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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
18.1
nTPM
HPA Brain:
59.5
nTPM
GTEx:
18.1
nTPM
FANTOM5:
66.2
Scaled Tags Per Million
Pig:
15.0
nTPM
Mouse:
41.0
nTPM
Allen mouse:
0.3
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA027546
Glial cells
Not detected
Neuronal cells
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
59.5
Sample id
Sample description
nTPM
Hippocampus nTPM: 59.5
2148
Female, age 91, left hemisphere
76.0
2529
Female, age 94, left hemisphere
75.1
1898
Male, age 80, left hemisphere
59.1
1911
Female, age 85, right hemisphere
53.3
1855
Male, age 76, left hemisphere
52.5
2621
Female, age 67, right hemisphere
41.0
Dentate gyrus nTPM: 43.4
2528
Male, age 74, both hemispheres
65.0
2246
Female, age 85, both hemispheres
53.1
1927
Female, age 91, both hemispheres
47.2
2010
Male, age 76, both hemispheres
37.1
2530
Female, age 94, left hemisphere
35.2
2531
Female, age 67, both hemispheres
23.1
Entorhinal gyrus nTPM: 49.1
2117
Female, age 91, right hemisphere
84.2
1938
Female, age 85, left hemisphere
64.3
1787
Male, age 76, left hemisphere
38.5
2764
Male, age 80, right hemisphere
37.7
2613
Female, age 94, left hemisphere
36.4
2686
Male, age 75, right hemisphere
33.3
Hippocampus, CA1 nTPM: 57.4
2527
Male, age 74, both hemispheres
87.9
2082
Female, age 91, right hemisphere
63.3
1873
Female, age 85, both hemispheres
55.2
2045
Male, age 76, both hemispheres
43.0
2749
Male, age 80, left hemisphere
37.4
Hippocampus, CA2 nTPM: 54.5
2113
Female, age 91, right hemisphere
73.8
2249
Male, age 74, both hemispheres
73.8
1940
Female, age 85, left hemisphere
55.8
1963
Male, age 80, left hemisphere
48.2
2437
Female, age 94, left hemisphere
44.0
1892
Male, age 76, both hemispheres
31.3
Hippocampus, CA3 nTPM: 45.6
2436
Male, age 74, both hemispheres
72.6
1891
Female, age 85, both hemispheres
55.1
1867
Male, age 76, both hemispheres
37.8
2620
Female, age 94, left hemisphere
36.9
2861
Female, age 67, both hemispheres
36.0
2137
Male, age 80, left hemisphere
34.9
Parahippocampal cortex nTPM: 52.4
2250
Female, age 67, right hemisphere
75.4
1933
Female, age 85, both hemispheres
69.1
2692
Male, age 74, both hemispheres
62.1
2018
Male, age 76, both hemispheres
55.3
2245
Female, age 91, both hemispheres
54.4
1990
Female, age 91, right hemisphere
53.5
2622
Female, age 67, right hemisphere
51.7
1850
Male, age 80, both hemispheres
45.6
2693
Female, age 94, both hemispheres
31.4
2532
Female, age 72, left hemisphere
25.3
Perirhinal gyrus nTPM: 45.2
1847
Female, age 91, left hemisphere
69.8
1794
Male, age 80, right hemisphere
47.8
1841
Female, age 85, right hemisphere
43.5
2521
Female, age 94, right hemisphere
38.8
2848
Male, age 76, right hemisphere
25.9
Subiculum nTPM: 57.8
2729
Female, age 91, right hemisphere
96.5
2619
Male, age 74, both hemispheres
67.1
2438
Female, age 94, left hemisphere
56.8
1977
Female, age 85, both hemispheres
47.0
1901
Male, age 80, both hemispheres
41.2
2042
Male, age 76, both hemispheres
38.0
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
18.1
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 18.1
Samples: 197
Max nTPM: 55.2
Min nTPM: 3.8
Std nTPM: 10.4
Median nTPM: 15.5
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
55.2
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
55.0
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
52.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
50.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
45.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
43.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
43.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
40.4
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
40.3
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
40.0
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
37.3
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
37.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
36.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
35.1
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
34.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
33.7
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
33.2
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
33.1
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
32.9
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
32.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
31.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
31.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
30.7
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
30.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
30.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
30.2
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
29.8
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
29.8
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
29.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
28.7
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
28.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
28.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
28.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
27.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
27.4
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
27.0
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
26.8
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
25.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
25.2
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
25.2
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
24.9
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
24.8
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
24.8
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
24.7
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
24.6
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
24.6
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
24.6
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
24.4
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
24.3
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
24.0
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
23.9
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
23.4
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
23.3
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
23.0
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
23.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
23.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
22.9
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
22.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
22.3
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
21.4
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
21.2
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
21.2
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
21.0
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
20.9
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
20.8
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
20.5
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
20.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
20.0
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
19.9
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
19.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
19.3
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
19.1
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
19.1
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
19.0
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
19.0
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
19.0
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
18.9
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
18.8
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
18.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
18.5
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
18.2
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
18.2
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
18.0
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
17.9
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
17.7
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
17.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
17.7
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
17.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
17.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
17.5
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
17.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
17.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
16.7
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
16.2
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
16.1
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
15.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
15.6
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
15.5
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
15.5
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
15.4
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
15.3
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
15.3
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
15.2
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
15.1
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
15.1
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
15.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
15.0
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
15.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
14.9
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
14.9
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
14.9
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
14.8
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
14.8
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
14.5
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
14.4
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
14.3
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
14.3
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
14.2
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
14.2
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
14.2
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
14.0
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
13.4
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
13.3
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
13.3
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
13.0
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
12.9
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
12.6
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
12.2
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
12.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
12.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
11.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
11.6
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
11.6
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
11.0
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
11.0
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
10.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
10.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
10.7
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
10.4
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
10.4
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
10.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
10.4
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
10.3
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
10.3
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
10.3
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
10.2
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
10.1
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
9.8
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
9.7
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
9.5
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
9.5
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
9.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
9.3
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
9.3
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
9.2
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
9.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
9.0
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
8.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
8.8
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
8.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
8.6
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
8.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
8.6
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
8.5
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
8.5
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
8.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
8.4
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
8.4
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
8.2
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
8.0
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
7.8
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
7.7
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
7.5
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
7.4
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
7.3
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
7.3
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
7.2
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
6.8
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
6.7
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
6.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
6.3
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
6.2
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
6.1
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
6.0
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
5.9
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
5.8
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
5.7
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
5.5
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
5.3
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
5.3
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
5.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
5.1
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
4.7
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
4.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
4.0
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
3.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
3.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
41.0
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 41.0
Samples: 4
Max nTPM: 44.4
Min nTPM: 38.7
Sample A
Male
44.4
Sample B
Male
38.7
Sample C
Female
39.8
Sample D
Female
41.2
Hippocampal formation nTPM: 38.4
Samples: 4
Max nTPM: 45.2
Min nTPM: 32.5
Sample A
Male
45.2
Sample B
Male
39.8
Sample C
Female
32.5
Sample D
Female
36.1
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.