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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DNAJB2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
94.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
90.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
81.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
81.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
75.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
75.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
74.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
74.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
73.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
72.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
70.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
69.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
69.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
68.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
68.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
66.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
64.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
62.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
62.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
61.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
60.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
60.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
60.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
60.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
59.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
59.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
59.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
58.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
58.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
58.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
57.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
57.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
57.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
57.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
57.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
56.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
56.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
56.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
56.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
56.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
56.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
55.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
55.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
53.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
53.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
52.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
52.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
52.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
52.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
52.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
51.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
51.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
51.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
51.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
51.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
51.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
51.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
50.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
50.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
50.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
50.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
50.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
50.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
50.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
49.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
49.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
49.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
48.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
48.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
48.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
47.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
47.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
47.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
47.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
47.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
47.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
47.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
47.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
46.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
46.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
46.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
46.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
46.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
46.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
46.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
45.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
45.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
45.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
45.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
45.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
45.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
44.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
44.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
44.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
44.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
44.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
43.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
43.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
43.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
43.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
43.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
43.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
43.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
43.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
42.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
42.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
42.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
42.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
42.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
41.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
41.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
41.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
41.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
41.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
40.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
40.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
40.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
40.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
39.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
39.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
39.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
39.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
39.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
39.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
39.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
39.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
38.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
38.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
38.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
38.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
38.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
38.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
38.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
38.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
37.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
37.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
37.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
37.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
37.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
37.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
37.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
37.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
37.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
37.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
37.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
37.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
36.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
36.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
36.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
36.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
36.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
36.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
36.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
36.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
36.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
35.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
35.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
35.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
35.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
35.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
34.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
34.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
34.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
34.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
34.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
34.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
34.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
34.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
34.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
34.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
34.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
33.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
33.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
33.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
33.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
33.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
33.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
33.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
33.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
33.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
32.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
32.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
32.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
32.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
32.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
32.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
32.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
32.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
32.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
31.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
