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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
534.1
nTPM
HPA Brain:
583.5
nTPM
GTEx:
534.1
nTPM
FANTOM5:
900.6
Scaled Tags Per Million
Pig:
1726.2
nTPM
Mouse:
1422.7
nTPM
Allen mouse:
16.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
583.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 445.1
2586
Male, age 75, left hemisphere
775.7
1870
Female, age 42, unknown
524.8
1833
Male, age 53, unknown
510.5
2019
Male, age 18, unknown
473.0
2828
Female, age 72, unknown
415.6
1830
Male, age 51, unknown
412.6
2411
Female, age 72, unknown
406.3
1827
Male, age 72, unknown
389.7
2666
Male, age 74, left hemisphere
311.9
2219
Male, age 76, both hemispheres
230.6
Dorsal raphe nucleus nTPM: 410.0
2750
Male, age 76, both hemispheres
459.4
1828
Male, age 53, unknown
452.6
2016
Female, age 72, unknown
421.7
2047
Male, age 72, unknown
380.7
2298
Female, age 72, unknown
335.7
Inferior colliculus nTPM: 571.2
1848
Female, age 42, unknown
655.6
2849
Male, age 72, unknown
578.0
2097
Female, age 72, unknown
575.8
1890
Male, age 53, unknown
475.5
Median raphe nucleus nTPM: 456.4
2220
Male, age 76, midline
456.4
Periaquaductal grey, anterior nTPM: 465.2
2502
Female, age 75, unknown
687.9
1947
Male, age 18, unknown
362.9
1795
Male, age 51, unknown
344.8
Periaquaductal grey, dorsal nTPM: 458.7
2850
Male, age 76, both hemispheres
560.4
2464
Female, age 72, unknown
511.1
1840
Male, age 53, unknown
482.7
1831
Male, age 72, unknown
280.7
Periaquaductal grey, lateral nTPM: 369.1
2140
Male, age 76, both hemispheres
500.0
2053
Male, age 18, unknown
373.7
2272
Male, age 74, both hemispheres
233.5
Pretectal area nTPM: 438.6
1817
Female, age 42, unknown
601.6
2667
Female, age 75, unknown
575.7
1816
Male, age 51, unknown
472.5
2316
Male, age 76, right hemisphere
457.7
2407
Male, age 75, both hemispheres
451.2
1815
Male, age 53, unknown
441.1
2007
Male, age 72, unknown
424.8
1944
Female, age 72, unknown
417.9
2825
Male, age 18, unknown
386.0
2224
Female, age 72, unknown
320.4
2273
Male, age 74, both hemispheres
275.9
Red nucleus nTPM: 583.5
1954
Female, age 42, unknown
834.1
1821
Female, age 72, unknown
753.2
1904
Male, age 53, unknown
696.0
2769
Male, age 72, unknown
681.7
2227
Male, age 72, unknown
670.9
1865
Male, age 51, unknown
599.4
2823
Male, age 76, right hemisphere
540.0
2503
Female, age 72, unknown
537.7
2785
Male, age 18, unknown
522.8
2588
Male, age 74, left hemisphere
435.0
2725
Female, age 75, unknown
375.6
2584
Male, age 75, left hemisphere
355.2
Substantia nigra nTPM: 459.7
2241
Male, age 72, unknown
607.3
2699
Male, age 18, unknown
544.8
1889
Female, age 72, unknown
531.1
1851
Male, age 51, unknown
506.8
1916
Female, age 42, unknown
506.1
2409
Female, age 72, unknown
432.7
2665
Male, age 74, both hemispheres
393.4
2583
Male, age 75, right hemisphere
385.1
2590
Female, age 75, unknown
359.0
1941
Male, age 53, unknown
330.5
Superior colliculus nTPM: 426.5
2664
Male, age 75, both hemispheres
535.2
1839
Male, age 51, unknown
472.4
2087
Female, age 72, unknown
439.9
2261
Male, age 18, unknown
434.6
1796
Male, age 53, unknown
411.3
1895
Male, age 76, right hemisphere
409.2
2587
Male, age 74, left hemisphere
403.2
1995
Male, age 72, unknown
402.1
2668
Female, age 75, unknown
383.4
1913
Female, age 42, unknown
373.2
Ventral tegmental area nTPM: 411.7
2410
Female, age 72, unknown
477.2
1915
Female, age 42, unknown
456.1
2218
Male, age 76, both hemispheres
432.7
2021
Male, age 53, unknown
374.0
1942
Male, age 51, unknown
369.4
2223
Female, age 72, unknown
361.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
534.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 534.1
Samples: 139
Max nTPM: 1685.5
Min nTPM: 108.0
Std nTPM: 267.8
Median nTPM: 481.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1685.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1434.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1426.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
1422.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1296.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1162.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1143.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
1133.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1089.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
994.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
918.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
909.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
843.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
841.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
838.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
819.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
805.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
798.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
786.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
778.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
762.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
756.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
736.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
727.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
697.5
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
696.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
686.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
676.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
664.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
663.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
658.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
630.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
627.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
626.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
624.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
620.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
619.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
584.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
582.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
569.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
560.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
557.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
550.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
550.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
549.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
545.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
539.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
538.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
537.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
533.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
532.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
531.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
524.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
523.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
516.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
512.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
508.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
507.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
505.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
504.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
503.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
503.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
502.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
501.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
500.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
499.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
488.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
482.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
482.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
481.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
471.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
466.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
464.8
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
460.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
459.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
459.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
454.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
452.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
447.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
443.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
443.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
441.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
430.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
428.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
428.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
428.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
412.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
407.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
401.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
399.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
399.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
394.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
386.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
384.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
383.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
383.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
382.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
374.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
368.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
368.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
363.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
363.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
362.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
358.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
357.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
356.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
353.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
352.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
352.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
352.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
343.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
339.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
338.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
334.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
330.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
329.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
321.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
321.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
320.4
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
319.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
319.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
313.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
309.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
303.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
299.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
297.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
292.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
291.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
271.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
271.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
265.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
258.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
238.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
225.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
202.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
198.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
188.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
172.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
108.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1422.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 1422.7
Samples: 4
Max nTPM: 1528.4
Min nTPM: 1322.3
Sample A
Male
1379.2
Sample B
Male
1322.3
Sample C
Female
1528.4
Sample D
Female
1460.9
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.