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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
231.0
nTPM
HPA Brain:
183.9
nTPM
GTEx:
231.0
nTPM
FANTOM5:
223.4
Scaled Tags Per Million
Pig:
350.7
nTPM
Mouse:
250.8
nTPM
Allen mouse:
18.0
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA047820
Antibody CAB035994
Glial cells
Low
Not detected
Neuronal cells
Not detected
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
183.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 175.9
1898
Male, age 80, left hemisphere
220.9
1855
Male, age 76, left hemisphere
184.6
1911
Female, age 85, right hemisphere
171.5
2621
Female, age 67, right hemisphere
171.0
2529
Female, age 94, left hemisphere
155.7
2148
Female, age 91, left hemisphere
152.0
Dentate gyrus nTPM: 163.8
2010
Male, age 76, both hemispheres
217.4
2530
Female, age 94, left hemisphere
191.1
1927
Female, age 91, both hemispheres
176.4
2246
Female, age 85, both hemispheres
146.4
2528
Male, age 74, both hemispheres
131.3
2531
Female, age 67, both hemispheres
120.5
Entorhinal gyrus nTPM: 160.8
2764
Male, age 80, right hemisphere
186.4
2117
Female, age 91, right hemisphere
168.8
1938
Female, age 85, left hemisphere
168.7
1787
Male, age 76, left hemisphere
166.0
2686
Male, age 75, right hemisphere
141.4
2613
Female, age 94, left hemisphere
133.5
Hippocampus, CA1 nTPM: 183.9
2749
Male, age 80, left hemisphere
294.0
1873
Female, age 85, both hemispheres
206.7
2045
Male, age 76, both hemispheres
154.1
2527
Male, age 74, both hemispheres
144.5
2082
Female, age 91, right hemisphere
120.1
Hippocampus, CA2 nTPM: 180.6
1963
Male, age 80, left hemisphere
232.1
1892
Male, age 76, both hemispheres
212.7
2249
Male, age 74, both hemispheres
186.3
1940
Female, age 85, left hemisphere
181.3
2437
Female, age 94, left hemisphere
144.5
2113
Female, age 91, right hemisphere
126.7
Hippocampus, CA3 nTPM: 159.4
2137
Male, age 80, left hemisphere
234.1
1867
Male, age 76, both hemispheres
197.7
1891
Female, age 85, both hemispheres
164.0
2620
Female, age 94, left hemisphere
129.3
2436
Male, age 74, both hemispheres
118.4
2861
Female, age 67, both hemispheres
112.6
Parahippocampal cortex nTPM: 151.2
1990
Female, age 91, right hemisphere
176.9
2018
Male, age 76, both hemispheres
174.5
1850
Male, age 80, both hemispheres
173.1
2532
Female, age 72, left hemisphere
159.5
1933
Female, age 85, both hemispheres
159.4
2245
Female, age 91, both hemispheres
146.9
2250
Female, age 67, right hemisphere
143.0
2622
Female, age 67, right hemisphere
132.3
2692
Male, age 74, both hemispheres
124.9
2693
Female, age 94, both hemispheres
121.2
Perirhinal gyrus nTPM: 162.8
1794
Male, age 80, right hemisphere
171.9
1841
Female, age 85, right hemisphere
170.3
1847
Female, age 91, left hemisphere
169.7
2848
Male, age 76, right hemisphere
156.3
2521
Female, age 94, right hemisphere
145.7
Subiculum nTPM: 175.7
1901
Male, age 80, both hemispheres
198.2
2042
Male, age 76, both hemispheres
197.3
1977
Female, age 85, both hemispheres
183.1
2438
Female, age 94, left hemisphere
169.6
2729
Female, age 91, right hemisphere
163.3
2619
Male, age 74, both hemispheres
143.0
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
231.0
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 231.0
Samples: 197
Max nTPM: 459.6
Min nTPM: 134.3
Std nTPM: 48.3
Median nTPM: 221.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
459.6
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
416.9
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
410.9
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
368.4
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
359.0
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
356.7
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
335.9
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
324.7
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
322.1
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
321.4
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
318.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
313.5
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
306.0
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
300.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
296.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
294.0
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
292.0
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
289.6
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
289.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
289.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
286.9
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
284.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
281.4
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
281.1
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
279.2
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
277.8
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
276.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
276.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
276.1
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
274.5
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
273.4
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
272.5
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
272.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
270.7
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
270.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
269.6
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
268.7
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
268.0
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
267.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
266.6
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
265.6
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
264.7
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
263.6
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
261.8
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
261.5
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
261.0
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
260.1
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
259.1
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
256.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
255.0
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
253.2
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
252.2
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
251.8
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
251.1
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
250.1
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
247.1
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
245.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
245.4
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
244.3
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
243.9
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
243.5
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
243.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
242.4
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
242.3
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
241.1
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
240.8
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
240.8
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
240.6
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
240.0
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
238.2
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
237.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
237.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
236.5
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
233.6
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
233.4
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
233.1
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
232.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
232.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
232.5
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
232.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
232.3
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
232.2
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
231.7
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
231.6
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
231.4
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
229.3
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
229.0
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
228.9
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
227.8
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
227.6
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
227.5
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
226.4
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
226.1
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
225.5
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
224.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
223.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
223.3
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
221.7
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
221.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
220.3
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
220.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
219.4
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
219.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
219.3
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
218.5
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
218.3
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
217.9
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
217.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
217.6
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
217.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
216.3
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
216.1
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
215.9
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
215.7
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
215.3
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
214.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
214.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
212.9
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
212.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
212.3
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
212.2
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
212.0
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
211.9
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
211.3
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
210.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
210.7
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
210.2
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
209.7
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
209.4
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
209.2
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
208.8
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
207.5
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
207.5
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
207.3
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
206.7
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
205.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
205.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
204.2
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
203.7
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
202.8
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
201.6
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
200.0
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
198.7
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
198.7
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
198.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
198.3
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
198.1
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
198.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
197.8
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
197.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
197.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
196.3
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
196.3
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
195.5
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
195.5
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
194.9
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
194.8
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
194.5
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
194.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
194.1
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
193.7
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
192.2
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
191.7
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
191.7
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
191.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
189.6
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
189.4
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
186.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
186.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
185.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
185.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
182.6
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
182.2
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
182.1
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
181.3
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
180.4
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
180.0
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
179.8
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
178.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
178.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
177.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
175.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
174.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
173.8
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
173.6
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
172.9
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
172.3
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
172.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
169.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
167.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
166.5
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
165.0
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
162.7
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
160.8
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
155.9
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
146.5
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
134.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
250.8
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 229.3
Samples: 4
Max nTPM: 247.1
Min nTPM: 217.0
Sample A
Male
223.1
Sample B
Male
217.0
Sample C
Female
230.0
Sample D
Female
247.1
Hippocampal formation nTPM: 250.8
Samples: 4
Max nTPM: 283.1
Min nTPM: 227.3
Sample A
Male
248.4
Sample B
Male
244.5
Sample C
Female
283.1
Sample D
Female
227.3
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.