31.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
31.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
31.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
31.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
31.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
31.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
31.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
31.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
31.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
31.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
31.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
30.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
30.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
30.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
30.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
30.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
30.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
30.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
30.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
29.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
29.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
29.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
29.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
29.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
29.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
29.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
29.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
29.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
29.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
28.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
28.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
28.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
28.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
28.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
28.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
28.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
28.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
28.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
27.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
27.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
27.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
27.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
27.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
27.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
27.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
27.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
27.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
27.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
27.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
26.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
26.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
26.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
26.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
26.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
26.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
26.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
26.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
26.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
25.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
25.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
25.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
25.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
25.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
25.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
25.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
25.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
25.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
24.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
24.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
24.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
24.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
24.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
24.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
24.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
24.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
24.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
24.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
24.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
24.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
23.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
23.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
23.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
23.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
23.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
23.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
23.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
23.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
23.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
23.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
23.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
23.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
22.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
22.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
22.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
22.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
21.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
21.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
20.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
20.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
20.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
19.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
19.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
19.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
19.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
18.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
18.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
18.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
18.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
16.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
16.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
14.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DNAJB2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.7
Number of samples
231
Samples
Sample
Description
TPM
DO23511
0 years, female, NA, stage:3, dead, 180 days
329.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
122.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
117.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
115.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
114.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
102.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
99.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
94.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
87.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
87.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
83.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
80.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
78.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
75.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
73.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
72.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
68.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
68.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
65.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
62.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
58.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
56.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
56.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
56.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
56.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
55.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
55.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
55.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
55.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
54.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
53.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
52.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
52.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
51.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
51.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
50.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
50.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
49.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
49.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
48.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
48.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
48.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
47.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
47.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
47.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
47.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
45.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
45.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
45.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
45.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
45.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
44.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
44.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
44.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
43.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
43.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
43.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
43.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
42.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
41.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
41.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
41.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
41.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
41.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
41.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
40.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
40.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
40.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
40.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
40.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
39.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
39.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
39.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
38.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
38.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
37.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
37.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
37.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
