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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
44.0
nTPM
HPA Brain:
144.2
nTPM
GTEx:
44.0
nTPM
FANTOM5:
44.9
Scaled Tags Per Million
Pig:
71.9
nTPM
Mouse:
62.6
nTPM
Allen mouse:
0.3
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
144.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 87.2
1827
Male, age 72, unknown
115.0
2586
Male, age 75, left hemisphere
114.4
2828
Female, age 72, unknown
105.9
2219
Male, age 76, both hemispheres
96.6
2411
Female, age 72, unknown
94.0
1870
Female, age 42, unknown
90.4
1833
Male, age 53, unknown
86.6
1830
Male, age 51, unknown
64.2
2666
Male, age 74, left hemisphere
63.7
2019
Male, age 18, unknown
41.2
Dorsal raphe nucleus nTPM: 144.2
2298
Female, age 72, unknown
205.3
2047
Male, age 72, unknown
174.6
1828
Male, age 53, unknown
130.5
2016
Female, age 72, unknown
120.6
2750
Male, age 76, both hemispheres
90.1
Inferior colliculus nTPM: 140.8
2097
Female, age 72, unknown
152.8
1848
Female, age 42, unknown
146.5
1890
Male, age 53, unknown
133.7
2849
Male, age 72, unknown
130.3
Median raphe nucleus nTPM: 78.5
2220
Male, age 76, midline
78.5
Periaquaductal grey, anterior nTPM: 112.7
1947
Male, age 18, unknown
123.1
1795
Male, age 51, unknown
114.6
2502
Female, age 75, unknown
100.3
Periaquaductal grey, dorsal nTPM: 127.2
1840
Male, age 53, unknown
194.5
2464
Female, age 72, unknown
137.5
2850
Male, age 76, both hemispheres
95.3
1831
Male, age 72, unknown
81.5
Periaquaductal grey, lateral nTPM: 104.8
2053
Male, age 18, unknown
143.3
2140
Male, age 76, both hemispheres
102.7
2272
Male, age 74, both hemispheres
68.4
Pretectal area nTPM: 106.6
2224
Female, age 72, unknown
147.8
1816
Male, age 51, unknown
133.8
1944
Female, age 72, unknown
131.7
2825
Male, age 18, unknown
125.2
2667
Female, age 75, unknown
120.2
2273
Male, age 74, both hemispheres
113.9
1817
Female, age 42, unknown
111.1
1815
Male, age 53, unknown
78.5
2316
Male, age 76, right hemisphere
77.4
2007
Male, age 72, unknown
76.8
2407
Male, age 75, both hemispheres
56.4
Red nucleus nTPM: 79.2
2725
Female, age 75, unknown
106.8
1821
Female, age 72, unknown
98.4
2503
Female, age 72, unknown
96.2
1954
Female, age 42, unknown
93.1
2227
Male, age 72, unknown
91.9
2769
Male, age 72, unknown
88.3
1904
Male, age 53, unknown
81.8
2823
Male, age 76, right hemisphere
81.2
1865
Male, age 51, unknown
65.7
2588
Male, age 74, left hemisphere
56.6
2584
Male, age 75, left hemisphere
48.6
2785
Male, age 18, unknown
41.8
Substantia nigra nTPM: 118.3
1916
Female, age 42, unknown
171.3
2699
Male, age 18, unknown
156.9
2409
Female, age 72, unknown
132.8
1889
Female, age 72, unknown
126.6
2241
Male, age 72, unknown
118.0
1851
Male, age 51, unknown
108.5
2590
Female, age 75, unknown
100.0
2665
Male, age 74, both hemispheres
98.4
2583
Male, age 75, right hemisphere
92.1
1941
Male, age 53, unknown
79.1
Superior colliculus nTPM: 90.9
2087
Female, age 72, unknown
126.0
2261
Male, age 18, unknown
124.5
1796
Male, age 53, unknown
111.4
1839
Male, age 51, unknown
96.2
1895
Male, age 76, right hemisphere
88.2
1995
Male, age 72, unknown
75.9
2664
Male, age 75, both hemispheres
74.0
2587
Male, age 74, left hemisphere
72.8
1913
Female, age 42, unknown
70.5
2668
Female, age 75, unknown
69.6
Ventral tegmental area nTPM: 98.6
2410
Female, age 72, unknown
121.5
1915
Female, age 42, unknown
116.1
1942
Male, age 51, unknown
106.1
2218
Male, age 76, both hemispheres
102.2
2021
Male, age 53, unknown
89.8
2223
Female, age 72, unknown
56.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
44.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 44.0
Samples: 139
Max nTPM: 230.0
Min nTPM: 2.8
Std nTPM: 34.5
Median nTPM: 34.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
230.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
170.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
164.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
136.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
126.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
114.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
108.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
107.1
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
91.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
89.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
87.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
87.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
86.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
82.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
80.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
79.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
78.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
76.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
72.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
72.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
72.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
71.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
69.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
68.8
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
68.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
66.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
66.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
66.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
64.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
64.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
63.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
62.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
60.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
59.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
58.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
56.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
55.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
55.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
55.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
54.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
54.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
52.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
52.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
51.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
49.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
48.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
48.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
48.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
47.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
47.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
47.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
46.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
46.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
45.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
45.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
45.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
44.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
44.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
44.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
44.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
44.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
43.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
42.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
41.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
41.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
39.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
39.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
38.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
36.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
34.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
33.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
33.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
32.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
32.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
32.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
31.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
31.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
31.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
30.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
30.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
30.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
29.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
29.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
29.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
28.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
28.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
28.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
27.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
26.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
25.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
25.0
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
24.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
24.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
24.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
23.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
23.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
22.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
22.4
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
22.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
21.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
21.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
21.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
21.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
21.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
21.0
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
20.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
20.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
19.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
19.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
19.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
18.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
18.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
18.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
16.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
16.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
15.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
14.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
13.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
13.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
13.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
13.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
13.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
11.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
10.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
10.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
9.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
9.0
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
9.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
8.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
8.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
8.0
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
7.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
7.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
6.5
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
5.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
5.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
5.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
4.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
2.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
62.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 62.6
Samples: 4
Max nTPM: 66.9
Min nTPM: 57.2
Sample A
Male
66.5
Sample B
Male
66.9
Sample C
Female
57.2
Sample D
Female
59.9
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.