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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
260.4
nTPM
HPA Brain:
193.3
nTPM
GTEx:
260.4
nTPM
FANTOM5:
220.8
Scaled Tags Per Million
Pig:
307.0
nTPM
Mouse:
229.9
nTPM
Allen mouse:
10.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
193.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 178.5
2586
Male, age 75, left hemisphere
201.7
2019
Male, age 18, unknown
196.8
1870
Female, age 42, unknown
196.7
2666
Male, age 74, left hemisphere
194.8
2411
Female, age 72, unknown
180.6
1833
Male, age 53, unknown
174.3
1830
Male, age 51, unknown
172.7
2828
Female, age 72, unknown
167.3
1827
Male, age 72, unknown
157.8
2219
Male, age 76, both hemispheres
142.0
Dorsal raphe nucleus nTPM: 169.7
2750
Male, age 76, both hemispheres
202.0
2016
Female, age 72, unknown
172.0
2047
Male, age 72, unknown
169.1
2298
Female, age 72, unknown
154.4
1828
Male, age 53, unknown
151.1
Inferior colliculus nTPM: 155.1
1890
Male, age 53, unknown
165.1
2097
Female, age 72, unknown
161.9
1848
Female, age 42, unknown
150.6
2849
Male, age 72, unknown
142.8
Median raphe nucleus nTPM: 145.7
2220
Male, age 76, midline
145.7
Periaquaductal grey, anterior nTPM: 173.5
1947
Male, age 18, unknown
181.7
2502
Female, age 75, unknown
181.0
1795
Male, age 51, unknown
157.7
Periaquaductal grey, dorsal nTPM: 143.7
2464
Female, age 72, unknown
152.5
2850
Male, age 76, both hemispheres
143.1
1840
Male, age 53, unknown
143.0
1831
Male, age 72, unknown
136.1
Periaquaductal grey, lateral nTPM: 158.0
2272
Male, age 74, both hemispheres
166.2
2140
Male, age 76, both hemispheres
160.4
2053
Male, age 18, unknown
147.3
Pretectal area nTPM: 167.1
2007
Male, age 72, unknown
202.3
1815
Male, age 53, unknown
188.9
1817
Female, age 42, unknown
187.1
1944
Female, age 72, unknown
178.5
1816
Male, age 51, unknown
172.8
2316
Male, age 76, right hemisphere
172.5
2224
Female, age 72, unknown
165.2
2273
Male, age 74, both hemispheres
162.8
2825
Male, age 18, unknown
142.4
2407
Male, age 75, both hemispheres
139.6
2667
Female, age 75, unknown
126.1
Red nucleus nTPM: 193.3
2503
Female, age 72, unknown
218.3
2785
Male, age 18, unknown
214.8
2588
Male, age 74, left hemisphere
211.0
2769
Male, age 72, unknown
205.6
2227
Male, age 72, unknown
202.3
1904
Male, age 53, unknown
195.6
1821
Female, age 72, unknown
194.6
1865
Male, age 51, unknown
191.0
1954
Female, age 42, unknown
184.8
2725
Female, age 75, unknown
182.1
2584
Male, age 75, left hemisphere
161.9
2823
Male, age 76, right hemisphere
157.4
Substantia nigra nTPM: 175.6
2590
Female, age 75, unknown
198.8
1916
Female, age 42, unknown
185.6
1851
Male, age 51, unknown
183.4
1941
Male, age 53, unknown
183.1
2665
Male, age 74, both hemispheres
180.2
1889
Female, age 72, unknown
176.0
2409
Female, age 72, unknown
170.0
2241
Male, age 72, unknown
166.2
2583
Male, age 75, right hemisphere
157.5
2699
Male, age 18, unknown
155.3
Superior colliculus nTPM: 168.0
2668
Female, age 75, unknown
195.1
1913
Female, age 42, unknown
191.3
2587
Male, age 74, left hemisphere
190.0
2261
Male, age 18, unknown
180.4
1995
Male, age 72, unknown
164.4
1839
Male, age 51, unknown
164.1
1796
Male, age 53, unknown
157.1
2087
Female, age 72, unknown
149.3
1895
Male, age 76, right hemisphere
147.1
2664
Male, age 75, both hemispheres
141.1
Ventral tegmental area nTPM: 174.3
2410
Female, age 72, unknown
184.9
1942
Male, age 51, unknown
183.9
2223
Female, age 72, unknown
183.5
1915
Female, age 42, unknown
172.0
2021
Male, age 53, unknown
163.3
2218
Male, age 76, both hemispheres
158.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
260.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 260.4
Samples: 139
Max nTPM: 552.5
Min nTPM: 156.1
Std nTPM: 72.1
Median nTPM: 252.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
552.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
478.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
458.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
433.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
423.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
396.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
383.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
383.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
381.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
380.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
374.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
366.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
351.3
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
351.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
346.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
342.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
341.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
340.4
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
338.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
337.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
333.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
333.8
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
332.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
330.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
327.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
319.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
318.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
317.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
316.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
315.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
311.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
310.9
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
306.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
306.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
305.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
305.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
295.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
295.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
292.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
292.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
290.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
289.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
288.6
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
287.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
287.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
286.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
286.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
286.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
285.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
284.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
283.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
281.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
281.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
277.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
270.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
269.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
268.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
268.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
267.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
267.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
267.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
266.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
262.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
262.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
262.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
258.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
256.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
254.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
254.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
252.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
249.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
248.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
242.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
238.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
238.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
237.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
237.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
231.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
226.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
224.7
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
223.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
222.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
222.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
220.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
220.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
219.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
219.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
218.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
218.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
217.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
217.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
216.4
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
215.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
214.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
214.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
213.9
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
213.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
211.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
210.7
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
210.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
209.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
208.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
206.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
202.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
202.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
201.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
201.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
201.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
201.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
200.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
199.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
199.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
197.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
195.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
192.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
191.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
186.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
185.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
185.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
183.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
183.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
183.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
182.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
181.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
181.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
179.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
178.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
178.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
177.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
175.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
173.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
171.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
170.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
169.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
167.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
166.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
165.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
160.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
156.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
229.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 229.9
Samples: 4
Max nTPM: 239.5
Min nTPM: 221.7
Sample A
Male
221.7
Sample B
Male
225.0
Sample C
Female
239.5
Sample D
Female
233.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.