37.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
37.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
36.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
36.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
36.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
36.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
35.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
35.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
35.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
35.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
35.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
35.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
35.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
35.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
35.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
35.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
35.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
34.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
34.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
34.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
34.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
34.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
34.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
33.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
33.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
33.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
33.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
33.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
33.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
33.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
33.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
32.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
32.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
32.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
32.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
32.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
32.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
32.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
31.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
31.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
31.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
31.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
31.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
31.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
31.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
31.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
30.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
30.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
30.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
30.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
30.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
30.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
29.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
29.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
29.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
29.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
28.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
28.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
28.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
28.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
28.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
28.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
28.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
28.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
28.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
28.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
27.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
27.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
27.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
27.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
26.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
26.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
26.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
26.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
26.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
26.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
25.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
25.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
25.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
25.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
25.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
25.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
25.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
25.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
24.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
24.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
24.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
24.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
24.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
23.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
23.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
23.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
23.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
23.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
23.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
22.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
22.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
22.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
22.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
21.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
21.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
20.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
20.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
20.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
19.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
16.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
913
Tumor
1.1
863
Tumor
1.1
231
Tumor
1.0
925
Tumor
1.0
911
Tumor
0.9
741
Tumor
0.7
145
Tumor
0.7
123
Tumor
0.7
171
Tumor
0.7
261
Tumor
0.6
517
Tumor
0.6
483
Tumor
0.6
1027
Tumor
0.6
951
Tumor
0.5
1045
Tumor
0.5
1041
Tumor
0.5
425
Tumor
0.5
217
Tumor
0.5
743
Tumor
0.5
873
Tumor
0.4
283
Tumor
0.4
267
Tumor
0.4
977
Tumor
0.4
1015
Tumor
0.4
473
Tumor
0.4
883
Tumor
0.4
137
Tumor
0.4
533
Tumor
0.4
351
Tumor
0.3
221
Tumor
0.3
884
Normal
0.3
127
Tumor
0.3
128
Normal
0.3
271
Tumor
0.3
477
Tumor
0.3
915
Tumor
0.3
313
Tumor
0.3
573
Tumor
0.3
443
Tumor
0.3
487
Tumor
0.3
665
Tumor
0.3
192
Normal
0.3
387
Tumor
0.3
724
Normal
0.3
368
Normal
0.3
867
Tumor
0.3
125
Tumor
0.2
877
Tumor
0.2
571
Tumor
0.2
963
Tumor
0.2
663
Tumor
0.2
498
Normal
0.2
745
Tumor
0.2
488
Normal
0.2
257
Tumor
0.2
615
Tumor
0.2
1013
Tumor
0.2
882
Normal
0.2
912
Normal
0.2
723
Tumor
0.2
427
Tumor
0.2
331
Tumor
0.2
367
Tumor
0.2
224
Normal
0.2
818
Normal
0.2
697
Tumor
0.2
484
Normal
0.2
375
Tumor
0.2
572
Normal
0.2
285
Tumor
0.2
671
Tumor
0.2
923
Tumor
0.2
714
Normal
0.2
567
Tumor
0.2
852
Normal
0.2
527
Tumor
0.1
536
Normal
0.1
756
Normal
0.1
232
Normal
0.1
538
Normal
0.1
268
Normal
0.1
1014
Normal
0.1
135
Tumor
0.1
363
Tumor
0.1
124
Normal
0.1
391
Tumor
0.1
463
Tumor
0.1
535
Tumor
0.1
196
Normal
0.1
563
Tumor
0.1
554
Normal
0.1
114
Normal
0.1
191
Tumor
0.1
815
Tumor
0.1
616
Normal
0.1
525
Tumor
0.1
297
Tumor
0.1
314
Normal
0.1
222
Normal
0.1
695
Tumor
0.1
785
Tumor
0.1
195
Tumor
0.1
455
Tumor
0.1
412
Normal
0.1
635
Tumor
0.1
172
Normal
0.1
924
Normal
0.1
478
Normal
0.1
361
Tumor
0.1
328
Normal
0.1
864
Normal
0.1
685
Tumor
0.1
648
Normal
0.1
524
Normal
0.1
312
Normal
0.1
722
Normal
0.1
824
Normal
0.1
727
Tumor
0.1
386
Normal
0.1
627
Tumor
0.1
494
Normal
0.1
917
Tumor
0.1
956
Normal
0.1
721
Tumor
0.1
481
Tumor
0.1
214
Normal
0.1
355
Tumor
0.1
341
Tumor
0.1
1021
Tumor
0.1
868
Normal
0.1
185
Tumor
0.1
965
Tumor
0.1
141
Tumor
0.1
537
Tumor
0.1
778
Normal
0.1
415
Tumor
0.1
385
Tumor
0.1
553
Tumor
0.1
955
Tumor
0.1
213
Tumor
0.0
262
Normal
0.0
737
Tumor
0.0
862
Normal
0.0
146
Normal
0.0
223
Tumor
0.0
472
Normal
0.0
672
Normal
0.0
424
Normal
0.0
558
Normal
0.0
435
Tumor
0.0
866
Normal
0.0
647
Tumor
0.0
728
Normal
0.0
984
Normal
0.0
515
Tumor
0.0
357
Tumor
0.0
954
Normal
0.0
492
Normal
0.0
516
Normal
0.0
138
Normal
0.0
518
Normal
0.0
534
Normal
0.0
147
Tumor
0.0
744
Normal
0.0
366
Normal
0.0
938
Normal
0.0
142
Normal
0.0
132
Normal
0.0
926
Normal
0.0
465
Tumor
0.0
641
Tumor
0.0
421
Tumor
0.0
471
Tumor
0.0
922
Normal
0.0
755
Tumor
0.0
136
Normal
0.0
218
Normal
0.0
332
Normal
0.0
352
Normal
0.0
716
Normal
0.0
148
Normal
0.0
311
Tumor
0.0
738
Normal
N/A
1044
Normal
0.0
874
Normal
0.0
546
Normal
0.0
258
Normal
0.0
162
Normal
0.0
943
Tumor
0.0
344
Normal
0.0
131
Tumor
0.0
666
Normal
0.0
428
Normal
0.0
528
Normal
0.0
356
Normal
0.0
126
Normal
0.0
574
Normal
0.0
278
Normal
0.0
746
Normal
0.0
698
Normal
0.0
186
Normal
0.0
786
Normal
0.0
952
Normal
0.0
384
Normal
0.0
1026
Normal
0.0
445
Tumor
0.0
426
Normal
0.0
526
Normal
0.0
916
Normal
0.0
713
Tumor
0.0
944
Normal
0.0
474
Normal
0.0
823
Tumor
0.0
878
Normal
0.0
112
Tumor
0.0
452
Normal
0.0
976
Normal
0.0
964
Normal
0.0
462
Normal
0.0
545
Tumor
0.0
327
Tumor
-0.1
298
Normal
-0.1
983
Tumor
-0.1
446
Normal
-0.1
568
Normal
-0.1
433
Tumor
-0.1
1032
Normal
-0.1
1028
Normal
-0.1
981
Tumor
-0.1
228
Normal
-0.1
968
Normal
-0.1
967
Tumor
-0.1
444
Normal
-0.1
422
Normal
-0.1
187
Tumor
-0.1
447
Tumor
-0.1
111
Normal
-0.1
514
Normal
-0.1
662
Normal
-0.1
451
Tumor
-0.1
364
Normal
-0.1
188
Normal
-0.1
953
Tumor
-0.1
376
Normal
-0.1
1022
Normal
-0.1
161
Tumor
-0.1
395
Tumor
-0.1
362
Normal
-0.1
416
Normal
-0.1
394
Normal
-0.1
686
Normal
-0.1
493
Tumor
-0.1
742
Normal
-0.1
388
Normal
-0.1
434
Normal
-0.1
353
Tumor
-0.1
978
Normal
-0.1
342
Normal
-0.1
857
Tumor
-0.1
284
Normal
-0.1
816
Normal
-0.1
423
Tumor
-0.1
212
Normal
-0.1
1016
Normal
-0.1
464
Normal
-0.1
918
Normal
-0.1
513
Tumor
-0.1
696
Normal
-0.1
354
Normal
-0.1
966
Normal
-0.1
914
Normal
-0.1
715
Tumor
-0.1
365
Tumor
-0.1
564
Normal
-0.1
482
Normal
-0.1
628
Normal
-0.1
286
Normal
-0.1
851
Tumor
-0.1
618
Normal
-0.2
664
Normal
-0.2
1046
Normal
-0.2
392
Normal
-0.2
396
Normal
-0.2
272
Normal
-0.2
858
Normal
-0.2
982
Normal
-0.2
456
Normal
-0.2
636
Normal
-0.2
921
Tumor
-0.2
414
Normal
-0.2
113
Tumor
-0.2
436
Normal
-0.2
1025
Tumor
-0.2
383
Tumor
-0.2
448
Normal
-0.2
343
Tumor
-0.2
861
Tumor
-0.2
432
Normal
-0.2
211
Tumor
-0.2
1042
Normal
-0.2
937
Tumor
-0.2
642
Normal
-0.2
468
Normal
-0.2
958
Normal
-0.2
277
Tumor
-0.3
466
Normal
-0.3
431
Tumor
-0.3
523
Tumor
-0.3
461
Tumor
-0.3
557
Tumor
-0.3
411
Tumor
-0.3
661
Tumor
-0.3
358
Normal
-0.3
497
Tumor
-0.3
881
Tumor
-0.3
413
Tumor
-0.3
227
Tumor
-0.3
975
Tumor
-0.3
817
Tumor
-0.3
777
Tumor
-0.3
813
Tumor
-0.4
957
Tumor
-0.4
617
Tumor
-0.4
491
Tumor
-0.4
814
Normal
-0.4
865
Tumor
-0.4
1043
Tumor
-0.4
393
Tumor
-0.4
1031
Tumor
-0.4
467
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.