
-0.1
956
Normal
-0.1
126
Normal
-0.1
661
Tumor
-0.1
1016
Normal
-0.1
777
Tumor
-0.1
452
Normal
-0.1
355
Tumor
-0.1
515
Tumor
-0.1
516
Normal
-0.1
228
Normal
-0.1
963
Tumor
-0.1
137
Tumor
-0.1
135
Tumor
-0.1
366
Normal
-0.1
785
Tumor
-0.1
1015
Tumor
-0.1
882
Normal
-0.1
523
Tumor
-0.1
721
Tumor
-0.1
857
Tumor
-0.1
195
Tumor
-0.1
261
Tumor
-0.1
492
Normal
-0.1
727
Tumor
-0.1
395
Tumor
-0.1
312
Normal
-0.1
924
Normal
-0.1
474
Normal
-0.1
131
Tumor
-0.1
392
Normal
-0.1
545
Tumor
-0.1
425
Tumor
-0.1
737
Tumor
-0.1
227
Tumor
-0.1
423
Tumor
-0.1
954
Normal
-0.1
212
Normal
-0.1
477
Tumor
-0.1
983
Tumor
-0.1
141
Tumor
-0.1
525
Tumor
-0.1
755
Tumor
-0.1
286
Normal
-0.1
866
Normal
-0.1
527
Tumor
-0.1
114
Normal
-0.1
858
Normal
-0.1
188
Normal
-0.1
873
Tumor
-0.1
1041
Tumor
-0.1
297
Tumor
-0.1
367
Tumor
-0.1
982
Normal
-0.1
938
Normal
-0.1
713
Tumor
-0.1
943
Tumor
-0.1
864
Normal
-0.1
411
Tumor
-0.1
911
Tumor
-0.1
955
Tumor
-0.1
662
Normal
-0.1
327
Tumor
-0.1
136
Normal
-0.1
524
Normal
-0.2
696
Normal
-0.2
278
Normal
-0.2
186
Normal
-0.2
1022
Normal
-0.2
332
Normal
-0.2
916
Normal
-0.2
918
Normal
-0.2
862
Normal
-0.2
976
Normal
-0.2
396
Normal
-0.2
1042
Normal
-0.2
191
Tumor
-0.2
968
Normal
-0.2
284
Normal
-0.2
362
Normal
-0.2
128
Normal
-0.2
1043
Tumor
-0.2
488
Normal
-0.2
257
Tumor
-0.2
554
Normal
-0.2
915
Tumor
-0.2
365
Tumor
-0.2
422
Normal
-0.2
883
Tumor
-0.2
368
Normal
-0.2
467
Tumor
-0.2
394
Normal
-0.2
433
Tumor
-0.2
364
Normal
-0.2
416
Normal
-0.2
686
Normal
-0.2
635
Tumor
-0.2
723
Tumor
-0.2
356
Normal
-0.2
221
Tumor
-0.2
884
Normal
-0.2
298
Normal
-0.2
445
Tumor
-0.2
132
Normal
-0.2
387
Tumor
-0.2
1025
Tumor
-0.2
1031
Tumor
-0.2
383
Tumor
-0.2
462
Normal
-0.2
388
Normal
-0.2
471
Tumor
-0.2
456
Normal
-0.2
172
Normal
-0.2
912
Normal
-0.2
494
Normal
-0.2
472
Normal
-0.2
1045
Tumor
-0.2
162
Normal
-0.2
435
Tumor
-0.2
863
Tumor
-0.2
376
Normal
-0.2
258
Normal
-0.2
444
Normal
-0.2
925
Tumor
-0.2
922
Normal
-0.2
123
Tumor
-0.2
361
Tumor
-0.2
526
Normal
-0.2
468
Normal
-0.2
493
Tumor
-0.2
1044
Normal
-0.2
147
Tumor
-0.2
923
Tumor
-0.2
358
Normal
-0.2
697
Tumor
-0.3
384
Normal
-0.3
352
Normal
-0.3
466
Normal
-0.3
865
Tumor
-0.3
716
Normal
-0.3
497
Tumor
-0.3
553
Tumor
-0.3
818
Normal
-0.3
722
Normal
-0.3
944
Normal
-0.3
666
Normal
-0.3
145
Tumor
-0.3
1032
Normal
-0.3
426
Normal
-0.3
534
Normal
-0.3
868
Normal
-0.3
967
Tumor
-0.3
424
Normal
-0.3
513
Tumor
-0.3
1021
Tumor
-0.3
464
Normal
-0.3
277
Tumor
-0.3
528
Normal
-0.3
618
Normal
-0.3
393
Tumor
-0.3
535
Tumor
-0.3
484
Normal
-0.3
413
Tumor
-0.3
148
Normal
-0.3
478
Normal
-0.3
354
Normal
-0.3
984
Normal
-0.3
642
Normal
-0.3
714
Normal
-0.3
415
Tumor
-0.3
112
Tumor
-0.3
664
Normal
-0.3
483
Tumor
-0.3
463
Tumor
-0.3
671
Tumor
-0.3
695
Tumor
-0.3
926
Normal
-0.3
328
Normal
-0.3
636
Normal
-0.3
517
Tumor
-0.3
171
Tumor
-0.3
937
Tumor
-0.3
672
Normal
-0.3
232
Normal
-0.3
431
Tumor
-0.3
432
Normal
-0.3
482
Normal
-0.3
351
Tumor
-0.3
965
Tumor
-0.3
353
Tumor
-0.3
341
Tumor
-0.4
557
Tumor
-0.4
953
Tumor
-0.4
331
Tumor
-0.4
628
Normal
-0.4
428
Normal
-0.4
187
Tumor
-0.4
161
Tumor
-0.4
743
Tumor
-0.4
436
Normal
-0.4
957
Tumor
-0.4
443
Tumor
-0.4
537
Tumor
-0.4
414
Normal
-0.4
487
Tumor
-0.4
427
Tumor
-0.4
267
Tumor
-0.4
391
Tumor
-0.4
446
Normal
-0.4
786
Normal
-0.4
958
Normal
-0.4
756
Normal
-0.4
451
Tumor
-0.4
964
Normal
-0.4
514
Normal
-0.4
481
Tumor
-0.4
1014
Normal
-0.4
648
Normal
-0.4
1046
Normal
-0.4
231
Tumor
-0.4
615
Tumor
-0.5
357
Tumor
-0.5
978
Normal
-0.5
573
Tumor
-0.5
574
Normal
-0.5
617
Tumor
-0.5
313
Tumor
-0.5
563
Tumor
-0.5
127
Tumor
-0.5
465
Tumor
-0.5
627
Tumor
-0.5
314
Normal
-0.5
951
Tumor
-0.5
1013
Tumor
-0.5
113
Tumor
-0.5
568
Normal
-0.5
616
Normal
-0.5
567
Tumor
-0.6
647
Tumor
-0.6
564
Normal
-0.6
558
Normal
-0.6
641
Tumor
-0.7
663
Tumor
-0.7
665
Tumor
-0.7
572
Normal
-0.8
571
Tumor
-0.8
473
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.